FC930698

Overview
NameFC930698
Unique NameFC930698
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_CLOTE (Chaperone protein clpB OS=Clostridium tetani GN=clpB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.386e-35
Identity = 68/138 (49.28%), Postives = 101/138 (73.19%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTEAVRR+PYSV+LFDE+EKAH  VFN  LQ+LDDGRLTD +G+TVDF+N +IIMTSN+G+ +LL         +  +++V   ++  F+PE LNRLD+I++F PL++ ++ +   + ++D+  RL +R + L VT+
Sbjct:  667 QLTEAVRRKPYSVILFDEIEKAHDDVFNIFLQILDDGRLTDNKGKTVDFKNCIIIMTSNIGSSYLLENKKEDGIDETVKNKVSNALKDRFKPEFLNRLDDIIMFKPLTNREITKIIDIFLQDIENRLKDRNITLIVTE 804          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_CLOAB (Chaperone protein clpB OS=Clostridium acetobutylicum GN=clpB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.386e-35
Identity = 66/138 (47.83%), Postives = 102/138 (73.91%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTEAVRR+PYSV+LFDE+EKAH  VFN  LQ+ DDGRLTD +G T+DF+N++IIMTSN+G+EHLL+        +  +D+V+ E++  F+PE LNRLD+I++F PLS  ++ +   + ++++  +L E+ + + + +
Sbjct:  667 QLTEAVRRKPYSVILFDEIEKAHSDVFNIFLQIFDDGRLTDNKGNTIDFKNSIIIMTSNIGSEHLLNNKGVSNVDEETKDKVMNELKGRFKPEFLNRLDDIIMFKPLSINEIGKIIDIFLENIKSKLKEKNIKIDIAE 804          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_BLOFL (Chaperone protein clpB OS=Blochmannia floridanus GN=clpB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.386e-35
Identity = 76/130 (58.46%), Postives = 94/130 (72.31%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERG 394
            LTE++RRRPYS+VL DE+EKAH+ VFN LLQVLDDGRLTD QGR VDF NTVIIMTSNLG++ L+            +  VL  V ++FRPE +NR+DEIVVF PLS + L +   +Q+K +  RL ERG
Sbjct:  664 LTESIRRRPYSIVLLDEIEKAHLDVFNILLQVLDDGRLTDNQGRMVDFNNTVIIMTSNLGSD-LIQKKFDISDYDTMKKTVLNVVNQYFRPEFINRIDEIVVFHPLSIKHLIDIANIQLKYLYSRLEERG 792          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPC_MYCTU (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium tuberculosis GN=clpC PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.647e-35
Identity = 76/146 (52.05%), Postives = 103/146 (70.55%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL-------LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            QLTE VRR+P+SVVLFDE+EKAH  ++N+LLQVL+DGRLTDGQGRTVDF+NTV+I TSNLG   +        S   G+   +  + +V  E++KHFRPE LNR+D+I+VF  L+ E++     L +  VA +L  + +AL +TDA
Sbjct:  609 QLTEKVRRKPFSVVLFDEIEKAHQEIYNSLLQVLEDGRLTDGQGRTVDFKNTVLIFTSNLGTSDISKPVGLGFSKGGGENDYERMKQKVNDELKKHFRPEFLNRIDDIIVFHQLTREEIIRMVDLMISRVAGQLKSKDMALVLTDA 754          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPC_MYCBO (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium bovis GN=clpC PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.647e-35
Identity = 76/146 (52.05%), Postives = 103/146 (70.55%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL-------LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            QLTE VRR+P+SVVLFDE+EKAH  ++N+LLQVL+DGRLTDGQGRTVDF+NTV+I TSNLG   +        S   G+   +  + +V  E++KHFRPE LNR+D+I+VF  L+ E++     L +  VA +L  + +AL +TDA
Sbjct:  609 QLTEKVRRKPFSVVLFDEIEKAHQEIYNSLLQVLEDGRLTDGQGRTVDFKNTVLIFTSNLGTSDISKPVGLGFSKGGGENDYERMKQKVNDELKKHFRPEFLNRIDDIIVFHQLTREEIIRMVDLMISRVAGQLKSKDMALVLTDA 754          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_PLEBO (Chaperone protein clpB OS=Plectonema boryanum GN=clpB PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 1.260e-34
Identity = 73/139 (52.52%), Postives = 102/139 (73.38%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            QLTEAVRRRPYSV+LFDE+EKAH  VFN +LQ+LDDGR+TD QGRTVDF+NT+IIMTSN+G++++          +    +V++ +  +FRPE LNR+DEI++F  L   QL+E  ++Q   +  RLA R ++L ++DA
Sbjct:  668 QLTEAVRRRPYSVILFDEIEKAHPDVFNVMLQILDDGRVTDSQGRTVDFKNTIIIMTSNIGSQYIFEYGGDDDRYEEILSRVMEAMLSNFRPEFLNRIDEIIIFHSLQKAQLREIVKIQTHRLESRLA-RKMSLKLSDA 805          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB_BDEBA (Chaperone protein clpB OS=Bdellovibrio bacteriovorus GN=clpB PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.260e-34
Identity = 77/134 (57.46%), Postives = 98/134 (73.13%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVAL 403
            QLTE+VRRRPYSVVL DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDF+NTV+IMTSN+G++ +L   M +      R+ V + +R+ FRPE LNR+DEIV+F  L   Q+    ++Q+  VA RL  + + +
Sbjct:  663 QLTESVRRRPYSVVLLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVLIMTSNVGSQSILDPGMSE---NQKREAVNEALRERFRPEFLNRIDEIVMFKSLGEAQISGIVKVQLDLVAQRLRAKKIGI 793          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNPX (Chaperone protein clpB 2 OS=Synechococcus sp. (strain WH8102) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.260e-34
Identity = 80/143 (55.94%), Postives = 99/143 (69.23%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGA----EHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            QLTEAVRRRPY+V+L DEVEKAH  VFN LLQVLDDGRLTD QG TVDFR+TV++MTSNL +    EH  SG      +Q    QV   +   FRPE LNR+DE++ F PL  + L    RLQ+ D++  +AE+G++L V DA
Sbjct:  697 QLTEAVRRRPYAVLLLDEVEKAHPDVFNLLLQVLDDGRLTDSQGLTVDFRHTVVVMTSNLASPVILEHARSGSSDDAQLQ---QQVDAALSSQFRPEFLNRIDEVIRFRPLKVKDLVRIVRLQLADLSTLMAEQGLSLEVDDA 836          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPC_STAHJ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpC PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.645e-34
Identity = 76/145 (52.41%), Postives = 100/145 (68.97%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL-------LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTD 415
            QLTE VRR+PYSV+LFDE+EKAH  VFN LLQVLDDG LTD +GR VDFRNTVIIMTSN+GA+ L         G       +  R  +++E++  FRPE LNR+D+I+VF  LS ++LKE   + +  +  RL+E+ + + VTD
Sbjct:  601 QLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRQVDFRNTVIIMTSNVGAQELQDQRFAGFGGGSEGHDYETIRKTMMKELKNSFRPEFLNRVDDIIVFHKLSKDELKEIVTMMVNKLTQRLSEQDINIVVTD 745          
BLAST of FC930698 vs. ExPASy Swiss-Prot
Match: CLPC_STAS1 (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=clpC PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.149e-34
Identity = 77/146 (52.74%), Postives = 104/146 (71.23%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL----LSGMMGKVTMQ---VARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLKEGGRLQMKDVAIRLAERGVALAVTDA 418
            QLTE VRR+PYSV+LFDE+EKAH  VFN LLQVLDDG LTD +GR VDFRNTVIIMTSN+GA+ L     +G  G    Q     R  +++E++  FRPE LNR+D+I+VF  LS ++LK+   + +  +  RL+E+ + ++VT+A
Sbjct:  601 QLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRRVDFRNTVIIMTSNVGAQELQDQRFAGFGGATEGQDYESIRKTMMKELKNAFRPEFLNRVDDIIVFHKLSKDELKQIVTMMVNKLTNRLSEQDINISVTEA 746          
The following BLAST results are available for this feature:
BLAST of FC930698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
CLPB_CLOTE7.386e-3549.28Chaperone protein clpB OS=Clostridium tetani GN=cl... [more]
CLPB_CLOAB7.386e-3547.83Chaperone protein clpB OS=Clostridium acetobutylic... [more]
CLPB_BLOFL7.386e-3558.46Chaperone protein clpB OS=Blochmannia floridanus G... [more]
CLPC_MYCTU9.647e-3552.05Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPC_MYCBO9.647e-3552.05Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPB_PLEBO1.260e-3452.52Chaperone protein clpB OS=Plectonema boryanum GN=c... [more]
CLPB_BDEBA1.260e-3457.46Chaperone protein clpB OS=Bdellovibrio bacteriovor... [more]
CLPB2_SYNPX1.260e-3455.94Chaperone protein clpB 2 OS=Synechococcus sp. (str... [more]
CLPC_STAHJ1.645e-3452.41ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAS12.149e-3452.74ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC34010C12EF PostHarvC1 Citrus clementina cDNA clone C34010C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930698 ID=FC930698; Name=FC930698; organism=Citrus clementina; type=EST; length=420bp
ACAACTTACTGAGGCTGTGAGGAGAAGGCCTTATAGTGTTGTGTTGTTTG
ATGAAGTGGAAAAAGCTCACATTTCTGTGTTTAATACTCTACTTCAAGTT
TTGGATGATGGAAGATTAACTGATGGCCAAGGCCGTACAGTTGACTTTAG
AAACACAGTTATTATCATGACCTCAAACCTTGGAGCAGAGCACCTCTTAT
CGGGAATGATGGGCAAGGTCACAATGCAAGTTGCACGTGATCAAGTCCTG
CAAGAGGTGAGGAAGCACTTTAGGCCAGAGCTGTTGAACCGTCTTGATGA
GATTGTTGTGTTTGATCCTCTCTCACACGAACAACTAAAGGAAGGTGGCA
GGCTGCAAATGAAGGATGTTGCAATTCGTCTTGCTGAGAGGGGTGTAGCA
TTGGCAGTAACTGATGCTGC
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