FC930717

Overview
NameFC930717
Unique NameFC930717
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930717 vs. ExPASy Swiss-Prot
Match: Y1385_MYCBO (Uncharacterized oxidoreductase Mb1385 OS=Mycobacterium bovis GN=fabG2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.767e-12
Identity = 52/170 (30.59%), Postives = 84/170 (49.41%), Query Frame = 3 
Query:  210 QLFHKNGAKVVIADVQDNLGQALADKLGNQDVCY-IHCDVSNEREVINLVDTTVAKFGKLDILVNTGCNLEYRGFVSILDTPKSDLEHLLAVNTIGGFLVAKHAARVMVPRRRGCILYTTGTGTTACAEIEGFCNIPANYYGVSKFGILGLVKGLAAELGRYGIRVDCVS 716
            Q F   GA+VV+ DV     +  A +LG  DV   + CDV+   +V  L+ T V +FG LD++VN   N       ++    +   + ++AV+  G +   + AA +M  R+RG I+    +  +    + G  N     Y  +K GI+G+ K  A EL   GIRV+ ++
Sbjct:   25 QRFVAEGARVVLGDVNLEATEVAAKRLGGDDVALAVRCDVTQADDVDILIRTAVERFGGLDVMVN---NAGITRDATMRTMTEEQFDQVIAVHLKGTWNGTRLAAAIMRERKRGAIV--NMSSVSGKVGMVGQTN-----YSAAKAGIVGMTKAAAKELAHLGIRVNAIA 184
[Close]
BLAST of FC930717 vs. ExPASy Swiss-Prot
Match: Y1350_MYCTU (Uncharacterized oxidoreductase Rv1350/MT1393 OS=Mycobacterium tuberculosis GN=fabG2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.767e-12
Identity = 52/170 (30.59%), Postives = 84/170 (49.41%), Query Frame = 3 
Query:  210 QLFHKNGAKVVIADVQDNLGQALADKLGNQDVCY-IHCDVSNEREVINLVDTTVAKFGKLDILVNTGCNLEYRGFVSILDTPKSDLEHLLAVNTIGGFLVAKHAARVMVPRRRGCILYTTGTGTTACAEIEGFCNIPANYYGVSKFGILGLVKGLAAELGRYGIRVDCVS 716
            Q F   GA+VV+ DV     +  A +LG  DV   + CDV+   +V  L+ T V +FG LD++VN   N       ++    +   + ++AV+  G +   + AA +M  R+RG I+    +  +    + G  N     Y  +K GI+G+ K  A EL   GIRV+ ++
Sbjct:   25 QRFVAEGARVVLGDVNLEATEVAAKRLGGDDVALAVRCDVTQADDVDILIRTAVERFGGLDVMVN---NAGITRDATMRTMTEEQFDQVIAVHLKGTWNGTRLAAAIMRERKRGAIV--NMSSVSGKVGMVGQTN-----YSAAKAGIVGMTKAAAKELAHLGIRVNAIA 184
The following BLAST results are available for this feature:
BLAST of FC930717 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
Y1385_MYCBO2.767e-1230.59Uncharacterized oxidoreductase Mb1385 OS=Mycobacte... [more]
Y1350_MYCTU2.767e-1230.59Uncharacterized oxidoreductase Rv1350/MT1393 OS=My... [more]

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Properties
Property NameValue
Genbank descriptionC34010E08EF PostHarvC1 Citrus clementina cDNA clone C34010E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930717 ID=FC930717; Name=FC930717; organism=Citrus clementina; type=EST; length=727bp
GACACTGCCAAGAGAAGGAAATAATCACAAGCCAAACCTTGTATTTTAAC
AATCTTGATTGAGTTTCAGGTTTTTGAGGAAATTTTTTCACACAGGCTTG
TAGTACTACTGCAGCAGCACCCTGCGAAAGGTGTCAACTCAGCATTCGGT
TACAAGGCAGAGTGGCAATCATTACTGGCGGAGCAAGCGGGATCGGAGCA
TCTGCGGCTCAGCTTTTCCACAAAAATGGAGCCAAAGTTGTCATAGCCGA
TGTGCAAGATAATCTTGGCCAAGCCCTAGCCGATAAGCTAGGCAACCAGG
ATGTCTGCTACATCCATTGTGATGTATCAAATGAAAGGGAAGTCATCAAT
CTTGTTGATACCACCGTTGCTAAATTCGGAAAGCTCGACATCCTGGTCAA
TACCGGATGCAATCTTGAGTATCGTGGTTTCGTGAGCATTTTGGACACCC
CAAAGTCTGATCTAGAACATTTACTGGCTGTGAACACAATTGGTGGTTTC
TTAGTAGCCAAGCATGCTGCAAGAGTCATGGTGCCACGCCGCAGAGGTTG
CATATTGTATACAACGGGTACGGGCACTACTGCTTGTGCGGAAATTGAAG
GTTTCTGCAATATTCCAGCTAATTATTATGGAGTGTCAAAATTTGGTATC
TTGGGACTTGTCAAGGGCTTAGCGGCAGAGCTTGGACGGTATGGAATAAG
AGTAGATTGCGTATCGCATACTTATGG
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