FC930711

Overview
NameFC930711
Unique NameFC930711
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13B_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana tabacum PE=1 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 1.007e-51
Identity = 112/223 (50.22%), Postives = 143/223 (64.13%), Query Frame = 1
Query:   55 NTPPMXXXXXXXXXXXXXXXDTTSAQ-IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKP--GDNF-AQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGD-RQISLDYALF 708
            NTP M               D   AQ IGVCYGMLG+NLP+  +VI LY   NI R+RLYDPN   L+AL+GSNIEV+LGLPN  ++ IAS    A  WVQ N+++F  +VK KYIAVGNE  P  G ++   +L PAM NI  AI  A LG+ IKVST+++   +  S PPS GSF+   R   DP++ FL + ++PLLVN+YPYF+  G+  QISL Y+LF
Sbjct:    9 NTPQMAAITLLGLLLVASSIDIAGAQSIGVCYGMLGNNLPNHWEVIQLYKSRNIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAIGEAGLGNNIKVSTSVDMTLIGNSYPPSQGSFRNDARWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYSLF 231          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13B_BRACM (Glucan endo-1,3-beta-glucosidase OS=Brassica campestris GN=BGL PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.315e-51
Identity = 104/199 (52.26%), Postives = 140/199 (70.35%), Query Frame = 1
Query:  115 DTTSAQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGDRQISLDYALFR 711
            DTT+ QIGVC+G +G+N+P+  +V+A++ Q +I RMR+Y PN + L ALRGSNIE +L +PN  L+ +A +QAEANTWV+DN+Q + N+V+FKYI+VGNE KPG+  A  L+ AM+NI  A++ A L S IKVST    G    + PPS G FK  YR  L PVI FL   +SPLLVN+Y YF    +R +SL +AL +
Sbjct:   21 DTTAGQIGVCFGQMGNNIPNPSEVVAMFKQYSIPRMRMYGPNPDALNALRGSNIEFILDVPNGDLKRLADSQAEANTWVRDNVQKY-NDVRFKYISVGNEVKPGEPGAAALIQAMQNIDRALSAAGL-SNIKVSTTTFMGPSRNTYPPSRGRFKDEYRNFLQPVIGFLVNKRSPLLVNIYTYFGY-MNRDVSLQFALLQ 216          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13F_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GLB OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.929e-51
Identity = 111/223 (49.78%), Postives = 143/223 (64.13%), Query Frame = 1
Query:   55 NTPPMXXXXXXXXXXXXXXXDTTSAQ-IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKP--GDNF-AQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGD-RQISLDYALF 708
            NTP M               +   AQ IGVCYGMLG+NLP+  +VI LY   NI R+RLYDPN   L+AL+GSNIEV+LGLPN  ++ IAS    A  WVQ N+++F  +VK KYIAVGNE  P  G ++   +L PAM NI  AI  A LG+ IKVST+++   +  S PPS GSF+   R   DP++ FL + ++PLLVN+YPYF+  G+  QISL Y+LF
Sbjct:    8 NTPQMAAITLLGLLLVASTIEIAGAQSIGVCYGMLGNNLPNHWEVIQLYKSRNIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAIGEAGLGNNIKVSTSVDMTLIGNSYPPSQGSFRNDARWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYSLF 230          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13B_NICPL (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana plumbaginifolia GN=GN2 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.825e-51
Identity = 110/223 (49.33%), Postives = 144/223 (64.57%), Query Frame = 1
Query:   55 NTPPMXXXXXXXXXXXXXXXDTTSAQ-IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKP--GDNF-AQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGD-RQISLDYALF 708
            NTP M               +   A+ IGVCYGMLG+NLP+  +VI LY   NI R+RLYDPN   L+AL+GSNIEV+LGLPN  ++ IAS    A  WVQ N+++F  +VK KYIAVGNE  P  G ++   +L PAM NI  AI  A LG+ IKVST+++   +  S PPS GSF+   R  +DP++ FL + ++PLLVN+YPYF+  G+  QISL Y+LF
Sbjct:    8 NTPQMAAITLLGLLLVASSIEIAGAESIGVCYGMLGNNLPNHWEVIQLYKSRNIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAIGEAGLGNNIKVSTSVDMTLIGNSYPPSQGSFRNDARWFVDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYSLF 230          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13E_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GGIB50 OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.996e-51
Identity = 111/223 (49.78%), Postives = 143/223 (64.13%), Query Frame = 1
Query:   55 NTPPMXXXXXXXXXXXXXXXDTTSAQ-IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKP--GDNF-AQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGD-RQISLDYALF 708
            NTP M               D   AQ IGVCYGMLG+NLP+  +VI LY   NI R+RLYDPN   L+AL+GSNIEV+LGLPN  ++ IAS    A  WVQ N+++F  +VK KYIAVGNE  P  G ++   +L PAM NI  AI  A LG+ IKVST+++   +  S PPS GSF+   R  +D ++ FL + ++PLLVN+YPYF+  G+  QISL Y+LF
Sbjct:    8 NTPQMAAITLLGLLLVASSIDIAGAQSIGVCYGMLGNNLPNHWEVIQLYKSRNIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAIGEAGLGNNIKVSTSVDMTLIGNSYPPSQGSFRNDARWFVDAIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYSLF 230          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E131_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 1 (Fragment) OS=Solanum tuberosum GN=GLUB1 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.454e-50
Identity = 103/196 (52.55%), Postives = 133/196 (67.86%), Query Frame = 1
Query:  133 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKP---GDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGD-RQISLDYALF 708
            +GVCYGM+G+NLPS  +VI LY   NI R+RLYDPN   L ALRGSNIEV+LGLPN  ++ IAS    A  WVQ N+++F  +VK KYIAVGNE  P     +   + VPA+ NI  A+  A LG+ IKVST+++   +  S PPS GSF+   R   DP++ FL + ++PLLVN+YPYF+  G+  QISL YALF
Sbjct:    1 LGVCYGMMGNNLPSHSEVIQLYKSRNIGRLRLYDPNHGALNALRGSNIEVILGLPNVDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSSLTSFQVPALVNIYKAVGEAGLGNDIKVSTSVDMTLIGNSYPPSQGSFRNDVRWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALF 196          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13A_SOLLC (Glucan endo-1,3-beta-glucosidase A OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.976e-49
Identity = 101/201 (50.25%), Postives = 134/201 (66.67%), Query Frame = 1
Query:  121 TSAQ-IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKPG---DNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGDRQISLDYALFR 711
            T AQ IGVCYG + +NLPS  DVI LYN NNI++MR+Y P   V  AL+GSNIE++L +PN  L+ +A N ++   WVQDNI+N   +VKFKYIAVGNE  PG     +A+++ PAM NI NA++ A L +QIKVSTA   G L  + PP    F+  Y+  ++P+I FL+ +  PLL N+YPYF    D  + L YALF+
Sbjct:   21 TGAQPIGVCYGKIANNLPSDQDVIKLYNSNNIKKMRIYFPETNVFNALKGSNIEIILDVPNQDLEALA-NPSKRQGWVQDNIRNHFPDVKFKYIAVGNEVDPGRDSGKYARFVGPAMENIYNALSSAGLQNQIKVSTATYLGLLTNTYPPRDSIFRDEYKSFINPIIGFLSRHNLPLLANIYPYFG-HADDNVPLPYALFK 219          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13K_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GL161 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.750e-47
Identity = 92/195 (47.18%), Postives = 129/195 (66.15%), Query Frame = 1
Query:  133 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKP--GDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFA-IDGDRQISLDYALF 708
            IGVCYG   +NLPS  DVI LYN N IR++R+Y P+K + +AL GSNIE++LG+PN  L+ +A N + AN WVQDNI++    VKFKYI++GN+  P   D ++++L+ AM+N+ NA+  A L   IKVST    G L  + PP    F++ ++  ++P+I FL  N  PLL N+YPYF  +     +SL YALF
Sbjct:   12 IGVCYGKAANNLPSDQDVINLYNANGIRKLRIYYPDKNIFKALNGSNIEIILGVPNQDLEALA-NSSIANGWVQDNIRSHFPYVKFKYISIGNKVSPTNNDQYSEFLLQAMKNVYNALAAAGLQDMIKVSTVTYSGVLANTYPPERSIFREEFKSFINPIIQFLARNNLPLLANVYPYFVHVSNTADVSLSYALF 205          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13G_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GI9 OS=Nicotiana tabacum GN=PR2 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.837e-46
Identity = 98/195 (50.26%), Postives = 128/195 (65.64%), Query Frame = 1
Query:  133 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKPGDN--FAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFA-IDGDRQISLDYALF 708
            IGVCYG   +NLPS  DVI LYN N IR+MR+Y+P+  V  ALRGSNIE++L +P   LQ + ++ + AN WVQDNI N   +VKFKYIAVGNE  PG+N  +A ++ PAM+N+ NA+  A L  QIKVSTA   G L  + PP    F+  +   ++P+I FL ++  PLL N+YPYF  I     + L YALF
Sbjct:   32 IGVCYGKHANNLPSDQDVINLYNANGIRKMRIYNPDTNVFNALRGSNIEIILDVPLQDLQSL-TDPSRANGWVQDNIINHFPDVKFKYIAVGNEVSPGNNGQYAPFVAPAMQNVYNALAAAGLQDQIKVSTATYSGILANTYPPKDSIFRGEFNSFINPIIQFLVQHNLPLLANVYPYFGHIFNTADVPLSYALF 225          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13L_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GL153 OS=Nicotiana tabacum GN=GGL4 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.320e-46
Identity = 93/195 (47.69%), Postives = 131/195 (67.18%), Query Frame = 1
Query:  133 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKPGDN--FAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFA-IDGDRQISLDYALF 708
            IGVCYG + +NLPS+ DVI LY  N IR+MR+Y P+K + +AL+GSNIE++L +PN  L+ +A N + AN WVQDNI++    VKFKYI++GNE  P +N  ++Q+L+ AM N+ NA+  + L  +IKV+TA   G L  + PP A  F+  +   ++P+I FL +N  PLL N+YPYF  I     + L YALF
Sbjct:   32 IGVCYGKIANNLPSEQDVINLYKANGIRKMRIYYPDKNIFKALKGSNIEIILDVPNQDLEALA-NSSIANGWVQDNIRSHFPYVKFKYISIGNEVSPINNGQYSQFLLHAMENVYNALAASGLQDKIKVTTATYSGLLANTYPPKASIFRGEFNSFINPIIQFLAQNNLPLLANVYPYFVHISNTADVPLSYALF 225          
The following BLAST results are available for this feature:
BLAST of FC930711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
E13B_TOBAC1.007e-5150.22Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13B_BRACM1.315e-5152.26Glucan endo-1,3-beta-glucosidase OS=Brassica campe... [more]
E13F_TOBAC2.929e-5149.78Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13B_NICPL3.825e-5149.33Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13E_TOBAC4.996e-5149.78Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E131_SOLTU1.454e-5052.55Glucan endo-1,3-beta-glucosidase, basic isoform 1 ... [more]
E13A_SOLLC7.976e-4950.25Glucan endo-1,3-beta-glucosidase A OS=Solanum lyco... [more]
E13K_TOBAC9.750e-4747.18Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13G_TOBAC2.837e-4650.26Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13L_TOBAC6.320e-4647.69Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]

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Properties
Property NameValue
Genbank descriptionC34010E02EF PostHarvC1 Citrus clementina cDNA clone C34010E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930711 ID=FC930711; Name=FC930711; organism=Citrus clementina; type=EST; length=711bp
GATCCCACTTTTCCATTTGCATTTTTCTCCCTGGCTAAATTCTTATCCTC
CCTCAATACCCCTCCAATGGTTTCCGTCGTCTTGCTACTTCTTGGCCTGC
TAGTGGCTACTCTAGACACTACAAGTGCTCAAATAGGTGTTTGTTATGGA
ATGCTTGGTGACAACTTACCATCAAAACCAGATGTCATAGCTCTCTACAA
CCAAAACAACATCAGAAGAATGAGACTCTATGATCCAAACAAAGAAGTTC
TAGAAGCTCTCCGTGGCTCCAACATTGAAGTTTTGCTAGGCCTTCCCAAC
GATAAGCTCCAGATAATCGCTTCCAATCAAGCCGAAGCGAACACTTGGGT
CCAAGACAACATCCAAAATTTTGTTAACAATGTCAAGTTCAAATACATCG
CTGTAGGAAATGAAGCAAAACCAGGAGACAACTTCGCTCAGTATCTTGTT
CCCGCCATGAGAAACATACAAAATGCCATTAACGGAGCTAACCTTGGAAG
CCAAATCAAAGTTTCCACTGCCATTGAATTCGGAGCTCTTGAAGTATCCT
CTCCGCCGTCAGCAGGCTCCTTTAAGCAAGCTTACAGACCAATTCTTGAT
CCCGTCATTACCTTCCTCAACGAAAACAAATCCCCGTTGCTTGTTAACTT
GTACCCTTACTTCGCAATTGATGGCGACCGTCAAATATCTCTTGATTATG
CACTGTTTCGG
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