FC930721

Overview
NameFC930721
Unique NameFC930721
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC930721 vs. ExPASy Swiss-Prot
Match: AP1M_DISOM (AP-1 complex subunit mu OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.416e-11
Identity = 41/132 (31.06%), Postives = 69/132 (52.27%), Query Frame = 3 
Query:  294 VSALFLLDIKGRVLVWRDYRGDVSAKQAERFFTKLIEKDGDAQSQDPVVYDNGVSYLFIQHSNVYLMTASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEANILSE 689
            + +LFL++  G V + + +R  VS +    +  +   K G  ++  PV+       +      +  +   +       ++ FLHRV +  + YF E  E S++DN V+VYELL+EM+D G+P  TE+NIL E
Sbjct:    2 IHSLFLMNGGGAVFLEKHWRSVVS-RSVCAYLLEAQLKAGQPENVAPVLATPHHYLVSTHRHGISFVAVIQAEVPPLFVIEFLHRVAETLQDYFGECSEASIKDNVVIVYELLEEMLDNGFPLATESNILKE 132
The following BLAST results are available for this feature:
BLAST of FC930721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
AP1M_DISOM2.416e-1131.06AP-1 complex subunit mu OS=Discopyge ommata PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC34010E12EF PostHarvC1 Citrus clementina cDNA clone C34010E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930721 ID=FC930721; Name=FC930721; organism=Citrus clementina; type=EST; length=739bp
GGCTGCGCGGCTTATGTTACAGCATAGAAGTTAGAAGAAGGCAAGCAGCA
ATAAATAATAGTGAAAGATCGATCGATCTCTCTCCATTACCGTTGGTTGA
TTTAAGGAGTCTGACAGAGACAGTTTATCTTCACCACCATGCATCATCTA
AATGGAGCCACAAAATTTACAACTCCCAGATTCAGTTTCGCATGAATTGT
TGTTCTCACTTCTCAGTTAACGACTTTTATCAATTCCGTCAGATCTCTGA
TTGATCTTTAGAAGCCCTAGAAGAAGACAAAATGGCAGGTGCTGTCTCCG
CACTCTTTCTTCTAGACATAAAGGGCCGTGTTCTGGTGTGGCGCGACTAC
CGTGGTGACGTCTCTGCAAAGCAAGCCGAGCGCTTCTTCACCAAGCTCAT
CGAAAAAGATGGAGATGCACAGTCGCAGGATCCGGTTGTATACGATAATG
GAGTCTCATACTTGTTTATACAGCACTCCAATGTTTATCTTATGACAGCG
TCGAGGCAGAATTGCAATGCTGCCAGCCTTCTTTTCTTTCTACACCGCGT
AGTTGATGTCTTTAAACATTACTTTGAAGAGTTAGAGGAGGAATCGCTTA
GGGATAACTTTGTTGTTGTGTATGAGTTGCTTGATGAAATGATGGACTTT
GGTTATCCTCAATATACAGAAGCGAATATCTTAAGTGAATTTCATCAGAC
TGATGCATATAGGATGGAAAGTACTCAGAGGCCTCCTAT
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