FC930711

Overview
NameFC930711
Unique NameFC930711
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13B_VITVI (Glucan endo-1,3-beta-glucosidase OS=Vitis vinifera GN=GSVIVT00022223001 PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.402e-45
Identity = 93/167 (55.69%), Postives = 122/167 (73.05%), Query Frame = 1
Query:  220 MRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKP-GDN--FAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGDRQ-ISLDYALF 708
            MR+YDPN + L+AL+GS IE++L +PN  LQ +AS+ + A+TWVQ+N+ N+ ++VKF+YIAVGNE  P G N  +AQY++PAM+N+Q+AI  A L  QIKVSTA     L  S PPSAGSF       ++P+I+FL EN SPLL N+YPYF+  GD Q I LDYALF
Sbjct:    1 MRIYDPNSDTLQALKGSGIELILDVPNTSLQSLASDASAASTWVQNNVVNYASDVKFRYIAVGNEVLPTGSNAQYAQYVLPAMKNVQSAITSAGLQGQIKVSTATYSSVLGTSYPPSAGSFSSDASSFINPIISFLAENGSPLLANIYPYFSYTGDTQNIRLDYALF 167          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E133_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 3 (Fragment) OS=Solanum tuberosum GN=GLUB3 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.137e-45
Identity = 97/187 (51.87%), Postives = 124/187 (66.31%), Query Frame = 1
Query:  160 DNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKP---GDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGD-RQISLDYALF 708
            +NLPS  +VI LY   NI R+RLYDPN   L ALRGSNIEV+LGLPN  ++ IAS    A  WVQ N+++F  +VK KYIAVGNE  P     +   + VPA+ NI  AI  A LG+ IKVST+++   +  S PPS GSF+   R   DP++ FL + ++PLLVN+YPYF+  G+  QISL YALF
Sbjct:    1 NNLPSHSEVIQLYKSRNIGRLRLYDPNHGALNALRGSNIEVILGLPNVDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSSLTSFQVPALVNIYKAIGEAGLGNDIKVSTSVDMTLIGNSYPPSQGSFRNDVRWFTDPIVGFLRDTRAPLLVNIYPYFSYSGNPGQISLPYALF 187          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13D_TOBAC (Glucan endo-1,3-beta-glucosidase OS=Nicotiana tabacum GN=SP41B PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.988e-45
Identity = 93/197 (47.21%), Postives = 130/197 (65.99%), Query Frame = 1
Query:  127 AQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKPGDN--FAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFA-IDGDRQISLDYALF 708
            + IGVCYG + +NLPS+ DVI LY  N IR+MR+Y P+  + +AL GSNIE++L +PN  L+ +A N + AN WVQDNI++    VKFKYI++GNE  P +N  ++Q+L+ AM+N+ NA+  A L  +IKVSTA   G L  + PP    F++  +  ++P+I FL  N  PLL N+YPYF  I     + L YALF
Sbjct:   34 SNIGVCYGEIANNLPSEQDVINLYKANGIRKMRIYYPDTNIFKALNGSNIEIILEVPNQDLEALA-NSSIANGWVQDNIRSHFPYVKFKYISIGNEVSPTNNGQYSQFLLHAMKNVYNALAAAGLQDKIKVSTATYSGLLANTYPPKDSIFREELKSFINPIIEFLARNNLPLLANIYPYFGHIYNTVDVPLSYALF 229          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13C_TOBAC (Glucan endo-1,3-beta-glucosidase OS=Nicotiana tabacum GN=SP41A PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.033e-44
Identity = 90/197 (45.69%), Postives = 130/197 (65.99%), Query Frame = 1
Query:  127 AQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKPGDN--FAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFA-IDGDRQISLDYALF 708
            + IGVCYG + +NLPS+ DVI LY  N IR+MR+Y+ +  + ++L GSNIE++L +PN  L+ +A N + AN WVQDNI++    VKFKYI++GNE  P +N  ++Q+L+ AM N+ NA+  A L  +IKV+TA   G L  + PP    F++ ++  ++P+I FL  N  PLL N+YPYF  I     + L YALF
Sbjct:   34 SNIGVCYGKIANNLPSEQDVINLYKANGIRKMRIYNSDTNIFKSLNGSNIEIILDVPNQDLEALA-NSSIANGWVQDNIRSHFPYVKFKYISIGNEVSPSNNGQYSQFLLHAMENVYNALAAAGLQDKIKVTTATYSGLLANTYPPKDSIFREEFKSFINPIIEFLARNNLPLLANIYPYFGHIYNTVDVPLSYALF 229          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.364e-40
Identity = 80/196 (40.82%), Postives = 125/196 (63.78%), Query Frame = 1
Query:  130 QIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEA--KPGDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAI-DGDRQISLDYALF 708
            ++GVCYG   D+LP+   V+ L  Q+NI+ +R+YD N +VL+A   ++IE+++G+PN  L   + +Q+  +TW+++++  +    K  YI VG E+   P  N + ++VPAM+N+  A+    L  +IKVST +  G L  S PPSAG+F  +Y   L P++ FL ENKSP +++LYPY+A  D    +SLDY LF
Sbjct:   25 KVGVCYGRSADDLPTPSKVVQLIQQHNIKYVRIYDYNSQVLKAFGNTSIELMIGVPNSDLNAFSQSQSNVDTWLKNSVLPYYPTTKITYITVGAESTDDPHINASSFVVPAMQNVLTALRKVGLSRRIKVSTTLSLGILSRSFPPSAGAFNSSYAYFLRPMLEFLAENKSPFMIDLYPYYAYRDSPNNVSLDYVLF 220          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13B_HORVU (Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.359e-39
Identity = 91/199 (45.73%), Postives = 126/199 (63.32%), Query Frame = 1
Query:  118 TTSAQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAI-DGDRQISLDYALFR 711
            T+   IGVCYG++G+NLPS+ DV+ LY    I  MR+Y  + + L ALR S I ++L + ND+L  IA++ + A +WVQ+N++ +   V  KYIA GNE + G    Q ++PAMRN+  A++ A LG+ IKVST+I F  +  S PPSAG FK AY   +  V   L    +PLL N+YPYFA  D    ISL+YA F+
Sbjct:   24 TSVQSIGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLANIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQGG--ATQSILPAMRNLNAALSAAGLGA-IKVSTSIRFDEVANSFPPSAGVFKNAY---MTDVARLLASTGAPLLANVYPYFAYRDNPGSISLNYATFQ 216          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13E_HORVU (Glucan endo-1,3-beta-glucosidase GV OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.667e-38
Identity = 87/192 (45.31%), Postives = 122/192 (63.54%), Query Frame = 1
Query:  136 GVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPN-DKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGDR--QISLDYA 702
            GVCYGM+GDNLPS+ DV+ LY   NI  MR+Y+P++E L ALRGS I ++L +   D+++ +  + + A  WV+ N+Q +  +V  +YIAVGNE   GD     ++ AM+N+ NA+  ANL S IKVSTA+ F  +  S PPS+G F+      L P+  FL+   +P L N+YPYFA   DR   I L+YA
Sbjct:    6 GVCYGMVGDNLPSRSDVVQLYKSRNIHAMRIYNPDQEALTALRGSGIFLILDVGGVDEVRRLGRDPSYAAGWVRSNVQAYYPDVLIRYIAVGNEVPAGD--TGIILLAMQNVHNALASANLSSSIKVSTAVRFDVITNSFPPSSGVFRDPSG--LVPIARFLDSTGAPFLANVYPYFAYRDDRGQNIRLNYA 193          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13F_HORVU (Putative glucan endo-1,3-beta-glucosidase GVI (Fragment) OS=Hordeum vulgare PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.714e-38
Identity = 85/192 (44.27%), Postives = 121/192 (63.02%), Query Frame = 1
Query:  133 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGD-RQISLDYAL 705
            IGV YGM+G +LPS   V+ALY  NNI  +R++ P+  VLEALR S + V+LG  N  L  +AS+ + A +WV   +Q F   V F+YI  GNE  PG++ A  ++PAM+N++ A+  A  G  + V+TA+    L  S PPS G+F +A  P + P+++ L  + +PLLVN+YPYFA   D   + LDYAL
Sbjct:    7 IGVNYGMMGSDLPSPDKVVALYKANNITDVRIFHPDTNVLEALRNSGLGVVLGTLNSDLAPLASDASYAASWVHSYVQPFAGAVSFRYINAGNEVIPGES-AALVLPAMKNLEAALQAA--GLSVPVTTAMATSVLGTSYPPSQGTFSEAALPTVGPIVSHLASSGTPLLVNVYPYFAYSADPSSVRLDYAL 195          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: GUB2_HORVU (Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.004e-37
Identity = 84/193 (43.52%), Postives = 119/193 (61.66%), Query Frame = 1
Query:  133 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFA-IDGDRQISLDYALF 708
            IGVCYGM  +NLP+   V++++  N I+ MRLY PN+  L+A+ G+ I V++G PND L  +A++ A A +WV+ NIQ +   V F+Y+ VGNE   G    + LVPAM+N+  A+  A LG  IKV+T++    L V SPPSAGSF       + PV+ FL    +PL+ N+YPY A       + + YALF
Sbjct:    7 IGVCYGMSANNLPAASTVVSMFKFNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLSNLAASPAAAASWVKSNIQAY-PKVSFRYVCVGNEVAGG--ATRNLVPAMKNVHGALVAAGLG-HIKVTTSVSQAILGVFSPPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIYPYLAWAYNPSAMDMGYALF 195          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13A_HORVU (Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vulgare PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.661e-36
Identity = 89/195 (45.64%), Postives = 119/195 (61.03%), Query Frame = 1
Query:  133 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGL-PNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAI-DGDRQISLDYALFR 711
            IGVCYG++ +NLP   +V+ LY  N +  MR+Y  + + L ALRGS I ++L +  ND L  +A+N + A  WV+DN++ +   V  KYIA GNE   GD   Q +VPAMRN+  A+    LG+ IKVST+I F A+  + PPS G F QAY   +  V   L    +PLL N+YPYFA  D  R I L+YA FR
Sbjct:    2 IGVCYGVVANNLPPANEVVQLYRSNGLTGMRIYFADAKALSALRGSGIGLILDVGGNDVLASLAANASNAANWVRDNVRPYYPAVNIKYIAAGNEVWGGD--TQNIVPAMRNLGAALKAPGLGT-IKVSTSIRFDAVTNTFPPSNGVFAQAY---MTDVARLLASTGAPLLTNVYPYFAYKDNPRDIQLNYATFR 190          
The following BLAST results are available for this feature:
BLAST of FC930711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
E13B_VITVI2.402e-4555.69Glucan endo-1,3-beta-glucosidase OS=Vitis vinifera... [more]
E133_SOLTU3.137e-4551.87Glucan endo-1,3-beta-glucosidase, basic isoform 3 ... [more]
E13D_TOBAC6.988e-4547.21Glucan endo-1,3-beta-glucosidase OS=Nicotiana taba... [more]
E13C_TOBAC2.033e-4445.69Glucan endo-1,3-beta-glucosidase OS=Nicotiana taba... [more]
E1313_ARATH1.364e-4040.82Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]
E13B_HORVU3.359e-3945.73Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vu... [more]
E13E_HORVU1.667e-3845.31Glucan endo-1,3-beta-glucosidase GV OS=Hordeum vul... [more]
E13F_HORVU3.714e-3844.27Putative glucan endo-1,3-beta-glucosidase GVI (Fra... [more]
GUB2_HORVU7.004e-3743.52Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=... [more]
E13A_HORVU2.661e-3645.64Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vul... [more]

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Properties
Property NameValue
Genbank descriptionC34010E02EF PostHarvC1 Citrus clementina cDNA clone C34010E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930711 ID=FC930711; Name=FC930711; organism=Citrus clementina; type=EST; length=711bp
GATCCCACTTTTCCATTTGCATTTTTCTCCCTGGCTAAATTCTTATCCTC
CCTCAATACCCCTCCAATGGTTTCCGTCGTCTTGCTACTTCTTGGCCTGC
TAGTGGCTACTCTAGACACTACAAGTGCTCAAATAGGTGTTTGTTATGGA
ATGCTTGGTGACAACTTACCATCAAAACCAGATGTCATAGCTCTCTACAA
CCAAAACAACATCAGAAGAATGAGACTCTATGATCCAAACAAAGAAGTTC
TAGAAGCTCTCCGTGGCTCCAACATTGAAGTTTTGCTAGGCCTTCCCAAC
GATAAGCTCCAGATAATCGCTTCCAATCAAGCCGAAGCGAACACTTGGGT
CCAAGACAACATCCAAAATTTTGTTAACAATGTCAAGTTCAAATACATCG
CTGTAGGAAATGAAGCAAAACCAGGAGACAACTTCGCTCAGTATCTTGTT
CCCGCCATGAGAAACATACAAAATGCCATTAACGGAGCTAACCTTGGAAG
CCAAATCAAAGTTTCCACTGCCATTGAATTCGGAGCTCTTGAAGTATCCT
CTCCGCCGTCAGCAGGCTCCTTTAAGCAAGCTTACAGACCAATTCTTGAT
CCCGTCATTACCTTCCTCAACGAAAACAAATCCCCGTTGCTTGTTAACTT
GTACCCTTACTTCGCAATTGATGGCGACCGTCAAATATCTCTTGATTATG
CACTGTTTCGG
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