FC930722

Overview
NameFC930722
Unique NameFC930722
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length753
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930722_ssr732 microsatellite FC930722_ssr732:732..743. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15271 contig Ccv1_Contig15271:111..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: THIL_THIVI (Acetyl-CoA acetyltransferase OS=Thiocystis violacea GN=phbA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.807e-17
Identity = 68/183 (37.16%), Postives = 95/183 (51.91%), Query Frame = 1
Query:  208 DDVVIVAAYRTAICKAKRGGFKDTL-ADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNS----ISVVGQ------------VNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            D +VIV A RTAI     GG    L A D+   VLKA+IE+T + P +V ++++G VL  G  +    R     AG P TVP  T+N+ C SGL+AV     A+  G  +I IA G ESM+ +S     S  GQ            V+   + F Q       MG+T+EN+A+++  TR+ QD
Sbjct:    3 DTIVIVDAGRTAI--GTFGGALSALQATDIGTTVLKALIERTGIAPEQVSEVILGQVLTAGCGQN-PARQTTLMAGLPHTVPAMTINKVCGSGLKAVHLAMQAVACGDAEIVIAGGQESMSQSSHVLPRSREGQRMGDWPMKDTMIVDGLWDAFNQCH-----MGVTAENIAKKYAFTREAQD 177          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_SACD2 (3-ketoacyl-CoA thiolase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=fadA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.025e-17
Identity = 54/166 (32.53%), Postives = 87/166 (52.41%), Query Frame = 1
Query:  211 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTR-LNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            DVVIV   RT + ++K G +++  ADDL A ++  ++ +   L+P+++ D++ G V+  G       R     AG P TVP +TVNR C S + A+   A  I AGL D+ +  G+E M    I +   V+P   +          MG+T+E ++   G+TR+  D
Sbjct:    7 DVVIVDYARTPMGRSKNGCYRNVRADDLSADLITGLLARNAALDPAQIDDMIWGCVMQRGEQGFNVARNILLRAGLPHTVPAQTVNRLCGSSMSALHTAAANIMAGLGDVYLVGGVEHM--GHIDMNQHVDPNPALGHSVAQAAGSMGLTAEYLSLLHGITREAMD 170          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: ATOB_ECOLI (Acetyl-CoA acetyltransferase OS=Escherichia coli (strain K12) GN=atoB PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.257e-17
Identity = 64/175 (36.57%), Postives = 95/175 (54.29%), Query Frame = 1
Query:  217 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFT-QARDCLL-----------PMGITSENVAQRFGVTRQEQD 705
            VIV+A RTAI  +  G    T A DL A V+KA IE+ +++   V ++++G VL  G  +    R A   +G  ETV   TVN+ C SGL++VA  A AI+AG     +A G+E+M++    +  +      +   Q  D +L            MGIT+ENVA+ +G+TR+ QD
Sbjct:    5 VIVSAVRTAI-GSFNGSLASTSAIDLGATVIKAAIERAKIDSQHVDEVIMGNVLQAGLGQN-PARQALLKSGLAETVCGFTVNKVCGSGLKSVALAAQAIQAGQAQSIVAGGMENMSLAPYLLDAKARSGYRLGDGQVYDVILRDGLMCATHGYHMGITAENVAKEYGITREMQD 177          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: THIL_CHRVI (Acetyl-CoA acetyltransferase OS=Chromatium vinosum GN=phbA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.407e-16
Identity = 60/178 (33.71%), Postives = 96/178 (53.93%), Query Frame = 1
Query:  208 DDVVIVAAYRTAICKAKRGGFKDTL-ADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLL-----------PMGITSENVAQRFGVTRQEQD 705
            +++VIV A R+AI     GG   +L A ++   VLK ++ +T L P ++ ++++G VL  G  +    R    +AG P +VP  T+N+ C SGL+AV     AI  G  DI IA G ESM+ +S  +    + +       +D ++            MG T+EN+AQ++G TR++QD
Sbjct:    3 ENIVIVDAGRSAI--GTFGGSLSSLSATEIGTAVLKGLLARTGLAPEQIDEVILGQVLTAGVGQN-PARQTTLHAGLPHSVPAMTINKVCGSGLKAVHLAMQAIACGDADIVIAGGQESMSQSSHVLPRSRDGQRMGDWSMKDTMIVDGLWDAFNNYHMGTTAENIAQKYGFTREQQD 177          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_IDILO (3-ketoacyl-CoA thiolase OS=Idiomarina loihiensis GN=fadA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.450e-16
Identity = 56/166 (33.73%), Postives = 89/166 (53.61%), Query Frame = 1
Query:  211 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            D+VIV   RT + ++K G F+ T A+DL A ++K ++E+   ++P E+ DI  G V           R +A  AG P  V   TVNR C S +QA+ D   AI  G  DI +A G+E M    + +   ++    +          MG+T+E ++++FG+TR++QD
Sbjct:    3 DIVIVDCIRTPMGRSKNGVFRHTRAEDLSAALMKGLLERNPEVDPEELEDIYWGCVQQTLEQGFNIARNSALIAGIPHKVAGVTVNRLCGSSMQALHDATRAIMNGDGDIFMAGGVEHM--GHVPMTHGIDFHPGMNKSVAKASGSMGMTAELLSRKFGITREQQD 166          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_AERHH (3-ketoacyl-CoA thiolase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=fadA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.812e-16
Identity = 58/166 (34.94%), Postives = 90/166 (54.22%), Query Frame = 1
Query:  211 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            DVVIV   RT + ++K G F++  A+DL A ++K+++ +   L+P+E+ DI  G V           R AA  AG P+ V   TVNR C S +QA+ D + AI+ G  DI I  G+E M    +S     +P +         +  MG+T+E + +  G++RQ+QD
Sbjct:    3 DVVIVDCIRTPMGRSKGGAFRNVRAEDLSAHLMKSILLRNPNLDPNEIEDIYWGCVQQTLEQGFNIARNAALLAGIPKQVGAVTVNRLCGSSMQALHDASRAIQVGDGDIFIIGGVEHMGHVPMSHGVDFHPGMAKSVAKASGM--MGLTAEMLGKLHGISRQQQD 166          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_PSEE4 (3-ketoacyl-CoA thiolase OS=Pseudomonas entomophila (strain L48) GN=fadA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.591e-16
Identity = 53/167 (31.74%), Postives = 90/167 (53.89%), Query Frame = 1
Query:  211 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDL 708
            DVVIV   RT + ++K G  ++T A+D+ A ++  ++E+  +++P EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI  G  D+ +  G+E M    +S++  V+P   +   A      MG+T+E + +  G+TR++QDL
Sbjct:    7 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNDKIDPKEVEDVIWGCVNQTMEQGWNIARMASLMTPIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVIGGVEHM--GHVSMMHGVDPNPHLSLHAAKASGMMGLTAEMLGKMHGITREQQDL 171          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_ACIBT (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=fadA PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.591e-16
Identity = 55/165 (33.33%), Postives = 86/165 (52.12%), Query Frame = 1
Query:  211 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            DVVIV   R+A+ K+K G F++  AD L A +++A+I + + + +EV D++ G V           R     AG P+TV  +TVNR C S +QA+   A  I     DI I  G+E M    + ++  ++   E           MG+T+E + +  G+TR+EQD
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALIARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHM--GHVGMMHGIDLNPEASKHYAKASNMMGLTAEMLGRMNGITREEQD 170          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_PSEPK (3-ketoacyl-CoA thiolase OS=Pseudomonas putida (strain KT2440) GN=fadA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.914e-16
Identity = 53/167 (31.74%), Postives = 90/167 (53.89%), Query Frame = 1
Query:  211 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDL 708
            DVVIV   RT + ++K G  ++T A+D+ A ++  ++E+  +++P EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI  G  D+ +  G+E M    +S++  V+P   +   A      MG+T+E + +  G+TR++QDL
Sbjct:    7 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNGKVDPKEVEDVIWGCVNQTLEQGWNIARMASLMTPIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM--GHVSMMHGVDPNPHLSLHAAKASGMMGLTAEMLGKMHGITREQQDL 171          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_PSEP1 (3-ketoacyl-CoA thiolase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=fadA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.914e-16
Identity = 53/167 (31.74%), Postives = 90/167 (53.89%), Query Frame = 1
Query:  211 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDL 708
            DVVIV   RT + ++K G  ++T A+D+ A ++  ++E+  +++P EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI  G  D+ +  G+E M    +S++  V+P   +   A      MG+T+E + +  G+TR++QDL
Sbjct:    7 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNGKVDPKEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM--GHVSMMHGVDPNPHLSLHAAKASGMMGLTAEMLGKMHGITREQQDL 171          
The following BLAST results are available for this feature:
BLAST of FC930722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
THIL_THIVI1.807e-1737.16Acetyl-CoA acetyltransferase OS=Thiocystis violace... [more]
FADA_SACD24.025e-1732.533-ketoacyl-CoA thiolase OS=Saccharophagus degradan... [more]
ATOB_ECOLI5.257e-1736.57Acetyl-CoA acetyltransferase OS=Escherichia coli (... [more]
THIL_CHRVI3.407e-1633.71Acetyl-CoA acetyltransferase OS=Chromatium vinosum... [more]
FADA_IDILO4.450e-1633.733-ketoacyl-CoA thiolase OS=Idiomarina loihiensis G... [more]
FADA_AERHH5.812e-1634.943-ketoacyl-CoA thiolase OS=Aeromonas hydrophila su... [more]
FADA_PSEE47.591e-1631.743-ketoacyl-CoA thiolase OS=Pseudomonas entomophila... [more]
FADA_ACIBT7.591e-1633.333-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADA_PSEPK9.914e-1631.743-ketoacyl-CoA thiolase OS=Pseudomonas putida (str... [more]
FADA_PSEP19.914e-1631.743-ketoacyl-CoA thiolase OS=Pseudomonas putida (str... [more]

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Properties
Property NameValue
Genbank descriptionC34010F01EF PostHarvC1 Citrus clementina cDNA clone C34010F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930722 ID=FC930722; Name=FC930722; organism=Citrus clementina; type=EST; length=753bp
GTCATCCCTGGTTCTCGATTCATCAGAACTCAAAAGCTTTCCATTGAAAC
CTGAGAGTGAGAGATGGAGAAAGCTCTTCACAGACAGAGAATTCTGCTTC
AACATCTTCAACCTTCTTCTTCCCAAACCAGTGACTCGCCGGCTATTTCT
GCTTCGATTTGTTCGGCTGGTGAAGCTGCAGGATACCATAGGAAGCCTGC
TTTCGATGATGATGTCGTAATTGTGGCTGCATACCGTACTGCAATTTGCA
AGGCGAAACGTGGAGGCTTCAAGGATACTCTTGCCGATGATCTGCTTGCA
CCTGTTCTAAAGGCAGTGATAGAGAAAACGAGGTTGAATCCCAGTGAAGT
AGGGGATATAGTTGTTGGTACAGTCTTGGCACCTGGCTCAACAAGAGCCA
TGGAGTGTAGGATGGCAGCGTTCTATGCTGGTTTCCCTGAAACGGTGCCC
CTCAGAACTGTCAACAGGCAGTGTTCATCTGGCTTGCAGGCGGTTGCTGA
TGTTGCAACAGCTATAAAAGCTGGATTGTATGACATTGGTATTGCTGCTG
GATTGGAAAGCATGACTGTGAATTCTATTAGCGTTGTTGGCCAAGTTAAC
CCCAAAGTGGAGATCTTTACTCAAGCTCGGGACTGTCTGCTTCCTATGGG
TATCACTTCTGAAAATGTTGCACAGAGATTTGGTGTGACACGACAAGAGC
AAGACCTGGCTGCCGTTGAATCTCATAGGCGTGCTGCTGCTGCAACTGCA
TCT
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