FC930726

Overview
NameFC930726
Unique NameFC930726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10B_SCHPO (60S ribosomal protein L10-B OS=Schizosaccharomyces pombe GN=rpl10b PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 4.757e-73
Identity = 130/191 (68.06%), Postives = 155/191 (81.15%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSEDRIV 721
            M RRPARCYR  KNKPYPKSR+ R VPD KIRI+ +G K+ GVDEFP C+HLVS E E ++SEALEAARI  NKY+ K  GKD+FHLRVR HPFHV+RINKMLSCAGADRLQTGMR AFGKP G  ARV IGQVL+SVR KDS+   A EALRR ++KFPG+Q+IIVS+KWGF++++R +Y+  +S   I+
Sbjct:    1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEII 191          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10A_SCHPO (60S ribosomal protein L10-A OS=Schizosaccharomyces pombe GN=rpl10a PE=2 SV=2)

HSP 1 Score: 273.863 bits (699), Expect = 6.213e-73
Identity = 129/191 (67.54%), Postives = 155/191 (81.15%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSEDRIV 721
            M RRPARCYR  KNKPYPKSR+ R VPD KIRI+ +G K+ GVDEFP C+HLVS E E ++SEALEAARI  NKY+ K  GKD+FHLRVR HPFHV+RINKMLSCAGADRLQTGMR AFGKP G  ARV IGQ+L+SVR KDS+   A EALRR ++KFPG+Q+IIVS+KWGF++++R +Y+  +S   I+
Sbjct:    1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEII 191          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10_YEAST (60S ribosomal protein L10 OS=Saccharomyces cerevisiae GN=RPL10 PE=1 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 8.971e-72
Identity = 132/183 (72.13%), Postives = 147/183 (80.33%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLR 697
            M RRPARCYR  KNKPYPKSR+ R VPD KIRIY +G KK  VDEFP CVHLVS E E +SSEALEAARI  NKYM   +G+DAFHLRVRVHPFHVLRINKMLSCAGADRLQ GMRGA+GKP G  ARV IGQ++ SVR KDSN     E LRRA++KFPG+QKII+S+KWGFT   R +YL+
Sbjct:    1 MARRPARCYRYQKNKPYPKSRYNRAVPDSKIRIYDLGKKKATVDEFPLCVHLVSNELEQLSSEALEAARICANKYMTTVSGRDAFHLRVRVHPFHVLRINKMLSCAGADRLQQGMRGAWGKPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGFTNLDRPEYLK 183          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10_EUGGR (60S ribosomal protein L10 OS=Euglena gracilis GN=RPL10 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.795e-65
Identity = 119/189 (62.96%), Postives = 140/189 (74.07%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSEDR 715
            MGRRPA+CYR  KNK YPKSR+CRGVP+ KIRIY  GM+K   D FP   HL+S E+E + SEALEAARI  NKYM K AGK+A+H+RVRVHPFHV RINKMLSCAGADRLQ GMRGAFGKP G  ARV IGQ L+S+R K  +      AL+RA +KF GRQ I  S  WGFT+    +Y+++K E +
Sbjct:    1 MGRRPAKCYRYCKNKAYPKSRYCRGVPEAKIRIYDCGMRKLNADTFPLTYHLISMEREQIGSEALEAARINANKYMIKNAGKEAYHIRVRVHPFHVCRINKMLSCAGADRLQQGMRGAFGKPNGLAARVRIGQPLMSIRVKPQHEAVVVAALKRASYKFAGRQVIAKSTMWGFTEIRSENYVKWKEEGK 189          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10_ENCCU (60S ribosomal protein L10 OS=Encephalitozoon cuniculi GN=RPL10 PE=1 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 8.992e-64
Identity = 122/191 (63.87%), Postives = 143/191 (74.87%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSEDRIV 721
            MGRRP RCYR +  K YPKSRF RGVPD KI+I+ +G +K GV EFP  V+ +S E+EN+S+EALEAARI  NKYM K AGKD FHLR+RV+PFHVLRINKMLSCAGADRLQTGMRG+FGKP G  ARV   Q +LS+R K+S    A EALRRAK KFPG QKI VS K+GFT     ++ +     RI+
Sbjct:    1 MGRRPGRCYRYLSKKAYPKSRFNRGVPDSKIQIFDLGRRKAGVLEFPLLVNCISNERENLSAEALEAARICANKYMVKHAGKDNFHLRIRVYPFHVLRINKMLSCAGADRLQTGMRGSFGKPYGRAARVVFNQPILSIRTKESFRDAAVEALRRAKNKFPGHQKIQVSSKFGFTNMFSDEFNKLNESGRII 191          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10_TOBAC (60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.842e-55
Identity = 105/120 (87.50%), Postives = 110/120 (91.67%), Query Frame = 2
Query:  362 CNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRSDYLRFKSEDRIV 721
            C    A  AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVRCKD N+ HAQEALRRAKFKFP RQKIIVSRKWGFTKFSR+DYL++KSE+RIV
Sbjct:    1 CGGCEAGSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNANHAQEALRRAKFKFPRRQKIIVSRKWGFTKFSRTDYLKYKSENRIV 120          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10_METKA (50S ribosomal protein L10e OS=Methanopyrus kandleri GN=rpl10e PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.074e-36
Identity = 81/169 (47.93%), Postives = 109/169 (64.50%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR 655
            M  RPAR YR+ K   Y +  + +GVPDPKI+ + +G       +F   V LV+ E+  V+  ALEAAR+A N+Y+ K  G+  +HL++RV+P HVLR N + + AGADR+Q GMR AFGKP GT ARV  GQ +++VR    N  HA+EALRRA  KFP    I+V +
Sbjct:    1 MVNRPARIYREWKGPAYTRREYIKGVPDPKIQQFDMG---NPAGDFDVEVSLVARERAQVTHNALEAARVAANRYLTKTVGRQNYHLKIRVYPHHVLRENPLATGAGADRVQEGMRLAFGKPIGTAARVREGQRVVTVRIDPENFEHAKEALRRAGMKFPFPFTIVVDK 166          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10_AERPE (50S ribosomal protein L10e OS=Aeropyrum pernix GN=rpl10e PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.812e-33
Identity = 76/167 (45.51%), Postives = 102/167 (61.08%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIV 649
            M  RPARCY      PY +  +  GVP PKI  + +G ++  ++++     LV  E   +   ALEAARIA NKY+A   G   F+ R+RV+P HV+R NKM++ AGADRLQ GMR AFGKP GT ARV  G V+L V  +  +  + +EALRR   KFP   +I++
Sbjct:    1 MPLRPARCYTHFSGPPYTRREYIHGVPPPKITRFEMGNREM-MEKWEIKGELVMLEAGQIRHNALEAARIAVNKYLATTIGDKNFYFRIRVYPHHVIRENKMMAFAGADRLQDGMRQAFGKPVGTAARVYPGTVVLEVWARKGDEENVKEALRRGASKFPLPSRIVI 166          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10_STAMF (50S ribosomal protein L10e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.074e-32
Identity = 74/166 (44.58%), Postives = 99/166 (59.64%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKII 646
            M  RPARCY      PY +  +  GVP PKI  + +G       ++ +   LV  E   +   ALEAAR+  NKY++   G   + L++RV+P HVLR NKM++ AGADRLQ GMR AFGKP GT ARV  G +++ VR +  +  HA+EALRRA  K P   +I+
Sbjct:    1 MPLRPARCYTHFSGPPYTRREYIPGVPQPKIVKFEMGNVH---GDYDYRAELVMIEAGQIRHNALEAARVMANKYLSSTVGDQNYFLKIRVYPHHVLRENKMMAFAGADRLQDGMRQAFGKPIGTAARVYPGTIVMEVRVRKEHVEHAKEALRRAASKLPLPARIV 163          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10_HYPBU (50S ribosomal protein L10e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.949e-32
Identity = 77/173 (44.51%), Postives = 107/173 (61.85%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNK-----PYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRR--AKFKFPGRQKII 646
            M ++PARCY + ++K     PY +  +  GVP PKI+ + +G       ++ + V +   E+  +   ALEAAR+A +KY++   G   +  RVRV+P HVLR NKM++ AGADRLQ GMR AFGKP GT ARV  GQ +L VR K  +  HA+EALRR  +K   P R ++I
Sbjct:    1 MPQKPARCYTKRRSKAFSGPPYTRKEYIHGVPPPKIQKFVMGNPH---GDYDYIVEVYVTERGQIRHNALEAARVAVHKYLSTTIGDQNYFFRVRVYPHHVLRENKMMAFAGADRLQEGMRQAFGKPVGTAARVYPGQAVLEVRVKKEHLDHAKEALRRGASKLPLPSRIRVI 170          
The following BLAST results are available for this feature:
BLAST of FC930726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10B_SCHPO4.757e-7368.0660S ribosomal protein L10-B OS=Schizosaccharomyces... [more]
RL10A_SCHPO6.213e-7367.5460S ribosomal protein L10-A OS=Schizosaccharomyces... [more]
RL10_YEAST8.971e-7272.1360S ribosomal protein L10 OS=Saccharomyces cerevis... [more]
RL10_EUGGR2.795e-6562.9660S ribosomal protein L10 OS=Euglena gracilis GN=R... [more]
RL10_ENCCU8.992e-6463.8760S ribosomal protein L10 OS=Encephalitozoon cunic... [more]
RL10_TOBAC5.842e-5587.5060S ribosomal protein L10 (Fragment) OS=Nicotiana ... [more]
RL10_METKA6.074e-3647.9350S ribosomal protein L10e OS=Methanopyrus kandler... [more]
RL10_AERPE4.812e-3345.5150S ribosomal protein L10e OS=Aeropyrum pernix GN=... [more]
RL10_STAMF4.074e-3244.5850S ribosomal protein L10e OS=Staphylothermus mari... [more]
RL10_HYPBU6.949e-3244.5150S ribosomal protein L10e OS=Hyperthermus butylic... [more]

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Properties
Property NameValue
Genbank descriptionC34010F05EF PostHarvC1 Citrus clementina cDNA clone C34010F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930726 ID=FC930726; Name=FC930726; organism=Citrus clementina; type=EST; length=721bp
GTTGGACCAAAATCACGAAACATGACGGAAGCGCGGGCGTATTAGGGTTT
GGGAAACACACCCACATATATACCAAAGCCATTTCTTTTTTCTCCCACTT
TTCTTGGGTTTCTGGTTTAGTTGCTGAATACCTACCAGGGCTTTCGCCAT
GGGAAGAAGACCTGCTAGGTGTTATCGCCAGATAAAAAATAAGCCGTATC
CGAAATCACGCTTTTGTCGTGGTGTGCCTGATCCCAAGATCAGGATCTAT
GGTGTTGGAATGAAGAAGAAAGGGGTTGATGAATTCCCTTTCTGTGTGCA
CTTGGTGTCTTGGGAAAAGGAGAACGTATCTAGTGAAGCTCTTGAGGCTG
CTCGAATTGCTTGCAACAAATATATGGCCAAGTTTGCCGGGAAAGATGCT
TTCCATTTGCGAGTCCGTGTTCACCCATTCCATGTCTTGCGTATCAACAA
AATGCTTTCATGTGCTGGAGCTGATAGGCTTCAAACTGGTATGAGGGGTG
CTTTCGGTAAACCACAGGGCACTTGTGCTAGAGTTGCCATTGGACAGGTC
CTCCTGTCAGTTCGCTGCAAGGATAGCAATAGTCTTCATGCTCAAGAGGC
TCTTCGTCGTGCAAAGTTCAAGTTTCCTGGTCGCCAAAAAATCATTGTCA
GCAGAAAGTGGGGTTTCACCAAGTTTAGCCGCAGTGATTATTTGAGGTTC
AAGTCAGAAGACCGTATTGTG
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