FC930718

Overview
NameFC930718
Unique NameFC930718
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length753
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930718 vs. ExPASy Swiss-Prot
Match: 3HIDH_HUMAN (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Homo sapiens GN=HIBADH PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.062e-21
Identity = 60/198 (30.30%), Postives = 98/198 (49.49%), Query Frame = 1
Query:  115 KMEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVYMIMGCMMNTFSEGLVLAEKSGLD 708
            K  VGF+GLG MG  ++ NL+++G+ + +++     C E    G  V  SPA+V +K    I ML     A+       G+L+++  G   ID ST+D   S ++++ +   G  F++APVSG    A +G L  +  G +  +  A   L  +G    + G VG G   K+   M++   M   +E + L  + GLD
Sbjct:   39 KTPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLD 236          
BLAST of FC930718 vs. ExPASy Swiss-Prot
Match: 3HIDH_BOVIN (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Bos taurus GN=HIBADH PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.595e-21
Identity = 58/198 (29.29%), Postives = 99/198 (50.00%), Query Frame = 1
Query:  115 KMEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVYMIMGCMMNTFSEGLVLAEKSGLD 708
            K  VGF+G+G MG  ++ NL+++G+ + +++     C E +  G  V  SPA+V +K    I ML     A+       G+L+++  G   ID ST+D   S ++++ +   G  F++APVSG    A +G L  +  G +  +  A   L  +G    + G VG G   K+   +++   M   +E + L  + GLD
Sbjct:   39 KTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNLLLAISMIGTAEAMNLGIRLGLD 236          
BLAST of FC930718 vs. ExPASy Swiss-Prot
Match: GLXR_ECOLI (2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain K12) GN=glxR PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.837e-21
Identity = 61/198 (30.81%), Postives = 105/198 (53.03%), Query Frame = 1
Query:  118 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVYMIMGCMMNTFSEGLVLAEKSGLD 708
            M++GF+GLGIMG  +++NL R G ++ V   T+    DEL++ GA    +  +V +   I   M+ D      V+F + G  +    GK  +DMS++    + + +R +   GG +L+APVSG +  A  G L I+  G++A+++       ++GK    +G  G+G   K+   +I+   +   SE L+ A K+G D
Sbjct:    1 MKLGFIGLGIMGTPMAINLARAGHQLHV--TTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGAD 196          
BLAST of FC930718 vs. ExPASy Swiss-Prot
Match: 3HIDH_CAEEL (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=B0250.5 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.024e-20
Identity = 60/195 (30.77%), Postives = 100/195 (51.28%), Query Frame = 1
Query:  127 GFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLV-ILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVYMIMGCMMNTFSEGLVLAEKSGLD 708
            GF+GLG MG  ++ NL++NG K+ V++   +   E  A G  V   PA++       I +L       +V   + G+ + I PG   +D ST+D   S+++++A       +++AP+SG    A+   L  ++ AG  A +  A + L+++GK    LG VGNG   K+   M++G  M   +E + L    GLD
Sbjct:    5 GFIGLGNMGGHMARNLIKNGKKLIVYDVNKAVVQEFKAEGCEVAAHPADIAAASKEIITVLPSSPHVKAVYQGEAGIFKTIQPGTLCMDSSTIDQIVSLEVAQAAALLKAEYIDAPISGGVTGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAAKICNNMLLGIQMVAVAETMNLGISMGLD 199          
BLAST of FC930718 vs. ExPASy Swiss-Prot
Match: 3HIDH_DROME (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=CG15093 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.280e-20
Identity = 64/199 (32.16%), Postives = 102/199 (51.26%), Query Frame = 1
Query:  124 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVYMIMGCMMNTFSEGLVLAEKSGLDLALY 720
            +GF+GLG MG  ++ NL++ G K+ V++ +   CD L A GATV    +E+ K     I ML + A  +   +D+    + +     +ID ST+  +    + + I++KG  F++APVSG    AE   L  +  G +A Y+   + L  +GKK    G  G G   KL   M++   M   SE + LA + GLD  ++
Sbjct:   31 IGFVGLGNMGANMASNLIKAGHKLHVFDISKPACDGLAAKGATVYAKTSELAKNSDFVITMLPNNAI-VDASYDEM-TADGVNKDTIFIDSSTISPDLVKSLQKKISAKGARFIDAPVSGGVPGAEQATLTFMVGGTEAEYNAVKAVLECMGKKITHCGVYGMGQAAKLCNNMMLAISMIGVSEAMNLAVRQGLDANVF 227          
BLAST of FC930718 vs. ExPASy Swiss-Prot
Match: MMSB_PSEAE (3-hydroxyisobutyrate dehydrogenase OS=Pseudomonas aeruginosa GN=mmsB PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.251e-18
Identity = 63/199 (31.66%), Postives = 96/199 (48.24%), Query Frame = 1
Query:  121 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVYMIMGCMMNTFSEGLVLAEKSGLDLAL 717
            ++ FLGLG MG  ++ NLL+ G +V V++        LV  GA    S  +  +   + I ML       S+     G+L ++      ID ST+  ET+ K++ A  +KG   L+APVSG    A  G L  +  G    +  A   L  +G+  F  G+ G G   K+   M++G +M   +E L L  K+GLD A+
Sbjct:    3 DIAFLGLGNMGGPMAANLLKAGHRVNVFDLQPKAVLGLVEQGAQGADSALQCCEGAEVVISMLPAGQHVESLYLGDDGLLARVAGKPLLIDCSTIAPETARKVAEAAAAKGLTLLDAPVSGGVGGARAGTLSFIVGGPAEGFARARPVLENMGRNIFHAGDHGAGQVAKICNNMLLGILMAGTAEALALGVKNGLDPAV 201          
BLAST of FC930718 vs. ExPASy Swiss-Prot
Match: Y229_SYNY3 (Uncharacterized oxidoreductase slr0229 OS=Synechocystis sp. (strain PCC 6803) GN=slr0229 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.634e-18
Identity = 56/197 (28.43%), Postives = 97/197 (49.24%), Query Frame = 1
Query:  121 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK--CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVYMIMGCMMNTFSEGLVLAEKSGL 705
            ++   GLG+MG  ++ NL++NG++   +NRTL +    E    G  V  S A       I +  + D      ++   GG+ E   P    ID ST+    + +++  +  +G  FL+APV+G    A  G L I+  G+ + ++EA+  L  IG+K    G  G+G  +KL   ++ G      +E + L+E+ G+
Sbjct:    5 KIAVFGLGVMGSPMAQNLVKNGYQTVGYNRTLERPSVQEAAKAGVKVVTSIAVAAANADIILTCVGDEKDVQQLILGSGGIAEYAKPQALIIDCSTIGKTAAYELATNLKLQGLRFLDAPVTGGDVGAINGTLTIMVGGDISDFEEALPVLKSIGEKIVHCGPSGSGQAVKLCNQVLCGIHAIAAAEAIQLSEQLGI 201          
BLAST of FC930718 vs. ExPASy Swiss-Prot
Match: Y1503_SHEFN (Uncharacterized oxidoreductase Sfri_1503 OS=Shewanella frigidimarina (strain NCIMB 400) GN=Sfri_1503 PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.755e-18
Identity = 57/197 (28.93%), Postives = 102/197 (51.78%), Query Frame = 1
Query:  121 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-HGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVYMIMGCMMNTFSEGLVLAEKSGLD 708
            +V F+GLG+MG  ++ +L++ G  VTV+NRT +K  + V  +G     +P +  +   I    + +      VV  + G++  +  G   +D +T   + + +I+  I      FL+APVSG +  AE G L ++  G++A +D     ++   + A  LG VG G   K+V  + +  ++   +EGL  A+ +GLD
Sbjct:    3 KVAFIGLGVMGFPMAGHLVKQGHDVTVYNRTGAKATQWVEQYGGKKADTPKDAAQGQDIVFTCVGNDDDLRQVVLGEHGIVHGMHAGAILVDHTTASADVAREIAAYIEPLNIAFLDAPVSGGQAGAENGALTVMMGGDQAHFDTVKPVISAYSRCAELLGPVGAGQLTKMVNQICIAGVVQGLAEGLHFAKSAGLD 199          
BLAST of FC930718 vs. ExPASy Swiss-Prot
Match: 3HIDH_ARATH (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=At4g20930 PE=2 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 6.866e-17
Identity = 66/212 (31.13%), Postives = 99/212 (46.70%), Query Frame = 1
Query:  109 NKKMEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL---EQICPGKGYIDMSTVDHETSIKISRAITS----------KGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVYMIMGCMMNTFSEGLVLAEKSGL 705
            N+   VGF+GLG MG  +  NL+R G+KVTV +            G +   +P EV +   + I ML   +  + V     G+L     I P   +ID ST+D +T+ KIS A+++          +    L+APVSG    AE G L  +  G +  Y  A   L  +G+ + + G  GNG+  K+   + M   M   SE L L +  G+
Sbjct:   35 NQFQNVGFIGLGNMGFRMVNNLIRAGYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVVITMLPSSSHVMDVYTGTNGLLLGENDIRPAL-FIDSSTIDPQTTRKISLAVSNCNLKEKRDNWEKPVMLDAPVSGGVLAAEAGTLTFMVGGPEDAYLAARPILQSMGRTSIYCGGSGNGSAAKICNNLAMAVSMLGTSEALALGQSLGI 245          
BLAST of FC930718 vs. ExPASy Swiss-Prot
Match: YIHU_SHIFL (Uncharacterized oxidoreductase yihU OS=Shigella flexneri GN=yihU PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.812e-16
Identity = 56/194 (28.87%), Postives = 92/194 (47.42%), Query Frame = 1
Query:  124 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVYMIMGCMMNTFSEGLVLAEKSGL 705
            + F+GLG MG  ++ NLL+ G ++ V++        LV  GAT   +PA+  K     I ML +     +V+F + GV E +      IDMST+    + K+   + +KG   ++ PV  +   A TG L++L+ G     + A   L  +G +    G  G G ++KL+   +   +    +E  VL E   L
Sbjct:    4 IAFIGLGQMGSPMASNLLQQGHQLRVFDVNAEAVRHLVDKGATPAANPAQAAKDAEFIITMLPNGDLVRNVLFGENGVCEGLSTDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSANAITGTLLLLAGGTAEQVERATPILMAMGSELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALNL 197          
The following BLAST results are available for this feature:
BLAST of FC930718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
3HIDH_HUMAN2.062e-2130.303-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_BOVIN4.595e-2129.293-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
GLXR_ECOLI7.837e-2130.812-hydroxy-3-oxopropionate reductase OS=Escherichia... [more]
3HIDH_CAEEL1.024e-2030.77Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
3HIDH_DROME2.280e-2032.16Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
MMSB_PSEAE1.251e-1831.663-hydroxyisobutyrate dehydrogenase OS=Pseudomonas ... [more]
Y229_SYNY31.634e-1828.43Uncharacterized oxidoreductase slr0229 OS=Synechoc... [more]
Y1503_SHEFN4.755e-1828.93Uncharacterized oxidoreductase Sfri_1503 OS=Shewan... [more]
3HIDH_ARATH6.866e-1731.13Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
YIHU_SHIFL5.812e-1628.87Uncharacterized oxidoreductase yihU OS=Shigella fl... [more]

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Properties
Property NameValue
Genbank descriptionC34010E09EF PostHarvC1 Citrus clementina cDNA clone C34010E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930718 ID=FC930718; Name=FC930718; organism=Citrus clementina; type=EST; length=753bp
GATTAAAGATTCTTGCTTTATGTAAGTTTGGACTCTGCTGAGAGTTGCAA
GTAAGTAGATCTGAAAAGCGGAAAAAATTTAGAACACAGAGGAGGAAGAT
ATTGAAAAAACAAGAAAATGGAAGTGGGGTTTCTGGGTTTAGGAATTATG
GGCAAGGCCATTTCTATGAACTTGCTTAGAAATGGATTCAAAGTTACTGT
ATGGAACAGGACTCTCTCTAAGTGTGATGAACTCGTGGCACACGGTGCTA
CAGTTGGAGGAAGTCCAGCAGAAGTAATTAAAAAGTGTACGATTACTATT
GGGATGTTAGCTGATCCTGCGGCTGCACTTTCGGTTGTCTTTGACAAAGG
TGGTGTTTTGGAGCAAATTTGTCCTGGGAAAGGTTACATTGACATGTCAA
CAGTTGATCATGAAACTTCAATAAAGATCAGCCGGGCAATTACATCAAAA
GGCGGTCACTTCCTTGAAGCTCCAGTTTCAGGTAGCAAGCAGCCTGCAGA
AACTGGTCAACTAGTAATCCTTTCTGCTGGGGAGAAGGCACTCTATGATG
AAGCAATTTCAGCTCTCAATGTAATTGGAAAGAAGGCCTTCTTTTTGGGG
GAGGTCGGAAACGGAGCAAAAATGAAACTTGTTGTTTACATGATAATGGG
CTGTATGATGAATACATTTTCTGAAGGACTTGTACTGGCTGAAAAGAGTG
GACTTGACCTCGCACTTTACTGATGTACTGGACCTGGGTGGTATTGCTAA
TCC
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