FC930722

Overview
NameFC930722
Unique NameFC930722
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length753
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_PSEPF (3-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens (strain Pf0-1) GN=fadA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.209e-15
Identity = 53/166 (31.93%), Postives = 91/166 (54.82%), Query Frame = 1
Query:  211 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEK-TRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            DVVIV   RT + ++K G  ++T A+D+ A ++  ++E+ T+++P+EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI  G  D+ +  G+E M    +S++  V+P   +   A      MG+T+E + +  G+TR++QD
Sbjct:    7 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNTKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAGQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM--GHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGITREQQD 170          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_AERS4 (3-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (strain A449) GN=fadA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.209e-15
Identity = 57/166 (34.34%), Postives = 89/166 (53.61%), Query Frame = 1
Query:  211 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            DVVIV   RT + ++K G F++  A+DL A ++ +++ +   L+P+E+ DI  G V           R AA  AG P+ V   TVNR C S +QA+ D + AI+ G  DI I  G+E M    +S     +P +         +  MG+T+E + +  G++RQ+QD
Sbjct:    3 DVVIVDCIRTPMGRSKGGAFRNVRAEDLSAHLMSSILLRNPNLDPNEIEDIYWGCVQQTLEQGFNIARNAALLAGIPKQVGAVTVNRLCGSSMQALHDASRAIQVGDGDIFIIGGVEHMGHVPMSHGVDFHPGMAKSVAKASGM--MGLTAEMLGKLHGISRQQQD 166          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: PCAF_ACIAD (Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=pcaF PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.885e-15
Identity = 66/179 (36.87%), Postives = 91/179 (50.84%), Query Frame = 1
Query:  220 IVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQV------NPKVEIFTQARDCLLP----------MGITSENVAQRFGVTRQEQD 705
            IV A RT   +   GG     ADDL A  + A+IE+   +N ++V D++ G     G       RM+A  AG P  VP  TVNR C S L A+A  A AIKAG   + IA G+ESM+  +  V+G+         K+E  T     + P          M  T+ENVA++FG+ R++QD
Sbjct:    6 IVDAIRTPFGRYA-GGLAAVRADDLGAIPIAALIERNPSVNWAQVDDVIYGCANQAGEDNRNVGRMSALLAGLPVEVPATTVNRLCGSSLDAIAMAARAIKAGEAHLIIAGGVESMS-RAPYVMGKSEGAFGRTQKIEDTTMGWRFINPKLKAMYGVDTMPQTAENVAEQFGIQREDQD 182          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_PSYCK (3-ketoacyl-CoA thiolase OS=Psychrobacter cryohalolentis (strain K5) GN=fadA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.885e-15
Identity = 53/165 (32.12%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  211 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            DVVIV   R+A+ K K G F+   AD + A +++A++E+   +P +V DI+ G V           R     AG P+T   +T+NR C S +QA+   A  I  G  D+ I  G+E M    + ++  V+   E           MG+T+E + +   +TR+EQD
Sbjct:    8 DVVIVDGVRSAMGKTKNGMFRHVRADSMSAELVRALVERNDFDPRDVEDIIWGCVNQTLEQGLNIGRNIGLLAGIPKTAGGQTINRLCGSSMQALHTAAAQIMTGQGDVFIIGGVEHM--GHVGMMHGVDLNPEASKHYAKASNMMGLTAEMLGRMNNITREEQD 170          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_PSYA2 (3-ketoacyl-CoA thiolase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=fadA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.885e-15
Identity = 53/165 (32.12%), Postives = 83/165 (50.30%), Query Frame = 1
Query:  211 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            DVVIV   R+A+ K K G F+   AD + A +++A++E+   +P +V DI+ G V           R     AG P+T   +TVNR C S +QA+   A  I  G  D+ I  G+E M    + ++  ++   E           MG+T+E + +   +TR+EQD
Sbjct:    8 DVVIVDGVRSAMGKTKNGMFRHVRADSMSAELVRALVERNDFDPRDVEDIIWGCVNQTLEQGLNIGRNIGLLAGIPKTAGGQTVNRLCGSSMQALHTAAAQIMTGQGDVFIIGGVEHM--GHVGMMHGIDLNPEASKHYAKASNMMGLTAEMLGRMNNITREEQD 170          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: CATF_ACIAD (Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. (strain ADP1) GN=catF PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.885e-15
Identity = 66/179 (36.87%), Postives = 91/179 (50.84%), Query Frame = 1
Query:  220 IVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQV------NPKVEIFTQARDCLLP----------MGITSENVAQRFGVTRQEQD 705
            IV A RT   +   GG     ADDL A  + A+IE+   +N ++V D++ G     G       RM+A  AG P  VP  TVNR C S L A+A  A AIKAG   + IA G+ESM+  +  V+G+         K+E  T     + P          M  T+ENVA++FG+ R++QD
Sbjct:    6 IVDAIRTPFGRYA-GGLAAVRADDLGAIPIAALIERNPSVNWAQVDDVIYGCANQAGEDNRNVGRMSALLAGLPVEVPATTVNRLCGSSLDAIAMAARAIKAGEAHLIIAGGVESMS-RAPYVMGKSEGAFGRTQKIEDTTMGWRFINPKLKAMYGVDTMPQTAENVAEQFGIQREDQD 182          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_PSEFR (3-ketoacyl-CoA thiolase OS=Pseudomonas fragi GN=fadA PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.920e-15
Identity = 52/166 (31.33%), Postives = 90/166 (54.22%), Query Frame = 1
Query:  211 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEK-TRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            DVVIV   RT + ++K G  ++T A+D+ A ++  V+E+ ++++P EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI  G  D+ +  G+E M    +S++  V+P   +   A      MG+T+E + +  G++R++QD
Sbjct:    7 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM--GHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGISREQQD 170          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_MARAV (3-ketoacyl-CoA thiolase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=fadA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.426e-15
Identity = 51/166 (30.72%), Postives = 86/166 (51.81%), Query Frame = 1
Query:  211 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            DVV+V   RT + +AK G F++  A+ L A +++A+ E+  +L+P EV D++ G V           R  +     P     +TVNR C S + A+   A AI+ G  D+ +  G+E M    ++     NP    ++     +  MG+T+E +A+  G+TR++QD
Sbjct:    7 DVVVVDCVRTPMGRAKNGCFRNVRAETLSAALIEALFERNPKLDPKEVEDVIWGCVNQTKEQGFNVARQISLLTRIPHESAAQTVNRLCGSAMSAIHTAAQAIQTGNGDVFLVGGVEHMGHVPMTEGFDHNPAASKYSAKASNM--MGLTAEMLAKMHGITREQQD 170          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_ALISL (3-ketoacyl-CoA thiolase OS=Aliivibrio salmonicida (strain LFI1238) GN=fadA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.426e-15
Identity = 53/166 (31.93%), Postives = 89/166 (53.61%), Query Frame = 1
Query:  211 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            +VVIV   RT + ++K G F+ T A+DL A ++K ++E+   ++P+++ DI  G V           R A+  AG P+++   TVNR C S +QA+ D + AI  G  DI I  G+E M    + +   V+    +          MG+T+E + +  G++R++QD
Sbjct:    3 NVVIVDCIRTPMGRSKNGVFRHTRAEDLSAHLMKGLLERNPNVDPNQIEDIYWGCVQQTLEQGFNIARNASLLAGLPKSIAATTVNRLCGSSMQALHDASRAIMVGDADICIIGGVEHM--GHVPMNHGVDFHSGLSKNVAKASGMMGLTAEMLGKMHGISREQQD 166          
BLAST of FC930722 vs. ExPASy Swiss-Prot
Match: FADA_PSEF5 (3-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=fadA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.393e-15
Identity = 52/166 (31.33%), Postives = 90/166 (54.22%), Query Frame = 1
Query:  211 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKT-RLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQD 705
            DVVIV   RT + ++K G  ++T A+D+ A ++  ++E+  +++P+EV D++ G V           RMA+     P T   +TV+R C S + A+   A AI  G  D+ +  G+E M    +S++  V+P   +   A      MG+T+E + +  G+TR++QD
Sbjct:    7 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKLLERNAKVDPAEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAGQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM--GHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGITREQQD 170          
The following BLAST results are available for this feature:
BLAST of FC930722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
FADA_PSEPF2.209e-1531.933-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens... [more]
FADA_AERS42.209e-1534.343-ketoacyl-CoA thiolase OS=Aeromonas salmonicida (... [more]
PCAF_ACIAD2.885e-1536.87Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. ... [more]
FADA_PSYCK2.885e-1532.123-ketoacyl-CoA thiolase OS=Psychrobacter cryohalol... [more]
FADA_PSYA22.885e-1532.123-ketoacyl-CoA thiolase OS=Psychrobacter arcticus ... [more]
CATF_ACIAD2.885e-1536.87Beta-ketoadipyl-CoA thiolase OS=Acinetobacter sp. ... [more]
FADA_PSEFR4.920e-1531.333-ketoacyl-CoA thiolase OS=Pseudomonas fragi GN=fa... [more]
FADA_MARAV6.426e-1530.723-ketoacyl-CoA thiolase OS=Marinobacter aquaeolei ... [more]
FADA_ALISL6.426e-1531.933-ketoacyl-CoA thiolase OS=Aliivibrio salmonicida ... [more]
FADA_PSEF58.393e-1531.333-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens... [more]

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Properties
Property NameValue
Genbank descriptionC34010F01EF PostHarvC1 Citrus clementina cDNA clone C34010F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930722 ID=FC930722; Name=FC930722; organism=Citrus clementina; type=EST; length=753bp
GTCATCCCTGGTTCTCGATTCATCAGAACTCAAAAGCTTTCCATTGAAAC
CTGAGAGTGAGAGATGGAGAAAGCTCTTCACAGACAGAGAATTCTGCTTC
AACATCTTCAACCTTCTTCTTCCCAAACCAGTGACTCGCCGGCTATTTCT
GCTTCGATTTGTTCGGCTGGTGAAGCTGCAGGATACCATAGGAAGCCTGC
TTTCGATGATGATGTCGTAATTGTGGCTGCATACCGTACTGCAATTTGCA
AGGCGAAACGTGGAGGCTTCAAGGATACTCTTGCCGATGATCTGCTTGCA
CCTGTTCTAAAGGCAGTGATAGAGAAAACGAGGTTGAATCCCAGTGAAGT
AGGGGATATAGTTGTTGGTACAGTCTTGGCACCTGGCTCAACAAGAGCCA
TGGAGTGTAGGATGGCAGCGTTCTATGCTGGTTTCCCTGAAACGGTGCCC
CTCAGAACTGTCAACAGGCAGTGTTCATCTGGCTTGCAGGCGGTTGCTGA
TGTTGCAACAGCTATAAAAGCTGGATTGTATGACATTGGTATTGCTGCTG
GATTGGAAAGCATGACTGTGAATTCTATTAGCGTTGTTGGCCAAGTTAAC
CCCAAAGTGGAGATCTTTACTCAAGCTCGGGACTGTCTGCTTCCTATGGG
TATCACTTCTGAAAATGTTGCACAGAGATTTGGTGTGACACGACAAGAGC
AAGACCTGGCTGCCGTTGAATCTCATAGGCGTGCTGCTGCTGCAACTGCA
TCT
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