FC930714

Overview
NameFC930714
Unique NameFC930714
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930714 vs. ExPASy Swiss-Prot
Match: ERVB_TABDI (Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.415e-24
Identity = 55/82 (67.07%), Postives = 63/82 (76.83%), Query Frame = 3
Query:  480 LPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDKWSI 725
            LP  VDWR KGAV  +K+Q  CGSCWAFS +AAVE INKI TG LISLSEQELVDCDT+ + GCNGG M+ AF++II    I
Sbjct:    1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTA-SHGCNGGWMNNAFQYIITNGGI 81          
BLAST of FC930714 vs. ExPASy Swiss-Prot
Match: CATV_NPVBS (Viral cathepsin OS=Buzura suppressaria nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.848e-24
Identity = 62/165 (37.58%), Postives = 93/165 (56.36%), Query Frame = 3
Query:  216 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFII 710
            FE +L  + K YN   EKE+RF IF++ L  I+  N  N +    +N+FADL+  E  S + G     + T+          P  G   P + DWR++  V  +K+Q +CG+CWAF+T+A++E    I     I LSEQ+++DCD   + GC+GGL+  AFE +I
Sbjct:   31 FETFLANYNKMYNDTSEKERRFSIFQQTLEEINYKNRLNDSAVYQINKFADLSKNEIISKYTGLNMPVQTTNFCKTIVIDQPPGKG---PLNFDWRQQNKVTSIKNQKACGACWAFATLASIESQYAIKNNVHIDLSEQQMIDCD-YVDMGCDGGLLHTAFEQMI 191          
BLAST of FC930714 vs. ExPASy Swiss-Prot
Match: CATF_HUMAN (Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.848e-24
Identity = 64/170 (37.65%), Postives = 99/170 (58.24%), Query Frame = 3
Query:  201 EVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR-TYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFI 707
            ++ ++F+ +++ + + Y +  E   R  +F  N+    +  + +R T + G+ +F+DLT EE+R+++L      K    K K++      VG+  P   DWR KGAV +VKDQG CGSCWAFS    VEG   +  G+L+SLSEQEL+DCD   ++ C GGL   A+  I
Sbjct:  182 KMASIFKNFVITYNRTYESKEEARWRLSVFVNNMVRAQKIQALDRGTAQYGVTKFSDLTEEEFRTIYLNTLL-RKEPGNKMKQAKS----VGDLAPPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCD-KMDKACMGGLPSNAYSAI 345          
BLAST of FC930714 vs. ExPASy Swiss-Prot
Match: TEST2_RAT (Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.413e-24
Identity = 69/188 (36.70%), Postives = 99/188 (52.66%), Query Frame = 3
Query:  168 ESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE----NRTYKVGLNRFADLTNEEYRSMHLG-ARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDC-DTSYNEGCNGGLMDYAFEFIID 713
            E  S++   D  +   +  W  KHGK YN   E+ KR  ++++N + I+ HN E       + + +N F DLTN E+  M  G  R   K+T +       Y+P+        VDWR+ G V  VK+QG C S WAFS   ++EG     T  LI LSEQ L+DC  ++   GC+GG M YAF+++ D
Sbjct:   13 EVDSTAPTPDPSLDVEWNEWRTKHGKTYNMNEERLKR-AVWEKNFKMIELHNWEYLEGRHDFTMAMNAFGDLTNIEFVKMMTGFQRQKIKKTHIFQDHQFLYVPK-------RVDWRQLGYVTPVKNQGHCASSWAFSATGSLEGQMFRKTERLIPLSEQNLLDCMGSNVTHGCSGGFMQYAFQYVKD 192          
BLAST of FC930714 vs. ExPASy Swiss-Prot
Match: CATV_NPVCF (Viral cathepsin OS=Choristoneura fumiferana nuclear polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.413e-24
Identity = 66/174 (37.93%), Postives = 98/174 (56.32%), Query Frame = 3
Query:  216 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNR----YLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDKWSI 725
            FE +L K  K+Y++  EK +RF+IF+ NL  I   N  + T +  +N+FADL+ +E  S + G        SL  +  N      L R  +  P   DWR+   V  VK+QG CG+CWAF+T+ ++E    I     I+LSEQ+L+DCD   + GC+GGL+  AFE +++   I
Sbjct:   28 FEDFLHKFNKSYSSESEKLRRFQIFRHNLEEIINKNHNDSTAQYEINKFADLSKDETISKYTGL-------SLPLQTQNFCEVVVLDRPPDKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHNQFINLSEQQLIDCD-FVDAGCDGGLLHTAFEAVMNMGGI 193          
BLAST of FC930714 vs. ExPASy Swiss-Prot
Match: CATV_GVCP (Viral cathepsin OS=Cydia pomonella granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.375e-24
Identity = 61/175 (34.86%), Postives = 95/175 (54.29%), Query Frame = 3
Query:  213 MFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEA----LPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIDKWSI 725
            +F+ + +K+ K Y +  E+  + E FK NL+ I+E N  ++     +N ++DL          G R G K+       +   +  + +     LP+++DWR K  V  VK+Q  CGSCWAFSTIA +E +  I     ++LSEQ LV+CD + N GC GGLM +A E I+ +  +
Sbjct:   31 LFKNFAIKYNKTYVSDEERAIKLENFKNNLKMINEKNMASKYAVFDINEYSDLNKNALLRRTTGFRLGLKKNPSAFTMTECSVVVIKDEPQALLPETLDWRDKHGVTPVKNQMECGSCWAFSTIANIESLYNIKYDKALNLSEQHLVNCD-NINNGCAGGLMHWALESILQEGGV 204          
BLAST of FC930714 vs. ExPASy Swiss-Prot
Match: CATV_NPVHC (Viral cathepsin OS=Hyphantria cunea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.021e-24
Identity = 63/165 (38.18%), Postives = 94/165 (56.97%), Query Frame = 3
Query:  216 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFII 710
            FE +L K  K Y++  EK +RF+IF+ NL  I   N  + T +  +N+F+DL+ +E  S + G     +  +          P  G   P   DWR+   V  VK+QG CG+CWAF+T+A++E    I    LI+LSEQ+L+DCD   + GCNGGL+  A+E ++
Sbjct:   28 FEDFLHKFNKHYSSESEKLRRFQIFQHNLEEIIIKNQNDTTAQYEINKFSDLSKDETISKYTGLALPLQTQNFCEVVVLNRPPDKG---PLEFDWRRLNKVTSVKNQGICGACWAFATLASLESQFAIKHNQLINLSEQQLIDCD-YVDAGCNGGLLHTAYEAVM 188          
BLAST of FC930714 vs. ExPASy Swiss-Prot
Match: CATL_BRUPA (Cathepsin L-like OS=Brugia pahangi PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.021e-24
Identity = 70/179 (39.11%), Postives = 100/179 (55.87%), Query Frame = 3
Query:  189 RTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR----TYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKR--SNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEF 704
            R  +++   ++ ++   GK Y+   E   R  IF+ N    +  N +      +Y   LN  ADLT+EE+   + G R    +T L+ KR  S  Y     E LPD VDWR KGAV  V++QG CGSC+AF+T AA+E  +K +TG L+ LS Q +VDC  +  N GC+GG M  AF++
Sbjct:   82 RAMEKLETEWKDYVTALGKHYDQK-ENNFRMAIFESNELMTERINKKYEQGLVSYTTALNDLADLTDEEFMVRN-GLRL-PNQTDLRGKRQTSEFYRYDKSERLPDQVDWRTKGAVTPVRNQGECGSCYAFATAAALEAYHKQMTGRLLDLSPQNIVDCTRNLGNNGCSGGYMPTAFQY 257          
BLAST of FC930714 vs. ExPASy Swiss-Prot
Match: CATJ_MOUSE (Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.021e-24
Identity = 64/177 (36.16%), Postives = 96/177 (54.24%), Query Frame = 3
Query:  195 DDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSEN----RTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCD-TSYNEGCNGGLMDYAFEFII 710
            D ++ A ++ W  K+ K+Y+   E  +R  +++EN+R I  HN EN      + + +N+F D T+EE+R         A  T   ++        V   LPD  DWR++G V  V++QG CGSCWAF+   A+EG     TG+L  LS Q L+DC  T  N+GC  G    AFE+++
Sbjct:   22 DPKLDAEWKDWKTKYAKSYSPKEEALRR-AVWEENMRMIKLHNKENSLGKNNFTMKMNKFGDQTSEEFRKSIDNIPIPAAMTDPHAQN------HVSIGLPDYKDWREEGYVTPVRNQGKCGSCWAFAAAGAIEGQMFWKTGNLTPLSVQNLLDCSKTVGNKGCQSGTAHQAFEYVL 191          
BLAST of FC930714 vs. ExPASy Swiss-Prot
Match: CATV_NPVLD (Viral cathepsin OS=Lymantria dispar multicapsid nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.169e-24
Identity = 65/170 (38.24%), Postives = 96/170 (56.47%), Query Frame = 3
Query:  216 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE-----NRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFII 710
            FE+++  + K Y +  EK KR+ IFK+NL  I+  N         TYK+  N+F+DL+  E  +   G     + ++          P  G   P   DWR++  V  +K+QG+CG+CWAF+T+A+VE    +    LI LSEQ+L+DCD S + GCNGGL+  AFE I+
Sbjct:   56 FESFVENYNKNYTSDWEKNKRYSIFKDNLHEINAKNGNATDGPTATYKI--NKFSDLSKSELIAKFTGLSIPERVSNFCKTIILNQPPDKG---PLHFDWREQNKVTSIKNQGACGACWAFATLASVESQFAMRHNRLIDLSEQQLIDCD-SVDMGCNGGLLHTAFEEIM 219          
The following BLAST results are available for this feature:
BLAST of FC930714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
ERVB_TABDI1.415e-2467.07Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=... [more]
CATV_NPVBS1.848e-2437.58Viral cathepsin OS=Buzura suppressaria nuclear pol... [more]
CATF_HUMAN1.848e-2437.65Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1[more]
TEST2_RAT2.413e-2436.70Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2[more]
CATV_NPVCF2.413e-2437.93Viral cathepsin OS=Choristoneura fumiferana nuclea... [more]
CATV_GVCP5.375e-2434.86Viral cathepsin OS=Cydia pomonella granulosis viru... [more]
CATV_NPVHC7.021e-2438.18Viral cathepsin OS=Hyphantria cunea nuclear polyhe... [more]
CATL_BRUPA7.021e-2439.11Cathepsin L-like OS=Brugia pahangi PE=1 SV=1[more]
CATJ_MOUSE7.021e-2436.16Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2[more]
CATV_NPVLD9.169e-2438.24Viral cathepsin OS=Lymantria dispar multicapsid nu... [more]

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Properties
Property NameValue
Genbank descriptionC34010E05EF PostHarvC1 Citrus clementina cDNA clone C34010E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930714 ID=FC930714; Name=FC930714; organism=Citrus clementina; type=EST; length=726bp
GACTCTGCCTCATCAATCCATCTTCTTCTCCCAAAAAGAAAAAAAAAAAG
TTCTTTTCTCAAAAGATGGGTTTGTTTAGATCACCAACCATGGCCATGTT
TTTACTTTTTCTCTTCACTGTTTCATCTGCCTTGGACATGTCGATTGTAT
CTTATGATAAAACCCATGAGTCAAAATCTAGCAGCTGGAGGACCGACGAT
GAGGTTATGGCTATGTTCGAGGCCTGGCTCGTGAAGCATGGCAAGGCTTA
TAACGCTTTGGGTGAAAAAGAGAAGAGGTTTGAGATCTTTAAGGAAAATC
TTAGGTTTATTGATGAACATAACTCAGAGAACCGGACCTACAAGGTTGGG
TTGAACCGGTTTGCTGATTTGACCAACGAGGAGTACCGGTCCATGCATCT
GGGTGCACGCTTTGGTGCTAAAAGGACTTCCTTGAAATCAAAGAGGAGCA
ACCGTTATCTGCCACGTGTCGGCGAGGCGTTGCCGGACTCTGTTGATTGG
AGGAAGAAAGGAGCTGTCGCTGAAGTTAAAGATCAAGGAAGCTGTGGGAG
TTGCTGGGCATTTTCAACCATTGCAGCTGTAGAGGGTATAAACAAGATTG
TTACAGGTAGCCTGATCTCACTATCCGAGCAGGAGTTGGTGGATTGTGAT
ACATCATATAATGAAGGATGTAATGGTGGTTTGATGGACTATGCATTCGA
GTTCATTATTGATAAATGGAGTATTG
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