FC930725

Overview
NameFC930725
Unique NameFC930725
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length766
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930725 vs. ExPASy Swiss-Prot
Match: CATB_PIG (Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.918e-20
Identity = 67/197 (34.01%), Postives = 83/197 (42.13%), Query Frame = 1
Query:  169 LQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDKSLK----LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT-------EECDPYFDSTGCSH------PGCEPAYPTPKCVRKC 702
            L D ++  +N+     W A  N  F N  +   K L G         LG P      +      LPKSFDAR  WP C TI  I DQG CGSCWAFGAVEA+SDR CI     +N+ +S                   +P  AW ++   G+V+         C PY     C H      P C     TPKC + C
Sbjct:   26 LSDELVNFINKQ-NTTWTAGHN--FYNVDLSYVKKLCGT-------FLGGPKLPQRAAFAADMILPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDMLTCCGDECGDGCNGGFPSGAWNFWTKKGLVSGGLYDSHVGCRPY-SIPPCEHHVNGSRPPCTGEGDTPKCSKIC 211          
BLAST of FC930725 vs. ExPASy Swiss-Prot
Match: CATB_CHICK (Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.521e-19
Identity = 64/180 (35.56%), Postives = 82/180 (45.56%), Query Frame = 1
Query:  169 LQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHD----KSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN--XXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKC 690
            L   ++  +N+    G +A  N  F N  +   K L G         LG P         + + LP +FD R  WP C TIS I DQG CGSCWAFGAVEA+SDR C+H    +S+ V+                   YP  AWRY+   G+V+      +D    SH GC  AY  P C
Sbjct:   26 LSSDLVNHINKLNTTG-RAGHN--FHNTDMSYVKKLCGT-------FLGGPKAPERVDFAEDMDLPDTFDTRKQWPNCPTISEIRDQGSCGSCWAFGAVEAISDRICVHTNAKVSVEVSAEDLLSCCGFECGMGCNGGYPSGAWRYWTERGLVS---GGLYD----SHVGCR-AYTIPPC 187          
BLAST of FC930725 vs. ExPASy Swiss-Prot
Match: CPR5_CAEEL (Cathepsin B-like cysteine proteinase 5 OS=Caenorhabditis elegans GN=cpr-5 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.860e-19
Identity = 55/142 (38.73%), Postives = 68/142 (47.89%), Query Frame = 1
Query:  349 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVN--XXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTE-------ECDPYFDS------TGCSHPGC-EPAYPTPKCVRKCVKKTSF 720
            +P  FDAR  WP C +I+ I DQ  CGSCWAF A EA+SDR CI  +  +N  LS                     YPI AW+++V HG+VT         C PY  +       G   P C E   PTPKCV  C  K ++
Sbjct:   82 IPDHFDARDQWPNCMSINNIRDQSDCGSCWAFAAAEAISDRTCIASNGAVNTLLSSEDLLSCCTGMFSCGNGCEGGYPIQAWKWWVKHGLVTGGSYETQFGCKPYSIAPCGETVNGVKWPACPEDTEPTPKCVDSCTSKNNY 223          
BLAST of FC930725 vs. ExPASy Swiss-Prot
Match: CPR4_CAEEL (Cathepsin B-like cysteine proteinase 4 OS=Caenorhabditis elegans GN=cpr-4 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.347e-18
Identity = 58/149 (38.93%), Postives = 71/149 (47.65%), Query Frame = 1
Query:  316 VPVKTHD-KSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTE-------ECDPYF-----DSTG-CSHPGC-EPAYPTPKCVRKCVKK 711
            V V  HD     +P +FDAR+ WP C +I+ I DQ  CGSCWAF A EA SDRFCI  +  +N  LS                   YPI+AW+Y V  G  T         C PY      ++ G  + P C +  Y TP CV KC  K
Sbjct:   69 VEVVKHDINEDTIPATFDARTQWPNCMSINNIRDQSDCGSCWAFAAAEAASDRFCIASNGAVNTLLSAE-DVLSCCSNCGYGCEGGYPINAWKYLVKSGFCTGGSYEAQFGCKPYSLAPCGETVGNVTWPSCPDDGYDTPACVNKCTNK 216          
BLAST of FC930725 vs. ExPASy Swiss-Prot
Match: CYSP2_HAECO (Cathepsin B-like cysteine proteinase 2 OS=Haemonchus contortus GN=AC-2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.064e-15
Identity = 47/139 (33.81%), Postives = 62/139 (44.60%), Query Frame = 1
Query:  334 DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT-------EECDPYFDSTGCSHPG-------CEPAYPTPKCVRKC 702
            D  + +P S+D R  W  C+T   I DQ +CGSCWA     A+SDR CI       +++S                   +PI AW+YF++ GVV+       + C PY     C H G       C    PTP C RKC
Sbjct:   82 DPEVDIPPSYDPRDVWKNCTTFY-IRDQANCGSCWAVSTAAAISDRICIASKAEKQVNISATDIMTCCRPQCGDGCEGGWPIEAWKYFIYDGVVSGGEYLTKDVCRPY-PIHPCGHHGNDTYYGECRGTAPTPPCKRKC 218          
BLAST of FC930725 vs. ExPASy Swiss-Prot
Match: CYSP1_HAECO (Cathepsin B-like cysteine proteinase 1 OS=Haemonchus contortus GN=AC-1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.064e-15
Identity = 47/139 (33.81%), Postives = 62/139 (44.60%), Query Frame = 1
Query:  334 DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT-------EECDPYFDSTGCSHPG-------CEPAYPTPKCVRKC 702
            D  + +P S+D R  W  C+T   I DQ +CGSCWA     A+SDR CI       +++S                   +PI AW+YF++ GVV+       + C PY     C H G       C    PTP C RKC
Sbjct:   82 DPEVDIPPSYDPRDVWKNCTTFY-IRDQANCGSCWAVSTAAAISDRICIASKAEKQVNISATDIMTCCRPQCGDGCEGGWPIEAWKYFIYDGVVSGGEYLTKDVCRPY-PIHPCGHHGNDTYYGECRGTAPTPPCKRKC 218          
BLAST of FC930725 vs. ExPASy Swiss-Prot
Match: CYSP1_OSTOS (Cathepsin B-like cysteine proteinase 1 OS=Ostertagia ostertagi GN=CP-1 PE=3 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 8.085e-13
Identity = 46/134 (34.33%), Postives = 61/134 (45.52%), Query Frame = 1
Query:  349 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI-HFGMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT-------EECDPYFDSTGCSHPGCEPAY-------PTPKCVRKCV 705
            +P+S+D R  W  CS++  I DQ +CGSCWA  +  A+SDR CI   G    L                    +PISA+R+    GVVT         C PY +   C H G E  Y        TP+C R+C+
Sbjct:   91 IPESYDPRIQWANCSSLFHIPDQANCGSCWAVSSAAAMSDRICIASKGAKQVLISAQDVVSCCTWCGDGCEGGWPISAFRFHADEGVVTGGDYNTKGSCRPY-EIHPCGHHGNETYYGECVGMADTPRCKRRCL 223          
BLAST of FC930725 vs. ExPASy Swiss-Prot
Match: CPR3_CAEEL (Cathepsin B-like cysteine proteinase 3 OS=Caenorhabditis elegans GN=cpr-3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.085e-13
Identity = 47/126 (37.30%), Postives = 54/126 (42.86%), Query Frame = 1
Query:  349 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT------EECDPYFDSTGCSHPGCEPAYPTPKCVRKC 702
            LP +FDAR  WP C+TI  I +Q  CGSCWAFGA E +SDR CI         +SV                  Y I A R++   G VT        C PY  S       C P   TP C   C
Sbjct:   92 LPDTFDAREKWPDCNTIKLIRNQATCGSCWAFGAAEVISDRVCIQSNGTQQPVISVEDILSCCGTTCGYGCKGGYSIEALRFWASSGAVTGGDYGGHGCMPY--SFAPCTKNC-PESTTPSCKTTC 214          
BLAST of FC930725 vs. ExPASy Swiss-Prot
Match: CPR1_CAEEL (Gut-specific cysteine proteinase OS=Caenorhabditis elegans GN=cpr-1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 8.085e-13
Identity = 45/126 (35.71%), Postives = 57/126 (45.24%), Query Frame = 1
Query:  349 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHF--GMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT------EECDPYFDSTGCSHPGCEPAYPTPKCVRKC 702
            +P +FD+R+ W +C +I  I DQ  CGSCWAFGA E +SDR CI         +S +                 YPI A R++   GVVT        C PY     C+   C P   TP C   C
Sbjct:   85 VPATFDSRTQWSECKSIKLIRDQATCGSCWAFGAAEMISDRTCIETKGAQQPIISPDDLLSCCGSSCGNGCEGGYPIQALRWWDSKGVVTGGDYHGAGCKPY-PIAPCTSGNC-PESKTPSCSMSC 208          
The following BLAST results are available for this feature:
BLAST of FC930725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
CATB_PIG8.918e-2034.01Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1[more]
CATB_CHICK1.521e-1935.56Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1[more]
CPR5_CAEEL9.860e-1938.73Cathepsin B-like cysteine proteinase 5 OS=Caenorha... [more]
CPR4_CAEEL8.347e-1838.93Cathepsin B-like cysteine proteinase 4 OS=Caenorha... [more]
CYSP2_HAECO5.064e-1533.81Cathepsin B-like cysteine proteinase 2 OS=Haemonch... [more]
CYSP1_HAECO5.064e-1533.81Cathepsin B-like cysteine proteinase 1 OS=Haemonch... [more]
CYSP1_OSTOS8.085e-1334.33Cathepsin B-like cysteine proteinase 1 OS=Ostertag... [more]
CPR3_CAEEL8.085e-1337.30Cathepsin B-like cysteine proteinase 3 OS=Caenorha... [more]
CPR1_CAEEL8.085e-1335.71Gut-specific cysteine proteinase OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank descriptionC34010F04EF PostHarvC1 Citrus clementina cDNA clone C34010F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930725 ID=FC930725; Name=FC930725; organism=Citrus clementina; type=EST; length=766bp
GAAGAAAAGTGCTCTCTCCCATTTCTCCTCTCTTCGTCCTTCCCGAGCCA
GTCATCCATGGCTTCATCTCACCTCTTTCTTACTACATGTTTGTTAATTC
TTGGCGTTATCTCCTCCCAGACTTTTGCAGAGGGAGTGGTTTCCAAGCTC
AAGCTTGATTCTCATATTCTCCAGGATTCAATCATCAAAGAAGTGAATGA
GAACCCTAAGGCTGGATGGAAAGCTGCCAGAAATCCTCAATTTTCCAATT
ACACTGTTGGGCAATTTAAGCACCTTCTTGGAGTCAAGCCAACACCTAAA
GGGCTGCTCTTGGGTGTCCCTGTTAAAACTCATGACAAATCCTTGAAGTT
GCCTAAAAGCTTTGATGCAAGGTCCGCTTGGCCACAATGCAGCACCATTA
GTAGGATCCTAGATCAGGGCCATTGTGGTTCTTGTTGGGCTTTTGGTGCT
GTTGAAGCGCTATCTGATCGTTTCTGCATCCATTTTGGCATGAACCTATC
TCTATCAGTTAATGATCTTTTAGCCTGCTGTGGCTTTTTGTGTGGAGATG
GTTGTGACGGGGGTTATCCAATTTCTGCATGGCGATACTTTGTCCACCAT
GGTGTTGTTACCGAAGAGTGTGATCCCTACTTTGATAGTACTGGCTGTTC
CCACCCTGGTTGTGAGCCGGCATATCCTACTCCAAAGTGTGTGAGGAAGT
GCGTCAAGAAAACCAGCTTTGGAGGAATTCAAGCACTACAGTATTAGTGC
ATATAGAATCAATTCT
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