FC930722

Overview
NameFC930722
Unique NameFC930722
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length753
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_PSEOL (3-ketoacyl-CoA thiolase OS=Pseudomonas oleovorans GN=fadA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.914e-16
Identity = 53/167 (31.74%), Postives = 90/167 (53.89%), Query Frame = 1
Query:  211 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDL 708
            DVVIV   RT + ++K G  ++T A+D+ A ++  ++E+  +++P EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI  G  D+ +  G+E M    +S++  V+P   +   A      MG+T+E + +  G+TR++QDL
Sbjct:    7 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNDKVDPKEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM--GHVSMMHGVDPNPHLSLHAAKASGMMGLTAEMLGKMHGITREQQDL 171          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_ACIBY (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain AYE) GN=fadA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.914e-16
Identity = 54/165 (32.73%), Postives = 86/165 (52.12%), Query Frame = 1
Query:  211 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            DVVIV   R+A+ K+K G F++  AD L A +++A++ + + + +EV D++ G V           R     AG P+TV  +TVNR C S +QA+   A  I     DI I  G+E M    + ++  ++   E           MG+T+E + +  G+TR+EQD
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHM--GHVGMMHGIDLNPEASKHYAKASNMMGLTAEMLGRMNGITREEQD 170          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_ACIBS (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain SDF) GN=fadA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.914e-16
Identity = 54/165 (32.73%), Postives = 86/165 (52.12%), Query Frame = 1
Query:  211 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            DVVIV   R+A+ K+K G F++  AD L A +++A++ + + + +EV D++ G V           R     AG P+TV  +TVNR C S +QA+   A  I     DI I  G+E M    + ++  ++   E           MG+T+E + +  G+TR+EQD
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHM--GHVGMMHGIDLNPEASKHYAKASNMMGLTAEMLGRMNGITREEQD 170          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_ACIBC (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain ACICU) GN=fadA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.914e-16
Identity = 54/165 (32.73%), Postives = 86/165 (52.12%), Query Frame = 1
Query:  211 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            DVVIV   R+A+ K+K G F++  AD L A +++A++ + + + +EV D++ G V           R     AG P+TV  +TVNR C S +QA+   A  I     DI I  G+E M    + ++  ++   E           MG+T+E + +  G+TR+EQD
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHM--GHVGMMHGIDLNPEASKHYAKASNMMGLTAEMLGRMNGITREEQD 170          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_ACIB5 (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain AB0057) GN=fadA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.914e-16
Identity = 54/165 (32.73%), Postives = 86/165 (52.12%), Query Frame = 1
Query:  211 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            DVVIV   R+A+ K+K G F++  AD L A +++A++ + + + +EV D++ G V           R     AG P+TV  +TVNR C S +QA+   A  I     DI I  G+E M    + ++  ++   E           MG+T+E + +  G+TR+EQD
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHM--GHVGMMHGIDLNPEASKHYAKASNMMGLTAEMLGRMNGITREEQD 170          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_ACIB3 (3-ketoacyl-CoA thiolase OS=Acinetobacter baumannii (strain AB307-0294) GN=fadA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.914e-16
Identity = 54/165 (32.73%), Postives = 86/165 (52.12%), Query Frame = 1
Query:  211 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            DVVIV   R+A+ K+K G F++  AD L A +++A++ + + + +EV D++ G V           R     AG P+TV  +TVNR C S +QA+   A  I     DI I  G+E M    + ++  ++   E           MG+T+E + +  G+TR+EQD
Sbjct:    8 DVVIVDGVRSAMGKSKNGMFRNVRADSLSAELVRALVARNQFDVNEVEDLIWGCVNQTLEQGMNIGRNIGLLAGLPKTVAGQTVNRLCGSSMQAIHTAAAQIATNQGDIFIIGGVEHM--GHVGMMHGIDLNPEASKHYAKASNMMGLTAEMLGRMNGITREEQD 170          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: ATOB_HAEIN (Acetyl-CoA acetyltransferase OS=Haemophilus influenzae GN=atoB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.914e-16
Identity = 58/178 (32.58%), Postives = 98/178 (55.06%), Query Frame = 1
Query:  208 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFT-QARDCLLP-----------MGITSENVAQRFGVTRQEQD 705
            ++VVIV+A RT I  +  G      A DL A V++  I++  +  + V ++++G VL  G  +    R AA  AG  + +P  T+N+ C SGL++VA  A +I +G  DI +  G+E+M+     +  +V   V++     RD ++            MGIT+EN+A+++G++RQ QD
Sbjct:    2 ENVVIVSAVRTPI-GSFNGALSSVSAVDLGAIVIQEAIKRANIESALVNEVIMGNVLQAGLGQN-PARQAALKAGIEKEIPSLTINKVCGSGLKSVALGAQSIISGDADIVVVGGMENMSQAPYLLDSKVRQGVKMGNLTLRDTMIEDGLTCASNHYHMGITAENIAEQYGISRQAQD 177          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_PSEPU (3-ketoacyl-CoA thiolase OS=Pseudomonas putida GN=fadA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.295e-15
Identity = 53/167 (31.74%), Postives = 90/167 (53.89%), Query Frame = 1
Query:  211 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDL 708
            DVVIV   RT + ++K G  ++T A+D+ A ++  ++E+  +++P EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI  G  D+ +  G+E M    +S++  V+P   +   A      MG+T+E + +  G+TR++QDL
Sbjct:    7 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNDKVDPKEVEDVIWGCVNQTLEQGWNIARMASLMTPIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVIGGVEHM--GHVSMMHGVDPNPHLSLHAAKASGMMGLTAEMLGKMHGITREQQDL 171          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: THIL_RHIME (Acetyl-CoA acetyltransferase OS=Rhizobium meliloti GN=phbA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.691e-15
Identity = 62/174 (35.63%), Postives = 96/174 (55.17%), Query Frame = 1
Query:  214 VVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTV--NSISVVG--QVNPKVEIFTQARDCLLP------MGITSENVAQRFGVTRQEQD 705
            +VI +A RTA+  +  G F +TLA +L A  +KAV+E+  +   EV ++++G VL P        R AA  AG P+      +N+ C SGL+AVA     I  G   + +A G+ESM++  +   + G  ++     I T  +D L        MGIT+ENVA+++ +TR+EQD
Sbjct:    6 IVIASAARTAV-GSFNGAFGNTLAHELGAAAIKAVLERAGVEAGEVDEVILGQVL-PAGEGQNPARQAAMKAGLPQEKTAWGMNQLCGSGLRAVALGMQQIATGDAKVIVAGGMESMSMAPHCAHLRGGVKMGDYKMIDTMIKDGLTDAFYGYHMGITAENVARKWQLTREEQD 177          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_PSEHT (3-ketoacyl-CoA thiolase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=fadA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.691e-15
Identity = 55/164 (33.54%), Postives = 86/164 (52.44%), Query Frame = 1
Query:  217 VIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            VIV   RT + ++K G FK+  A+DL A ++K ++++   ++P+ + DI  G V           R AA  AG P +VP  TVNR C S +QA+ D A AI  G  D  +  G+E M    ++     +P   + T        MG+T+E +A   G++R++QD
Sbjct:    5 VIVDCIRTPMGRSKGGVFKNKRAEDLSAHLMKGLLDRNPAVDPASIDDIYWGCVQQTLEQGFNVARNAALLAGIPHSVPAVTVNRLCGSSMQALHDAARAIMTGAGDTYLIGGVEHMGHVPMTHGNDFHP--GLATSIAQAAGSMGLTAEYLATLHGISREQQD 166          
The following BLAST results are available for this feature:
BLAST of FC930722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
FADA_PSEOL9.914e-1631.743-ketoacyl-CoA thiolase OS=Pseudomonas oleovorans ... [more]
FADA_ACIBY9.914e-1632.733-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADA_ACIBS9.914e-1632.733-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADA_ACIBC9.914e-1632.733-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADA_ACIB59.914e-1632.733-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
FADA_ACIB39.914e-1632.733-ketoacyl-CoA thiolase OS=Acinetobacter baumannii... [more]
ATOB_HAEIN9.914e-1632.58Acetyl-CoA acetyltransferase OS=Haemophilus influe... [more]
FADA_PSEPU1.295e-1531.743-ketoacyl-CoA thiolase OS=Pseudomonas putida GN=f... [more]
THIL_RHIME1.691e-1535.63Acetyl-CoA acetyltransferase OS=Rhizobium meliloti... [more]
FADA_PSEHT1.691e-1533.543-ketoacyl-CoA thiolase OS=Pseudoalteromonas halop... [more]

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Properties
Property NameValue
Genbank descriptionC34010F01EF PostHarvC1 Citrus clementina cDNA clone C34010F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930722 ID=FC930722; Name=FC930722; organism=Citrus clementina; type=EST; length=753bp
GTCATCCCTGGTTCTCGATTCATCAGAACTCAAAAGCTTTCCATTGAAAC
CTGAGAGTGAGAGATGGAGAAAGCTCTTCACAGACAGAGAATTCTGCTTC
AACATCTTCAACCTTCTTCTTCCCAAACCAGTGACTCGCCGGCTATTTCT
GCTTCGATTTGTTCGGCTGGTGAAGCTGCAGGATACCATAGGAAGCCTGC
TTTCGATGATGATGTCGTAATTGTGGCTGCATACCGTACTGCAATTTGCA
AGGCGAAACGTGGAGGCTTCAAGGATACTCTTGCCGATGATCTGCTTGCA
CCTGTTCTAAAGGCAGTGATAGAGAAAACGAGGTTGAATCCCAGTGAAGT
AGGGGATATAGTTGTTGGTACAGTCTTGGCACCTGGCTCAACAAGAGCCA
TGGAGTGTAGGATGGCAGCGTTCTATGCTGGTTTCCCTGAAACGGTGCCC
CTCAGAACTGTCAACAGGCAGTGTTCATCTGGCTTGCAGGCGGTTGCTGA
TGTTGCAACAGCTATAAAAGCTGGATTGTATGACATTGGTATTGCTGCTG
GATTGGAAAGCATGACTGTGAATTCTATTAGCGTTGTTGGCCAAGTTAAC
CCCAAAGTGGAGATCTTTACTCAAGCTCGGGACTGTCTGCTTCCTATGGG
TATCACTTCTGAAAATGTTGCACAGAGATTTGGTGTGACACGACAAGAGC
AAGACCTGGCTGCCGTTGAATCTCATAGGCGTGCTGCTGCTGCAACTGCA
TCT
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