FC930711

Overview
NameFC930711
Unique NameFC930711
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13B_MAIZE (Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Zea mays PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.555e-35
Identity = 84/193 (43.52%), Postives = 117/193 (60.62%), Query Frame = 1
Query:  133 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGD-RQISLDYALF 708
            IGVCYG+ GDNLP   DV+ LY  N I  +R+Y P+   L AL G++I +++ +PN  L  +AS+ + A  WVQ N+Q    +   +YIAVGNE   GD  +  ++PAM+N+  A+  A LG  IKVSTA++    +   PPS G+F Q Y   + P   +L    +PLL N+YPYF+  G+  QI L YALF
Sbjct:   30 IGVCYGVNGDNLPPASDVVQLYQSNGINLLRIYFPDANPLNALSGTSIGLIMDVPNTDLASLASDPSAAAAWVQSNVQASRRSA-CRYIAVGNEVSGGDTGS--ILPAMQNLNAALANAGLGGSIKVSTAVQSDVTQ-GFPPSQGTFSQGY---MAPSRQYLQSTGAPLLSNVYPYFSYVGNPAQIDLKYALF 215          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.555e-35
Identity = 77/197 (39.09%), Postives = 120/197 (60.91%), Query Frame = 1
Query:  124 SAQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNE-AKPGDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAI-DGDRQISLDYALF 708
            +++IG+CYG   DNLPS   V  L    NI+ +R+YD N +VL+A   + IE+++G+PN  L   A  Q+  +TW+ +NI  +  + K   I+VG E  +  DN    ++PAMRNI  A+  + L  +IK+S++     L  S PPS+ SF + +   L P++ FL EN+SP +++LYPY+A  D   ++ L+YALF
Sbjct:   24 ASKIGICYGRNADNLPSPNRVSELIQHLNIKFVRIYDANIDVLKAFANTGIELMIGVPNADLLAFAQFQSNVDTWLSNNILPYYPSTKITSISVGLEVTEAPDNATGLVLPAMRNIHTALKKSGLDKKIKISSSHSLAILSRSFPPSSASFSKKHSAFLKPMLEFLVENESPFMIDLYPYYAYRDSTEKVPLEYALF 220          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13D_HORVU (Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.754e-33
Identity = 79/195 (40.51%), Postives = 116/195 (59.49%), Query Frame = 1
Query:  133 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVN-NVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGD-RQISLDYALFR 711
            IGVCYG++ +NLP + +V+ LY    I  MR+Y    + + AL GS I ++LG  N+ + ++A + + A +WV  N++ + +  V  +YIAVGNE   G   AQ ++ AMRN+  A+  A LG  IKVSTA+ F  +  S PPS+  F Q   P +  +   L    +PLL N+YPYFA  G+ R I L+YA F+
Sbjct:    1 IGVCYGIIANNLPPRREVVQLYRSKGITNMRIYSVQPQAIRALHGSGIRLMLGTTNNDVAVLAGSLSAATSWVHANVKPYHSAGVTIRYIAVGNEITGG--AAQSILAAMRNLNKALAAARLGG-IKVSTAVRFDVITNSFPPSSAVFAQ---PYMVDIARHLASTNAPLLANVYPYFAYSGNPRDIKLNYATFQ 189          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E1311_ARATH (Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.977e-32
Identity = 75/201 (37.31%), Postives = 116/201 (57.71%), Query Frame = 1
Query:  118 TTSAQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNE--AKPGDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGD-RQISLDYALFR 711
            TT+  IGV YG +GDNLPS  DVI L       +++LYD N ++L+A   + IE ++GL N+ L  +  + ++A TW++ N+  F+       I +GNE  A    +    L+PAM+ + +A+  A L  QI V+TA     L+ S PPSAG F+      L P++ F  +  SP L+N YP+FA  G+ +++ LD+ LF+
Sbjct:   24 TTTTSIGVNYGQIGDNLPSPTDVIPLIKSIGATKVKLYDANPQILKAFSNTGIEFIIGLGNEYLSKM-KDPSKALTWIKQNVTPFLPATNITCITIGNEILALNDSSLTTNLLPAMQGVHSALITAGLSDQISVTTAHSLSILKSSFPPSAGEFQPDLLDSLTPILEFHRKTDSPFLINAYPFFAYKGNPKEVPLDFVLFQ 223          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13C_HORVU (Glucan endo-1,3-beta-glucosidase GIII OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.194e-32
Identity = 85/194 (43.81%), Postives = 115/194 (59.28%), Query Frame = 1
Query:  133 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKPGDNFAQ-YLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGD-RQISLDYALF 708
            IGVC G+LG+NLP+  DV+ LY    I  MR+Y+P  +VL AL G+ I VL+ +    L  +AS+ + A  WV+ N+ +F   V F+YIAV NE    D+  Q  ++PAMRN+Q A+  A  GS IKVST++ F     +SPPS G         L P++ FL     PLL N+YPYFA  G+ R I L +A F
Sbjct:   26 IGVCNGVLGNNLPAPSDVVTLYRSKRIDAMRIYEPESKVLTALSGTGIAVLMDV-GPALPSLASSPSAAAAWVKANVSSF-PGVSFRYIAVRNEVM--DSAGQSTILPAMRNVQRALAAA--GSPIKVSTSVRFDVFNNTSPPSNGVLADK-SGFLRPILNFLARPARPLLANVYPYFAYKGNPRDIQLTFATF 212          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13I_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform PR-N (Fragment) OS=Nicotiana tabacum GN=PRN PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.974e-31
Identity = 74/157 (47.13%), Postives = 100/157 (63.69%), Query Frame = 1
Query:  247 VLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKPGDN--FAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFA-IDGDRQISLDYALF 708
            V  ALRGSNIE++L +P   LQ + ++ + AN WVQDNI N   +VKFKYIAVGN+  PG+N  +A ++ PAM+N+ NA+  A L  QIKVSTA   G L  + PP    F+  +   ++P+I FL ++  PLL N+YPYF  I     + L YALF
Sbjct:    2 VFNALRGSNIEIILDVPLQDLQSL-TDPSRANGWVQDNIINHFPDVKFKYIAVGNKVSPGNNGQYAPFVAPAMQNVYNALAAAGLQDQIKVSTATYSGILANTYPPKDSIFRGEFNSFINPIIQFLVQHNLPLLANVYPYFGHIFNTADVPLSYALF 157          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E1314_ARATH (Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana GN=At2g27500/F10A12.18 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.671e-30
Identity = 68/196 (34.69%), Postives = 116/196 (59.18%), Query Frame = 1
Query:  133 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEA-KPGDN-FAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAI-DGDRQISLDYALFR 711
            +G+ YG + +NLPS   V  L    NI R++LYD +  VL +   S ++ ++GL N+ LQ ++++  +A  W+Q  ++  ++  +   I VGNE  K  D+   Q L+PAM+++  A+    L  Q+ V++A     L  S PPS+GSFK+ +   L P++ F ++ +SP L+N YP+FA  D  +++ L+Y LF+
Sbjct:   29 VGINYGQIANNLPSPARVAVLLRSLNITRVKLYDADPNVLFSFSNSQVDFMIGLGNEYLQNMSTDPTKAQDWLQQRLEPHISKTRITSIVVGNEIFKTNDHVLIQSLLPAMKSVYAALTNLGLEKQVTVTSAHSLDILSTSYPPSSGSFKEEFIQYLQPLLDFHSQIESPFLINAYPFFAYKDSPKEVPLEYVLFQ 224          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.850e-30
Identity = 70/195 (35.90%), Postives = 108/195 (55.38%), Query Frame = 1
Query:  133 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKPGD--NFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGD-RQISLDYALF 708
            IGV YG + DNLP   + + L    +I+++RLY  +  +++AL G+ + +++G  N  +  +AS+   A  W+  N+  F    K   I VGNE    +  N    L+PAM+N+Q A+   +LG +IKVST      L  S PPS+GSF   Y+  L  ++ FL++  SP  +N YP+FA   D R  +L + LF
Sbjct:   26 IGVNYGQVADNLPPPSETVKLLQSTSIQKVRLYGADPAIIKALAGTGVGIVIGAANGDVPSLASDPNAATQWINSNVLPFYPASKIMLITVGNEILMSNDPNLVNQLLPAMQNVQKALEAVSLGGKIKVSTVNSMTVLGSSDPPSSGSFAAGYQTGLKGILQFLSDTGSPFAINPYPFFAYQSDPRPETLAFCLF 220          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.083e-29
Identity = 77/195 (39.49%), Postives = 110/195 (56.41%), Query Frame = 1
Query:  133 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKPG-DNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYF-AIDGDRQISLDYALFR 711
            IGV  G    N+PS   V+AL    NI R+RLYD ++ +L A   + ++V++ +PND+L  I+ + A A  WV  N+  +        IAVG+E      N A  LV A++ IQ A+  ANL  QIKVST      +  S PPS   F + + P++ P++ FL    SPLL+N+YPYF  +  +  I LDYALF+
Sbjct:   23 IGVNIGTEVTNMPSPTQVVALLKSQNINRVRLYDADRSMLLAFAHTGVQVIISVPNDQLLGISQSNATAANWVTRNVAAYYPATNITTIAVGSEVLTSLTNAASVLVSALKYIQAALVTANLDRQIKVSTPHSSTIILDSFPPSQAFFNKTWDPVIVPLLKFLQSTGSPLLLNVYPYFDYVQSNGVIPLDYALFQ 217          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E1310_ARATH (Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis thaliana GN=At5g42100 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.550e-28
Identity = 72/198 (36.36%), Postives = 112/198 (56.57%), Query Frame = 1
Query:  127 AQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKPGDNFA--QYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAI-DGDRQISLDYALFR 711
            + IG+ YG + +NLP   +VI L       +++LYD + + L A  GS  E+ + L N+ L  + S+  +A  WV++N+Q ++ N K   I VGNE    +  A    L PAM++I  A+    L  QI V+TA     L+VS PPSA SF++     L P++ F  +  SP+L+N YP+FA  +  + +SLD+ LF+
Sbjct:   25 SSIGINYGQVANNLPPPKNVIPLLKSVGATKVKLYDADPQALRAFAGSGFELTVALGNEYLAQM-SDPIKAQGWVKENVQAYLPNTKIVAIVVGNEVLTSNQSALTAALFPAMQSIHGALVDCGLNKQIFVTTAHSLAILDVSYPPSATSFRRDLLGSLTPILDFHVKTGSPILINAYPFFAYEENPKHVSLDFVLFQ 221          
The following BLAST results are available for this feature:
BLAST of FC930711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
E13B_MAIZE6.555e-3543.52Glucan endo-1,3-beta-glucosidase, acidic isoform O... [more]
E1312_ARATH6.555e-3539.09Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis... [more]
E13D_HORVU2.754e-3340.51Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vu... [more]
E1311_ARATH3.977e-3237.31Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis... [more]
E13C_HORVU5.194e-3243.81Glucan endo-1,3-beta-glucosidase GIII OS=Hordeum v... [more]
E13I_TOBAC1.974e-3147.13Glucan endo-1,3-beta-glucosidase, acidic isoform P... [more]
E1314_ARATH1.671e-3034.69Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis... [more]
E137_ARATH2.850e-3035.90Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]
E133_ARATH1.083e-2939.49Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]
E1310_ARATH4.550e-2836.36Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC34010E02EF PostHarvC1 Citrus clementina cDNA clone C34010E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930711 ID=FC930711; Name=FC930711; organism=Citrus clementina; type=EST; length=711bp
GATCCCACTTTTCCATTTGCATTTTTCTCCCTGGCTAAATTCTTATCCTC
CCTCAATACCCCTCCAATGGTTTCCGTCGTCTTGCTACTTCTTGGCCTGC
TAGTGGCTACTCTAGACACTACAAGTGCTCAAATAGGTGTTTGTTATGGA
ATGCTTGGTGACAACTTACCATCAAAACCAGATGTCATAGCTCTCTACAA
CCAAAACAACATCAGAAGAATGAGACTCTATGATCCAAACAAAGAAGTTC
TAGAAGCTCTCCGTGGCTCCAACATTGAAGTTTTGCTAGGCCTTCCCAAC
GATAAGCTCCAGATAATCGCTTCCAATCAAGCCGAAGCGAACACTTGGGT
CCAAGACAACATCCAAAATTTTGTTAACAATGTCAAGTTCAAATACATCG
CTGTAGGAAATGAAGCAAAACCAGGAGACAACTTCGCTCAGTATCTTGTT
CCCGCCATGAGAAACATACAAAATGCCATTAACGGAGCTAACCTTGGAAG
CCAAATCAAAGTTTCCACTGCCATTGAATTCGGAGCTCTTGAAGTATCCT
CTCCGCCGTCAGCAGGCTCCTTTAAGCAAGCTTACAGACCAATTCTTGAT
CCCGTCATTACCTTCCTCAACGAAAACAAATCCCCGTTGCTTGTTAACTT
GTACCCTTACTTCGCAATTGATGGCGACCGTCAAATATCTCTTGATTATG
CACTGTTTCGG
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