FC930726

Overview
NameFC930726
Unique NameFC930726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10_MOUSE (60S ribosomal protein L10 OS=Mus musculus GN=Rpl10 PE=2 SV=3)

HSP 1 Score: 287.73 bits (735), Expect = 4.158e-77
Identity = 138/191 (72.25%), Postives = 156/191 (81.68%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSEDRIV 721
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+ +G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLI 191          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10_HUMAN (60S ribosomal protein L10 OS=Homo sapiens GN=RPL10 PE=1 SV=4)

HSP 1 Score: 287.73 bits (735), Expect = 4.158e-77
Identity = 138/191 (72.25%), Postives = 156/191 (81.68%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSEDRIV 721
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+ +G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLI 191          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10_CAEEL (60S ribosomal protein L10 OS=Caenorhabditis elegans GN=rpl-10 PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 5.430e-77
Identity = 138/190 (72.63%), Postives = 155/190 (81.58%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSEDRI 718
            MGRRPARCYR IKNKPYPKSRFCRGVPD KIRI+ +G K+  VD FP CVH++S E+E++SSEALEAARI  NKYM K  GKD FHLRVR HPFHV RINKMLSCAGADRLQTGMRGA+GKPQG  ARV IG +L S+R K+ N  HA EA RRAKFKFPGRQ I+ SRKWGFTK+ R DY R ++E R+
Sbjct:    1 MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHLSSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTKWDREDYERMRAEGRL 190          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10L_MACFA (60S ribosomal protein L10-like OS=Macaca fascicularis GN=RPL10L PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 2.695e-76
Identity = 136/191 (71.20%), Postives = 156/191 (81.68%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSEDRIV 721
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+ +G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  G+D FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    ++ R++
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAKKRLI 191          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10L_BOVIN (60S ribosomal protein L10-like OS=Bos taurus GN=RPL10L PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 2.695e-76
Identity = 137/191 (71.73%), Postives = 156/191 (81.68%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSEDRIV 721
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+ +G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    ++ R++
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDKVAKKRLI 191          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10L_MOUSE (60S ribosomal protein L10-like OS=Mus musculus GN=Rpl10l PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 3.520e-76
Identity = 136/181 (75.14%), Postives = 151/181 (83.43%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDY 691
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+ +G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEF 181          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10_DICDI (60S ribosomal protein L10 OS=Dictyostelium discoideum GN=rpl10 PE=3 SV=2)

HSP 1 Score: 283.878 bits (725), Expect = 6.004e-76
Identity = 130/191 (68.06%), Postives = 159/191 (83.25%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSEDRIV 721
            MGRRPARCYR  KNKPY KSR+CRGVPD KIRI+ +G KK   DEFP CVHL+S EKE +SSEA+EA RI+CNKY++K  GKD+FH+RVRVHP+HVLRINKMLSCAGADRLQTGMRGAFGKP GT ARV IGQ++ S+R +D+   +  EALRR+ +KFPGRQKI+VS+KWGFT ++R  Y + K++ R++
Sbjct:    1 MGRRPARCYRYCKNKPYIKSRYCRGVPDAKIRIFDLGRKKASTDEFPLCVHLISLEKEQLSSEAIEAGRISCNKYISKTGGKDSFHMRVRVHPWHVLRINKMLSCAGADRLQTGMRGAFGKPMGTVARVNIGQIIFSIRTRDNMLANVVEALRRSSYKFPGRQKIVVSKKWGFTAYNREAYQKLKADGRLM 191          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10_MACFA (60S ribosomal protein L10 OS=Macaca fascicularis GN=RPL10 PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.024e-75
Identity = 137/191 (71.73%), Postives = 155/191 (81.15%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSEDRIV 721
            MGRRPAR YR  KNKPYPKSRFCRGVPD KIRI+ +G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++
Sbjct:    1 MGRRPARRYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLI 191          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10L_HUMAN (60S ribosomal protein L10-like OS=Homo sapiens GN=RPL10L PE=1 SV=3)

HSP 1 Score: 278.87 bits (712), Expect = 1.931e-74
Identity = 134/181 (74.03%), Postives = 150/181 (82.87%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDY 691
            MGRRPARCYR  KNKPYPKSRFCRGVPD KIRI+ +G KK  VDEFP   H+VS E E +SSEALEAARI  NKYM K  G+D FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++
Sbjct:    1 MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQLSSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEF 181          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10_CHICK (60S ribosomal protein L10 (Fragment) OS=Gallus gallus GN=RPL10 PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 9.585e-74
Identity = 131/185 (70.81%), Postives = 150/185 (81.08%), Query Frame = 2
Query:  167 RCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSEDRIV 721
            RCYR  KNKPYPKSRFCRGVPDPKIRI+ +G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV +GQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+   +    ++ R++
Sbjct:    2 RCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHMGQVIMSIRTKAQNKEHVVEALRRAKFKFPGRQKIHISKKWGFTKFNADAFEEMVAQKRLI 186          
The following BLAST results are available for this feature:
BLAST of FC930726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_MOUSE4.158e-7772.2560S ribosomal protein L10 OS=Mus musculus GN=Rpl10... [more]
RL10_HUMAN4.158e-7772.2560S ribosomal protein L10 OS=Homo sapiens GN=RPL10... [more]
RL10_CAEEL5.430e-7772.6360S ribosomal protein L10 OS=Caenorhabditis elegan... [more]
RL10L_MACFA2.695e-7671.2060S ribosomal protein L10-like OS=Macaca fascicula... [more]
RL10L_BOVIN2.695e-7671.7360S ribosomal protein L10-like OS=Bos taurus GN=RP... [more]
RL10L_MOUSE3.520e-7675.1460S ribosomal protein L10-like OS=Mus musculus GN=... [more]
RL10_DICDI6.004e-7668.0660S ribosomal protein L10 OS=Dictyostelium discoid... [more]
RL10_MACFA1.024e-7571.7360S ribosomal protein L10 OS=Macaca fascicularis G... [more]
RL10L_HUMAN1.931e-7474.0360S ribosomal protein L10-like OS=Homo sapiens GN=... [more]
RL10_CHICK9.585e-7470.8160S ribosomal protein L10 (Fragment) OS=Gallus gal... [more]

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Properties
Property NameValue
Genbank descriptionC34010F05EF PostHarvC1 Citrus clementina cDNA clone C34010F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930726 ID=FC930726; Name=FC930726; organism=Citrus clementina; type=EST; length=721bp
GTTGGACCAAAATCACGAAACATGACGGAAGCGCGGGCGTATTAGGGTTT
GGGAAACACACCCACATATATACCAAAGCCATTTCTTTTTTCTCCCACTT
TTCTTGGGTTTCTGGTTTAGTTGCTGAATACCTACCAGGGCTTTCGCCAT
GGGAAGAAGACCTGCTAGGTGTTATCGCCAGATAAAAAATAAGCCGTATC
CGAAATCACGCTTTTGTCGTGGTGTGCCTGATCCCAAGATCAGGATCTAT
GGTGTTGGAATGAAGAAGAAAGGGGTTGATGAATTCCCTTTCTGTGTGCA
CTTGGTGTCTTGGGAAAAGGAGAACGTATCTAGTGAAGCTCTTGAGGCTG
CTCGAATTGCTTGCAACAAATATATGGCCAAGTTTGCCGGGAAAGATGCT
TTCCATTTGCGAGTCCGTGTTCACCCATTCCATGTCTTGCGTATCAACAA
AATGCTTTCATGTGCTGGAGCTGATAGGCTTCAAACTGGTATGAGGGGTG
CTTTCGGTAAACCACAGGGCACTTGTGCTAGAGTTGCCATTGGACAGGTC
CTCCTGTCAGTTCGCTGCAAGGATAGCAATAGTCTTCATGCTCAAGAGGC
TCTTCGTCGTGCAAAGTTCAAGTTTCCTGGTCGCCAAAAAATCATTGTCA
GCAGAAAGTGGGGTTTCACCAAGTTTAGCCGCAGTGATTATTTGAGGTTC
AAGTCAGAAGACCGTATTGTG
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