FC930724

Overview
NameFC930724
Unique NameFC930724
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930724_ssr73 microsatellite FC930724_ssr73:73..88. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15208 contig Ccv1_Contig15208:1..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930724 vs. ExPASy Swiss-Prot
Match: KPYK2_SYNY3 (Pyruvate kinase 2 OS=Synechocystis sp. (strain PCC 6803) GN=pyk2 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.214e-17
Identity = 50/137 (36.50%), Postives = 76/137 (55.47%), Query Frame = 2
Query:  302 KTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILCAVMLDTKGPEIRTG-FLKDGKPIQLKEGQEITVSTDYDFKGNEEMITMSYKKLPVDVKPGNTILCADGTITLTVLSCD 709
            +TKIV T+GPA++S  +L +L++AG    R NFSHG H Y Q+++  +R           ++ D +GP+IR G FL D   +QLK G   T+ T    +  E + ++SY+ L  +V  G  IL  DG + + V   D
Sbjct:    9 RTKIVATIGPATQSKEVLRQLIQAGATTFRLNFSHGDHAYHQQSIRLIRQIAFELNQPVGILQDLQGPKIRVGKFLNDAGSVQLKNGDPYTL-TSRPVECTETISSISYEYLADEVPSGARILLDDGKLEMLVEEVD 144          
BLAST of FC930724 vs. ExPASy Swiss-Prot
Match: KPYK_MYCIT (Pyruvate kinase OS=Mycobacterium intracellulare GN=pyk PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.060e-16
Identity = 49/130 (37.69%), Postives = 73/130 (56.15%), Query Frame = 2
Query:  308 KIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILCAVMLDTKGPEIRTGFLKDGKPIQLKEGQEITVSTDYDFKGNEEMITMSYKKLPVDVKPGNTILCADGTITLTV 697
            KIVCTLGPA+ S  ++  L+ AGM+VAR NFSHG +   +     +R A   T     V+ D +GP+IR G    G P    +G+ + + T  D +G+ + ++ +YKKL  D   G+ +L  DG + L V
Sbjct:    6 KIVCTLGPATNSDELILALVEAGMDVARLNFSHGDYADHKAAYERVRVASDATGRAVGVLADLQGPKIRLGRFATG-PTYWADGETVRI-TVADCEGSHDRVSTTYKKLAEDAAVGDRVLVDDGKVCLVV 133          
BLAST of FC930724 vs. ExPASy Swiss-Prot
Match: KPYK1_SYNY3 (Pyruvate kinase 1 OS=Synechocystis sp. (strain PCC 6803) GN=pyk1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.084e-16
Identity = 48/134 (35.82%), Postives = 77/134 (57.46%), Query Frame = 2
Query:  302 KTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILCAVMLDTKGPEIRTGFLKDGKPIQLKEGQEITVSTDYDFKGNEEMITMSYKKLPVDVKPGNTILCADGTITLTVLS 703
            +TKIV T+GPAS SV ++ +++ AGMNVAR NFSHG++E     +  LR+          ++ D +GP+IR G L  G+  QL+EG+++++        +   + + Y  L  + K G  IL  DG + + V+S
Sbjct:   17 RTKIVATIGPASSSVEVIRQMVDAGMNVARLNFSHGSYEDHATMVRLLRSVEQEMDTPITLLQDLQGPKIRIGQLPGGEK-QLREGEKVSLVPVEIGDRHPGAVGIDYPHLATEAKVGERILLDDGLLEMKVVS 149          
BLAST of FC930724 vs. ExPASy Swiss-Prot
Match: KPYK_ASHGO (Pyruvate kinase OS=Ashbya gossypii GN=PYK1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.028e-16
Identity = 48/139 (34.53%), Postives = 80/139 (57.55%), Query Frame = 2
Query:  296 LPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAA--MHNTQILCAVMLDTKGPEIRTGFLKDGKPIQLKEGQEITVSTD--YDFKGNEEMITMSYKKLPVDVKPGNTILCADGTITLTVL 700
            L +T I+ T+GP + +   L +L +AG+N+ R NFSHG++EY Q  ++N R +  ++  + L A+ LDTKGPEIRTG   D     +    E+  +TD  Y    +++++ + YK +   ++ G  I   DG ++  VL
Sbjct:   19 LRRTSIIGTIGPKTNNPETLVELRKAGLNIVRMNFSHGSYEYHQSVIDNARKSEELYPGRPL-AIALDTKGPEIRTGTTVDNVDYPIPPNHEMIFTTDDQYAKSCDDKVMFVDYKNITKVIEKGRVIYVDDGVLSFEVL 156          
BLAST of FC930724 vs. ExPASy Swiss-Prot
Match: KPYK2_YEAST (Pyruvate kinase 2 OS=Saccharomyces cerevisiae GN=PYK2 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.531e-15
Identity = 45/140 (32.14%), Postives = 78/140 (55.71%), Query Frame = 2
Query:  290 KRLPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNN-LRAAMHNTQILCAVMLDTKGPEIRTGFLKDGKPIQLKEGQEITVSTDYDF--KGNEEMITMSYKKLPVDVKPGNTILCADGTITLTVL 700
            ++L +T I+ T+GP + S   +  L +AG+N+ R NFSHG++E+ Q  + N +++         A+ LDTKGPEIRTG   + + + +    ++  +TD  F    N++++ + Y  L   + PG  I   DG ++  VL
Sbjct:   18 QQLRRTSIIGTIGPKTNSCEAITALRKAGLNIIRLNFSHGSYEFHQSVIENAVKSEQQFPGRPLAIALDTKGPEIRTGRTLNDQDLYIPVDHQMIFTTDASFANTSNDKIMYIDYANLTKVIVPGRFIYVDDGILSFKVL 157          
BLAST of FC930724 vs. ExPASy Swiss-Prot
Match: KPYA_TOBAC (Pyruvate kinase isozyme A, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.531e-15
Identity = 46/135 (34.07%), Postives = 71/135 (52.59%), Query Frame = 2
Query:  302 KTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILCAVMLDTKGPEIRTGFLKDGKPIQLKEGQ--EITVSTDYDFKGNEEMITMSYKKLPVDVKPGNTILCADGTITLTVL 700
            +TK++CT+GPA+     LE+L   GMNVAR N  HGT E+ +  +  LR          A+M+DT+G EI  G L      + ++G+    TV + +D    E  +T++Y     DVK G+ +L   G +   V+
Sbjct:  115 RTKLICTIGPATCGFEQLERLAEGGMNVARINMCHGTREWHRMVIERLRRLNEEKGFAVAIMMDTEGSEIHMGDLGGASSAKAEDGEIWNFTVRS-FDPPLPERTVTVNYDGFAEDVKVGDELLVDGGMVRFEVI 248          
BLAST of FC930724 vs. ExPASy Swiss-Prot
Match: KPYA_RICCO (Pyruvate kinase isozyme A, chloroplastic OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.531e-15
Identity = 47/134 (35.07%), Postives = 68/134 (50.75%), Query Frame = 2
Query:  302 KTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILCAVMLDTKGPEIRTGFLKDGKPIQLKEGQEITVST-DYDFKGNEEMITMSYKKLPVDVKPGNTILCADGTITLTVL 700
            +TK+VCT+GPA+     LE L   GMNVAR N  HGT E+ +  +  +R          A+M+DT+G EI  G L      + ++G+  T S   YD    E  I ++Y     DVK G+ +L   G +   V+
Sbjct:  105 RTKLVCTIGPATCGFEELEALAVGGMNVARINMCHGTREWHKSVIERVRRLNEEKGFAVAIMMDTEGSEIHMGDLGGASSAKAEDGEIWTFSVRAYDSPRPERTINVNYDGFAEDVKVGDELLVDGGMVRFEVI 238          
BLAST of FC930724 vs. ExPASy Swiss-Prot
Match: KPYK_MYCTU (Pyruvate kinase OS=Mycobacterium tuberculosis GN=pyk PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 45/130 (34.62%), Postives = 72/130 (55.38%), Query Frame = 2
Query:  308 KIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILCAVMLDTKGPEIRTGFLKDGKPIQLKEGQEITVSTDYDFKGNEEMITMSYKKLPVDVKPGNTILCADGTITLTV 697
            KIVCTLGPA++   ++  L+ AGM+VAR NFSHG ++  +     +R A   T     V+ D +GP+IR G    G      EG+ + ++     +G+ + ++ +YK+L  D   G+ +L  DG + L V
Sbjct:    6 KIVCTLGPATQRDDLVRALVEAGMDVARMNFSHGDYDDHKVAYERVRVASDATGRAVGVLADLQGPKIRLGRFASG-ATHWAEGETVRITVG-ACEGSHDRVSTTYKRLAQDAVAGDRVLVDDGKVALVV 133          
BLAST of FC930724 vs. ExPASy Swiss-Prot
Match: KPYK_BUCAP (Pyruvate kinase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=pykA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15
Identity = 49/140 (35.00%), Postives = 74/140 (52.86%), Query Frame = 2
Query:  293 RLPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAAMHNTQILCAVMLDTKGPEIRTGFLKDGKPIQLKEGQEITVSTDYDFK-GNEEMITMSYKKLPVDVKPGNTILCADGTITLTVLSCD 709
            R+ +TKIV TLGP++     LEK++ +G NV R NFSHG+ E  ++     +  M       A++ D +GP+IR    K    I LK      +  + + K GN E + + YKKLP D+   + +L  DG I L V+  +
Sbjct:    4 RVRRTKIVATLGPSTDKANNLEKIILSGANVLRLNFSHGSSEEHKKRAKKAKEIMFKLNCHIALLGDLQGPKIRISKFKKNS-IFLKVNDVFILDANLNEKNGNNERVGIDYKKLPNDLNVNDILLLDDGRIQLKVIKIE 142          
BLAST of FC930724 vs. ExPASy Swiss-Prot
Match: KPYK_SACKL (Pyruvate kinase OS=Saccharomyces kluyveri GN=PYK1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.296e-14
Identity = 47/139 (33.81%), Postives = 78/139 (56.12%), Query Frame = 2
Query:  296 LPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYQQETLNNLRAA--MHNTQILCAVMLDTKGPEIRTGFLKDGKPIQLKEGQEITVSTD--YDFKGNEEMITMSYKKLPVDVKPGNTILCADGTITLTVL 700
            L +T I+ T+GP + +   L  L +AG+N+ R NFSHG++EY Q  ++N R +  ++  + L A+ LDTKGPEIRTG   +     +    E+  S D  Y    +++++ + YK +   ++ G  I   DG ++  VL
Sbjct:   19 LRRTSIIGTIGPKTNNPETLVALRKAGLNIVRMNFSHGSYEYHQSVIDNARKSEELYPGRPL-AIALDTKGPEIRTGTTTNEVDYPIPPNHEMIFSIDDKYAKACDDKVMYIDYKNITKVIEKGKIIYVDDGVLSFEVL 156          
The following BLAST results are available for this feature:
BLAST of FC930724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
KPYK2_SYNY36.214e-1736.50Pyruvate kinase 2 OS=Synechocystis sp. (strain PCC... [more]
KPYK_MYCIT1.060e-1637.69Pyruvate kinase OS=Mycobacterium intracellulare GN... [more]
KPYK1_SYNY33.084e-1635.82Pyruvate kinase 1 OS=Synechocystis sp. (strain PCC... [more]
KPYK_ASHGO4.028e-1634.53Pyruvate kinase OS=Ashbya gossypii GN=PYK1 PE=3 SV... [more]
KPYK2_YEAST1.531e-1532.14Pyruvate kinase 2 OS=Saccharomyces cerevisiae GN=P... [more]
KPYA_TOBAC1.531e-1534.07Pyruvate kinase isozyme A, chloroplastic OS=Nicoti... [more]
KPYA_RICCO1.531e-1535.07Pyruvate kinase isozyme A, chloroplastic OS=Ricinu... [more]
KPYK_MYCTU3.410e-1534.62Pyruvate kinase OS=Mycobacterium tuberculosis GN=p... [more]
KPYK_BUCAP4.453e-1535.00Pyruvate kinase OS=Buchnera aphidicola subsp. Schi... [more]
KPYK_SACKL1.296e-1433.81Pyruvate kinase OS=Saccharomyces kluyveri GN=PYK1 ... [more]

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Properties
Property NameValue
Genbank descriptionC34010F03EF PostHarvC1 Citrus clementina cDNA clone C34010F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930724 ID=FC930724; Name=FC930724; organism=Citrus clementina; type=EST; length=716bp
GACTAGTAACCAGTCAGGTACGCCCCTCACTCTCGTCTGAGTTTATACAA
TTTAGTGATTTACTAATAAATGAATAAATAAATAAATAAAAGGCAGAAAC
GAATAATTACAAGTAAAAATCAGAATTAGACACTGGCATTTAGCGCCGTG
GAGAAGCAAAGGTGTGCCAGCGAACAGCTGTTCTGTTGGGGTAACTGACT
GATATATTCGTTATTGTGAACTAGACTTGATAAGGTAAGCTATGGCGAAC
ATAGATATAGAGGGACTCTTGAGAGATGTGCCAAATGATAAGCGGTTGCC
GAAGACGAAGATTGTGTGTACTTTAGGTCCTGCTTCCCGTTCTGTGCCGA
TGCTTGAGAAGCTTCTGAGGGCTGGAATGAATGTTGCTCGTTTCAATTTC
TCTCACGGTACGCACGAGTATCAGCAGGAGACTTTGAACAATCTCAGAGC
TGCCATGCACAACACCCAGATCCTCTGTGCTGTCATGCTCGATACCAAGG
GACCTGAGATTCGAACTGGTTTCCTTAAGGATGGAAAACCCATACAACTT
AAAGAAGGTCAGGAAATTACTGTATCTACTGATTATGACTTCAAGGGTAA
TGAAGAAATGATCACCATGAGCTACAAGAAGCTGCCTGTGGATGTGAAGC
CTGGAAATACCATCTTGTGTGCTGATGGCACCATTACCCTGACTGTCTTG
TCTTGTGATCCAAATC
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