FC930721

Overview
NameFC930721
Unique NameFC930721
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930721_ssr67 microsatellite FC930721_ssr67:67..78. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12503 contig Ccv1_Contig12503:62..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP2M_DICDI (AP-2 complex subunit mu OS=Dictyostelium discoideum GN=apm2 PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.141e-27
Identity = 59/130 (45.38%), Postives = 90/130 (69.23%), Query Frame = 3
Query:  294 VSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANIL 683
            +SALFL++ KG VL+ R YR D+S   A  F  ++I   G  +++ PV      S+++I+  N+Y++  SRQN NA  +   LH++VD+FK YF+ L+E+S+R+NFV+VYELLDE++DFGYPQ    ++L
Sbjct:    2 ISALFLMNGKGEVLISRIYRDDISRGVANAFRLEVI---GSQETRSPVKLIGSTSFMYIKVGNIYIVGVSRQNVNACMVFEVLHQLVDIFKSYFDNLDEDSIRNNFVLVYELLDEILDFGYPQNCSTDVL 128          
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP1M1_YEAST (AP-1 complex subunit mu-1-I OS=Saccharomyces cerevisiae GN=APM1 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.117e-24
Identity = 56/155 (36.13%), Postives = 95/155 (61.29%), Query Frame = 3
Query:  297 SALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMT-ASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEFHQTDAYRM-------ESTQRPP 737
            SA++  D  G+ L+ R YR D+     ++F   L + +  +    P +  NG+ YLFIQH+++Y++   +  + NAA++  FLH++V+V   Y + +EEES+RDNFV++YELLDE+MD+G PQ TE  +L ++    ++++        +  RPP
Sbjct:    3 SAVYFCDHNGKPLLSRRYRDDIPLSAIDKFPILLSDLEEQSNLIPPCLNHNGLEYLFIQHNDLYVVAIVTSLSANAAAIFTFLHKLVEVLSDYLKTVEEESIRDNFVIIYELLDEVMDYGIPQITETKMLKQYITQKSFKLVKSAKKKRNATRPP 157          
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP2M_CAEEL (AP-2 complex subunit mu OS=Caenorhabditis elegans GN=dpy-23 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.852e-22
Identity = 52/133 (39.10%), Postives = 79/133 (59.40%), Query Frame = 3
Query:  294 VSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEF 692
            +  LF+ + KG VL+ R YR DV+    + F   +I      Q + PV      S+  ++  NV++   +RQN NAA +  FL R  D  + YF +L EE++++NFV++YELLDE++DFGYPQ T+  +L  F
Sbjct:    2 IGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIH--ARQQVRSPVTNMARTSFFHVKRGNVWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQNTDPGVLKTF 132          
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP2MB_DANRE (AP-2 complex subunit mu-1-B OS=Danio rerio GN=ap2m1b PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.510e-21
Identity = 50/133 (37.59%), Postives = 80/133 (60.15%), Query Frame = 3
Query:  294 VSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEF 692
            +  LF+ + KG VL+ R YR D+     + F   +I      Q + PV      S+  ++ SN++L   ++QN NAA +  FL+++ DV   YF ++ EE++++NFV++YELLDE++DFGYPQ +E   L  F
Sbjct:    2 IGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIH--ARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMTAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTF 132          
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP2MA_DANRE (AP-2 complex subunit mu-1-A OS=Danio rerio GN=ap2m1a PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.510e-21
Identity = 50/133 (37.59%), Postives = 80/133 (60.15%), Query Frame = 3
Query:  294 VSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEF 692
            +  LF+ + KG VL+ R YR D+     + F   +I      Q + PV      S+  ++ SN++L   ++QN NAA +  FL+++ DV   YF ++ EE++++NFV++YELLDE++DFGYPQ +E   L  F
Sbjct:    2 IGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIH--ARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMTAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTF 132          
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP2M1_XENTR (AP-2 complex subunit mu-1 OS=Xenopus tropicalis GN=ap2m1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.510e-21
Identity = 50/133 (37.59%), Postives = 80/133 (60.15%), Query Frame = 3
Query:  294 VSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEF 692
            +  LF+ + KG VL+ R YR D+     + F   +I      Q + PV      S+  ++ SN++L   ++QN NAA +  FL+++ DV   YF ++ EE++++NFV++YELLDE++DFGYPQ +E   L  F
Sbjct:    2 IGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIH--ARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMTAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTF 132          
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP2M1_XENLA (AP-2 complex subunit mu-1 OS=Xenopus laevis GN=ap2m1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.510e-21
Identity = 50/133 (37.59%), Postives = 80/133 (60.15%), Query Frame = 3
Query:  294 VSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEF 692
            +  LF+ + KG VL+ R YR D+     + F   +I      Q + PV      S+  ++ SN++L   ++QN NAA +  FL+++ DV   YF ++ EE++++NFV++YELLDE++DFGYPQ +E   L  F
Sbjct:    2 IGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIH--ARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMTAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTF 132          
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP2M1_RAT (AP-2 complex subunit mu OS=Rattus norvegicus GN=Ap2m1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.510e-21
Identity = 50/133 (37.59%), Postives = 80/133 (60.15%), Query Frame = 3
Query:  294 VSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEF 692
            +  LF+ + KG VL+ R YR D+     + F   +I      Q + PV      S+  ++ SN++L   ++QN NAA +  FL+++ DV   YF ++ EE++++NFV++YELLDE++DFGYPQ +E   L  F
Sbjct:    2 IGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIH--ARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTF 132          
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP2M1_PONAB (AP-2 complex subunit mu OS=Pongo abelii GN=AP2M1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.510e-21
Identity = 49/133 (36.84%), Postives = 81/133 (60.90%), Query Frame = 3
Query:  294 VSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEF 692
            +  LF+ + KG VL++R YR D+     + F   +I      Q + PV      S+  ++ SN++L   ++QN +AA +  FL+++ DV   YF ++ EE++++NFV++YELLDE++DFGYPQ +E   L  F
Sbjct:    2 IGGLFIYNHKGEVLIYRVYRDDIGRNAVDAFRVNVIH--ARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVDAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTF 132          
BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP2M1_MOUSE (AP-2 complex subunit mu OS=Mus musculus GN=Ap2m1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.510e-21
Identity = 50/133 (37.59%), Postives = 80/133 (60.15%), Query Frame = 3
Query:  294 VSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSEF 692
            +  LF+ + KG VL+ R YR D+     + F   +I      Q + PV      S+  ++ SN++L   ++QN NAA +  FL+++ DV   YF ++ EE++++NFV++YELLDE++DFGYPQ +E   L  F
Sbjct:    2 IGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIH--ARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTF 132          
The following BLAST results are available for this feature:
BLAST of FC930721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
AP2M_DICDI3.141e-2745.38AP-2 complex subunit mu OS=Dictyostelium discoideu... [more]
AP1M1_YEAST1.117e-2436.13AP-1 complex subunit mu-1-I OS=Saccharomyces cerev... [more]
AP2M_CAEEL8.852e-2239.10AP-2 complex subunit mu OS=Caenorhabditis elegans ... [more]
AP2MB_DANRE1.510e-2137.59AP-2 complex subunit mu-1-B OS=Danio rerio GN=ap2m... [more]
AP2MA_DANRE1.510e-2137.59AP-2 complex subunit mu-1-A OS=Danio rerio GN=ap2m... [more]
AP2M1_XENTR1.510e-2137.59AP-2 complex subunit mu-1 OS=Xenopus tropicalis GN... [more]
AP2M1_XENLA1.510e-2137.59AP-2 complex subunit mu-1 OS=Xenopus laevis GN=ap2... [more]
AP2M1_RAT1.510e-2137.59AP-2 complex subunit mu OS=Rattus norvegicus GN=Ap... [more]
AP2M1_PONAB1.510e-2136.84AP-2 complex subunit mu OS=Pongo abelii GN=AP2M1 P... [more]
AP2M1_MOUSE1.510e-2137.59AP-2 complex subunit mu OS=Mus musculus GN=Ap2m1 P... [more]

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Properties
Property NameValue
Genbank descriptionC34010E12EF PostHarvC1 Citrus clementina cDNA clone C34010E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930721 ID=FC930721; Name=FC930721; organism=Citrus clementina; type=EST; length=739bp
GGCTGCGCGGCTTATGTTACAGCATAGAAGTTAGAAGAAGGCAAGCAGCA
ATAAATAATAGTGAAAGATCGATCGATCTCTCTCCATTACCGTTGGTTGA
TTTAAGGAGTCTGACAGAGACAGTTTATCTTCACCACCATGCATCATCTA
AATGGAGCCACAAAATTTACAACTCCCAGATTCAGTTTCGCATGAATTGT
TGTTCTCACTTCTCAGTTAACGACTTTTATCAATTCCGTCAGATCTCTGA
TTGATCTTTAGAAGCCCTAGAAGAAGACAAAATGGCAGGTGCTGTCTCCG
CACTCTTTCTTCTAGACATAAAGGGCCGTGTTCTGGTGTGGCGCGACTAC
CGTGGTGACGTCTCTGCAAAGCAAGCCGAGCGCTTCTTCACCAAGCTCAT
CGAAAAAGATGGAGATGCACAGTCGCAGGATCCGGTTGTATACGATAATG
GAGTCTCATACTTGTTTATACAGCACTCCAATGTTTATCTTATGACAGCG
TCGAGGCAGAATTGCAATGCTGCCAGCCTTCTTTTCTTTCTACACCGCGT
AGTTGATGTCTTTAAACATTACTTTGAAGAGTTAGAGGAGGAATCGCTTA
GGGATAACTTTGTTGTTGTGTATGAGTTGCTTGATGAAATGATGGACTTT
GGTTATCCTCAATATACAGAAGCGAATATCTTAAGTGAATTTCATCAGAC
TGATGCATATAGGATGGAAAGTACTCAGAGGCCTCCTAT
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