FC930711

Overview
NameFC930711
Unique NameFC930711
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig197 contig Ccv1_Contig197:342..1052. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E136_ARATH (Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis thaliana GN=At5g58090 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.852e-27
Identity = 70/202 (34.65%), Postives = 113/202 (55.94%), Query Frame = 1
Query:  124 SAQIGVCYGMLGDNLPSKPDVIA-LYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFV--NNVKFKYIAVGNEAKPGDNFAQYL---VPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSP-PSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGDRQISLDYALF 708
            ++ IG  +G    + P  PD++  +  +N I++++L+D   + L AL  S IEV++G+PN+ L  +AS+   A  WV  N+   +  +NV  +Y+AVGNE         YL    PA+RNIQ AI  A L +Q+KV+  +     + S+  PS G F+   R ++  ++ FL+EN  P  VN+YPY ++  +    +DYA F
Sbjct:   19 ASSIGANWGTQASH-PLPPDIVVRMLRENGIQKVKLFDAEYDTLRALGKSGIEVMVGIPNEMLATLASSLKAAEKWVAKNVSTHISTDNVNIRYVAVGNEPFLSTYNGSYLSTTFPALRNIQIAIIKAGLQNQVKVTCPLNADVYDSSTTFPSGGDFRANIRDLMITIVKFLSENGGPFTVNIYPYISLYTNPDFPVDYAFF 219          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E138_ARATH (Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.261e-26
Identity = 64/200 (32.00%), Postives = 112/200 (56.00%), Query Frame = 1
Query:  133 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNI--QNFVNNVKFKYIAVGNE---AKPGDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALE--VSSP-PSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGDRQISLDYALF 708
            +GV +G +  +      V+ +   NNI +++L+D ++  + AL GS +EV++ +PND+L+++ S    A  WV+ N+   NF   V   ++AVGNE        +F     PA+ NIQNA+N A LG+ +K +  +     +   S+P PSAG F+      +  ++ FL +N +P+ +N+YP+ ++ G+    L+YA F
Sbjct:   25 LGVNWGTMATHKLPPKTVVQMLKDNNINKVKLFDADETTMGALAGSGLEVMVAIPNDQLKVMTSYD-RAKDWVRKNVTRYNFDGGVNITFVAVGNEPFLKSYNGSFINLTFPALANIQNALNEAGLGNSVKATVPLNADVYDSPASNPVPSAGRFRPDIIGQMTQIVDFLGKNNAPITINIYPFLSLYGNDDFPLNYAFF 223          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13B_SOYBN (Glucan endo-1,3-beta-glucosidase (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.259e-26
Identity = 65/145 (44.83%), Postives = 86/145 (59.31%), Query Frame = 1
Query:  274 IEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGDRQISLDYALF 708
            IE+++ +  + LQ +  + A A  WV   +  +  +V FKYIAVGNE  P  N AQY++ AM NIQNAI+       IKVSTAI+   +  S PP+ G F     P + P+I FL  N +PLL N+YPYFA   D+ I L YALF
Sbjct:    3 IELIMDVAKETLQSLTDSNA-ATDWVNKYVTPYSQDVNFKYIAVGNEIHPNTNVAQYILSAMTNIQNAISSRKF--TIKVSTAIDSTLITNSYPPNDGVFTSDAEPYIKPIINFLVSNGAPLLANVYPYFAYANDQSIPLAYALF 144          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E139_ARATH (Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis thaliana GN=At5g58480 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.239e-25
Identity = 65/205 (31.71%), Postives = 114/205 (55.61%), Query Frame = 1
Query:  118 TTSAQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFV---NNVKFKYIAVGNE---AKPGDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGA-LEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGDRQISLDYALFR 711
            TT   +G+ +G    +      V+ L   N I +++L+D + +VL AL GSNI V +G+ N  L+ + ++   A +WV DN+  +    N V+ +Y+AVG E      G+ +  +++ A  NIQNA+  ANL +++KV     F + L  S  PS+G F+      +  +++FL ++ SP  V + P+ +   ++ ISLD++LF+
Sbjct:   21 TTVRAVGINWGTEASHPLPPSKVVELLKSNGIVKVKLFDADPKVLRALSGSNIGVTIGIQNSMLKSLNASVKVAESWVHDNVTRYFNGGNRVRIEYVAVGEEPFLQSYGNQYKPFVIGAAMNIQNALVKANLANEVKVVVPSSFDSFLSESGRPSSGHFRADLNKTMIELLSFLTKHHSPFFVTISPFLSFHQNKNISLDFSLFK 225          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E135_ARATH (Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.114e-25
Identity = 63/198 (31.82%), Postives = 112/198 (56.57%), Query Frame = 1
Query:  133 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFV--NNVKFKYIAVGNE---AKPGDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALE-VSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGDRQISLDYALF 708
            IGV +G    +      V+ L  +N I++++L++ +  +L+AL  + I+V++G+PND L  +A + A A  WV  N+   V  N V  +Y+AVGNE         F    +PA++NIQ+AI  A L +Q+KV+  +     +  S+ PS G F+   R ++  ++ FL++N +P  +N+YP+ ++  D    +++A F
Sbjct:   27 IGVNWGSQARHPLPPATVVRLLRENGIQKVKLFEADSAILKALSRTGIQVMVGIPNDLLAPLAGSVAAAERWVSQNVSAHVSSNGVDIRYVAVGNEPFLKAFNGTFEGITLPALQNIQSAIIKAGLATQVKVTVPLNADVYQSASNLPSDGDFRPEIRDLMLNIVKFLSDNGAPFTINIYPFISLYNDPNFPVEFAFF 224          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: EA6_ARATH (Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 68/200 (34.00%), Postives = 110/200 (55.00%), Query Frame = 1
Query:  124 SAQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNE--AKPGDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYR-PILDPVITFLNENKSPLLVNLYPYFAID-GDRQISLDYALFR 711
            +++IG+ YG  G+NLPS    I          ++LYD + E L  L  +N+ V + +PN ++  ++SNQ  A+ WV+ NI  +    + +++ VGNE  +    N +  LVPAMR I N++    +   IKV T +   +L  S PPS G+F++    P++ P++ FLN   S   +N++PYF         SLD+ALF+
Sbjct:   39 ASKIGINYGRRGNNLPSPYQSINFIKSIKAGHVKLYDADPESLTLLSQTNLYVTITVPNHQITALSSNQTIADEWVRTNILPYYPQTQIRFVLVGNEILSYNSGNVSVNLVPAMRKIVNSLRLHGI-HNIKVGTPLAMDSLRSSFPPSNGTFREEITGPVMLPLLKFLNGTNSYFFLNVHPYFRWSRNPMNTSLDFALFQ 237          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.584e-23
Identity = 66/195 (33.85%), Postives = 104/195 (53.33%), Query Frame = 1
Query:  133 IGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKPG-DNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYF-AIDGDRQISLDYALFR 711
            IGV  G    ++P    V+AL     IR +RLY+ +  +L AL  + I+V++ +PND+L  I  + + A  WV+ N+           ++VG+E      N A  LV A++N+  A+  ANL   IKVST +    +    PPS   F ++   ++ P+++FL    S L+VN+YPY   +  +  I LDYALF+
Sbjct:   32 IGVNIGTDLSDMPHPTQVVALLKAQEIRHIRLYNADPGLLIALANTGIKVIISIPNDQLLGIGQSNSTAANWVKRNVIAHYPATMITAVSVGSEVLTSLSNAAPVLVSAIKNVHAALLSANLDKLIKVSTPLSTSLILDPFPPSQAFFNRSLNAVIVPLLSFLQSTNSYLMVNVYPYIDYMQSNGVIPLDYALFK 226          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E134_ARATH (Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 61/200 (30.50%), Postives = 102/200 (51.00%), Query Frame = 1
Query:  118 TTSAQIGVCYGMLGDNLPSKPDVIALYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQAEANTWVQDNIQNFVNNVKFKYIAVGNEAKPG-DNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSPPSAGSFKQAYRPILDPVITFLNENKSPLLVNLYPYFAIDGDRQI-SLDYALFR 711
            + +A IGV  G    N+P   D++ L     I  +RLYD N  +L+A   ++IEV++G+ N+++  I    + A  WV  N+  ++ +     IAVG+E      + A  L  A+ NI  A+  +NL  ++KVS+ +    +    PPS  +F  ++   +  ++ FL    S  ++N YPY+       I  LDYALF+
Sbjct:   21 SNAAFIGVNIGTDLTNMPPPSDIVTLLKSQQITHVRLYDANSHMLKAFANTSIEVMVGVTNEEILKIGRFPSAAAAWVNKNVAAYIPSTNITAIAVGSEVLTTIPHVAPILASALNNIHKALVASNLNFKVKVSSPMSMDIMPKPFPPSTSTFSPSWNTTVYQLLQFLKNTGSFFMLNAYPYYGYTTANGIFPLDYALFK 220          
BLAST of FC930711 vs. ExPASy Swiss-Prot
Match: E13B_WHEAT (Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.733e-19
Identity = 70/206 (33.98%), Postives = 100/206 (48.54%), Query Frame = 1
Query:  118 TTSAQIGVCYGMLGDNLPSKPDVIA-LYNQNNIRRMRLYDPNKEVLEALRGSNIEVLLGLPNDKLQIIASNQA---EANTWVQDNIQNFVNNVKFKYIAVGNE--AKPGDNFAQYLVPAMRNIQNAINGANLGSQIKVSTAIEFGALEVSSP-PSAGSFKQAYRPILDP-VITFLNENKSPLLVNLYPYFAIDGDRQISLDYALFR 711
            T S  IGV YG   DNLPS   V   L  +  I R++L+D N   + A  G+ I + + LPN  L  +A        A +W++ N+  +V       +  GNE       N    L+PAMR +  A+    L + ++V+T    G L  S   PS  SF+  Y   L P ++ F  +  SP +VN YPYF+    R  +L+YALFR
Sbjct:   21 TPSLHIGVNYGANADNLPSPTSVATFLATKTTIDRVKLFDANPTFISAFAGTPISLAVSLPNSALPALADKATGLDAARSWIRANLSPYVPATNVTLLLAGNEILLSTDTNLILSLLPAMRRLAQALKAEGL-TGVRVTTPHYLGILAPSDGIPSNASFRAGYNTKLFPAMLQFHRDTGSPFMVNPYPYFSY---RPETLNYALFR 222          
The following BLAST results are available for this feature:
BLAST of FC930711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
E136_ARATH3.852e-2734.65Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis ... [more]
E138_ARATH3.261e-2632.00Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis ... [more]
E13B_SOYBN4.259e-2644.83Glucan endo-1,3-beta-glucosidase (Fragment) OS=Gly... [more]
E139_ARATH1.239e-2531.71Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis ... [more]
E135_ARATH2.114e-2531.82Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis ... [more]
EA6_ARATH1.789e-2434.00Probable glucan endo-1,3-beta-glucosidase A6 OS=Ar... [more]
E132_ARATH2.584e-2333.85Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]
E134_ARATH4.873e-2230.50Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis ... [more]
E13B_WHEAT1.733e-1933.98Glucan endo-1,3-beta-glucosidase OS=Triticum aesti... [more]

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Properties
Property NameValue
Genbank descriptionC34010E02EF PostHarvC1 Citrus clementina cDNA clone C34010E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930711 ID=FC930711; Name=FC930711; organism=Citrus clementina; type=EST; length=711bp
GATCCCACTTTTCCATTTGCATTTTTCTCCCTGGCTAAATTCTTATCCTC
CCTCAATACCCCTCCAATGGTTTCCGTCGTCTTGCTACTTCTTGGCCTGC
TAGTGGCTACTCTAGACACTACAAGTGCTCAAATAGGTGTTTGTTATGGA
ATGCTTGGTGACAACTTACCATCAAAACCAGATGTCATAGCTCTCTACAA
CCAAAACAACATCAGAAGAATGAGACTCTATGATCCAAACAAAGAAGTTC
TAGAAGCTCTCCGTGGCTCCAACATTGAAGTTTTGCTAGGCCTTCCCAAC
GATAAGCTCCAGATAATCGCTTCCAATCAAGCCGAAGCGAACACTTGGGT
CCAAGACAACATCCAAAATTTTGTTAACAATGTCAAGTTCAAATACATCG
CTGTAGGAAATGAAGCAAAACCAGGAGACAACTTCGCTCAGTATCTTGTT
CCCGCCATGAGAAACATACAAAATGCCATTAACGGAGCTAACCTTGGAAG
CCAAATCAAAGTTTCCACTGCCATTGAATTCGGAGCTCTTGAAGTATCCT
CTCCGCCGTCAGCAGGCTCCTTTAAGCAAGCTTACAGACCAATTCTTGAT
CCCGTCATTACCTTCCTCAACGAAAACAAATCCCCGTTGCTTGTTAACTT
GTACCCTTACTTCGCAATTGATGGCGACCGTCAAATATCTCTTGATTATG
CACTGTTTCGG
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