FC930726

Overview
NameFC930726
Unique NameFC930726
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10_PYRCJ (50S ribosomal protein L10e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.022e-31
Identity = 76/171 (44.44%), Postives = 99/171 (57.89%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDE-FPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRK 658
            M  RPARCYR+IK  PY +  +  G P  +I  + +G         F     LV+ E+  +  +ALEAAR   +KY+ K+ G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQV+  V  K  +  H +EALRRA  K P   +I+V  K
Sbjct:    1 MPARPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARAAFTMVAKLVAEERGQIRMQALEAARQISSKYLTKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVIFYVEFKPEHLAHVKEALRRAASKLPIPTRIVVEPK 171          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10_META3 (50S ribosomal protein L10e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.022e-31
Identity = 74/169 (43.79%), Postives = 101/169 (59.76%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR 655
            M  RP++CYR+I    Y + ++ R VP PK+  Y  G   KG D FP  VHLV  +   +   ALE+ARI  NKY     G+  +  ++RV+P  VLR NKM S AGADR+  GMR +FGK  GT ARV  GQ ++++     N +HA+EALRR   K P + KI++ +
Sbjct:    1 MALRPSKCYREINKPAYTRKKYIRAVPQPKVVHYVNG--NKGGD-FPVEVHLVVKDDIQIRHNALESARIVGNKYTQNKCGRLGYKFQIRVYPHQVLRENKMASGAGADRISDGMRLSFGKAVGTAARVRKGQKIITISTTPENVIHAKEALRRCNMKMPVKCKIVIGK 166          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10_METJA (50S ribosomal protein L10e OS=Methanocaldococcus jannaschii GN=rpl10e PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.683e-31
Identity = 71/166 (42.77%), Postives = 99/166 (59.64%), Query Frame = 2
Query:  158 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR 655
            RP RCYR +   PY +  + +GVP PK+  + +G       EFP  V+LV+     +   ALEAAR+A NKY+ K  G+  +  ++RV+P  +LR +KM + AGADR+  GMR AFGKP GT ARV  GQ +L+V         A+EALRRA  K P   +I++ +
Sbjct:    5 RPNRCYRDVDKPPYTRKEYVKGVPQPKVVHFIMGNLSA---EFPVKVNLVATRPIQIRHNALEAARVAANKYLTKMCGRMGYKFQIRVYPHQILREHKMATGAGADRISDGMRLAFGKPIGTAARVKEGQAILTVWVNPDKFPAAKEALRRAAMKLPVPCRIVIEQ 167          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10_THENV (50S ribosomal protein L10e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.003e-30
Identity = 72/168 (42.86%), Postives = 96/168 (57.14%), Query Frame = 2
Query:  158 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDE-FPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRK 658
            RPARCY++IK  PY +  +  G P  +I  + +G         FP    LV  E+  +  +ALEAAR    KY++K+ G   ++LR+   P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQV+     K  +  H +EALRRA  K P   +I++  K
Sbjct:    4 RPARCYKRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARAAFPLVAKLVVQERGQIRMQALEAARQMAYKYLSKYVGDANYYLRLEAVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEAGQVIFYAEFKPEHVAHMKEALRRASTKLPLPTRIVIEAK 171          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10_PYRAR (50S ribosomal protein L10e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.003e-30
Identity = 72/168 (42.86%), Postives = 96/168 (57.14%), Query Frame = 2
Query:  158 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDE-FPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRK 658
            RPARCYR+IK  PY +  +  G P  +I  + +G         FP    L+  E+  +  +ALEAAR   +KY+ K+ G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQ+L     K  +  H +EA RRA  K P   +I++  K
Sbjct:    4 RPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARATFPMVAKLIVEERGQIRMQALEAARQMASKYLTKYVGDANYYLRLNVIPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQILFYAEFKPEHLAHIKEAFRRAASKLPLPTRIVIEPK 171          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10_ARCFU (50S ribosomal protein L10e OS=Archaeoglobus fulgidus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.813e-30
Identity = 70/169 (41.42%), Postives = 105/169 (62.13%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR 655
            M R+PAR +R+++ +PY ++ +  G P  ++R++ +G K     +FP  + LV+ E   +   ALEAAR+  NKY+++ AG   + L++R+ P H+LR +KM   AGADR+  GMR AFGKP G  ARV  G  ++SV  K  +   A+EALRRA  K P   KI+V +
Sbjct:    1 MARKPARMWRRLE-RPYTRTEYIDGAPGTRVRMFDMGNKSA---DFPVMLTLVAKEAVQIRENALEAARVVANKYVSRRAGASNYKLKLRIFPHHILREHKMAVGAGADRISQGMRAAFGKPVGRAARVKPGTKIMSVWVKPEHFEIAKEALRRAAMKMPTPTKIVVEK 165          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10_PYRIL (50S ribosomal protein L10e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.980e-30
Identity = 72/168 (42.86%), Postives = 97/168 (57.74%), Query Frame = 2
Query:  158 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDE-FPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRK 658
            RPARCYR+IK  PY +  +  G P  +I  + +G+        F     LV  E+  +  +ALEAAR    KY++K+ G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQV+     +  +  H +EALRRA  K P   +I++  K
Sbjct:    4 RPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMGVTSAAARAAFSMVAKLVVEERGQIRMQALEAARQMAYKYLSKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVIFYAEFRPEHIAHIKEALRRAASKLPLPTRIVIETK 171          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10_PYRAE (50S ribosomal protein L10e OS=Pyrobaculum aerophilum GN=rpl10e PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.980e-30
Identity = 73/168 (43.45%), Postives = 96/168 (57.14%), Query Frame = 2
Query:  158 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGV-DEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSRK 658
            RPARCY++IK  PY +  +  G P  +I  + +G         F     LV  E+  +  +ALEAAR   +KY+ K+ G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQVL     K  +  H +EALRRA  K P   +I++  K
Sbjct:    4 RPARCYKRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARTAFTMTAKLVVEERGQIRMQALEAARQMASKYLTKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVLFYAEFKPEHLPHIKEALRRAASKLPLPTRIVIEPK 171          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10_METMP (50S ribosomal protein L10e OS=Methanococcus maripaludis GN=rpl10e PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.191e-29
Identity = 70/169 (41.42%), Postives = 97/169 (57.40%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR 655
            M  RPARCYR I+ + Y +  + R VP PK+  Y +G       EFP  V LVS     +   ALE++RIA NKY+    G+  +   +RV+P  +LR NKM + AGADR+  GMR +FGK  GT A+V  GQ ++++         A+EALRR   K P   KI+V++
Sbjct:    1 MALRPARCYRTIERRSYTRKEYVRAVPQPKVVHYVMGNPSA---EFPVQVQLVSKSDILIRHNALESSRIAGNKYILSECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPEKFYAAKEALRRCSMKLPTACKIVVTK 166          
BLAST of FC930726 vs. ExPASy Swiss-Prot
Match: RL10_THEAC (50S ribosomal protein L10e OS=Thermoplasma acidophilum GN=rpl10e PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.602e-28
Identity = 69/169 (40.83%), Postives = 103/169 (60.95%), Query Frame = 2
Query:  149 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYGVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR 655
            M  +PAR Y +I    Y +  F  GVP PKI  +  G +KK   +FP  + LV+ E   +   ALEAAR++ N+ M + AG D F+L+V  +P HVLR +KM + AGADR+ +GMR AFG+P GT ARV    V++  R  ++++   + ALR+A  K P   K+++++
Sbjct:    1 MVTKPARMYSRITGPAYTRKEFMGGVPYPKITTFVQGNQKK---DFPIEMRLVAEEPCQIRHTALEAARVSVNRRMTEAAGLDYFYLKVVPYPHHVLREHKMATGAGADRISSGMRAAFGRPVGTAARVYPDDVIMIARTDEAHAKELKTALRKAAIKLPTPCKVVITK 166          
The following BLAST results are available for this feature:
BLAST of FC930726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_PYRCJ2.022e-3144.4450S ribosomal protein L10e OS=Pyrobaculum calidifo... [more]
RL10_META32.022e-3143.7950S ribosomal protein L10e OS=Methanococcus aeolic... [more]
RL10_METJA7.683e-3142.7750S ribosomal protein L10e OS=Methanocaldococcus j... [more]
RL10_THENV1.003e-3042.8650S ribosomal protein L10e OS=Thermoproteus neutro... [more]
RL10_PYRAR1.003e-3042.8650S ribosomal protein L10e OS=Pyrobaculum arsenati... [more]
RL10_ARCFU3.813e-3041.4250S ribosomal protein L10e OS=Archaeoglobus fulgid... [more]
RL10_PYRIL4.980e-3042.8650S ribosomal protein L10e OS=Pyrobaculum islandic... [more]
RL10_PYRAE4.980e-3043.4550S ribosomal protein L10e OS=Pyrobaculum aerophil... [more]
RL10_METMP7.191e-2941.4250S ribosomal protein L10e OS=Methanococcus maripa... [more]
RL10_THEAC1.602e-2840.8350S ribosomal protein L10e OS=Thermoplasma acidoph... [more]

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Properties
Property NameValue
Genbank descriptionC34010F05EF PostHarvC1 Citrus clementina cDNA clone C34010F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930726 ID=FC930726; Name=FC930726; organism=Citrus clementina; type=EST; length=721bp
GTTGGACCAAAATCACGAAACATGACGGAAGCGCGGGCGTATTAGGGTTT
GGGAAACACACCCACATATATACCAAAGCCATTTCTTTTTTCTCCCACTT
TTCTTGGGTTTCTGGTTTAGTTGCTGAATACCTACCAGGGCTTTCGCCAT
GGGAAGAAGACCTGCTAGGTGTTATCGCCAGATAAAAAATAAGCCGTATC
CGAAATCACGCTTTTGTCGTGGTGTGCCTGATCCCAAGATCAGGATCTAT
GGTGTTGGAATGAAGAAGAAAGGGGTTGATGAATTCCCTTTCTGTGTGCA
CTTGGTGTCTTGGGAAAAGGAGAACGTATCTAGTGAAGCTCTTGAGGCTG
CTCGAATTGCTTGCAACAAATATATGGCCAAGTTTGCCGGGAAAGATGCT
TTCCATTTGCGAGTCCGTGTTCACCCATTCCATGTCTTGCGTATCAACAA
AATGCTTTCATGTGCTGGAGCTGATAGGCTTCAAACTGGTATGAGGGGTG
CTTTCGGTAAACCACAGGGCACTTGTGCTAGAGTTGCCATTGGACAGGTC
CTCCTGTCAGTTCGCTGCAAGGATAGCAATAGTCTTCATGCTCAAGAGGC
TCTTCGTCGTGCAAAGTTCAAGTTTCCTGGTCGCCAAAAAATCATTGTCA
GCAGAAAGTGGGGTTTCACCAAGTTTAGCCGCAGTGATTATTTGAGGTTC
AAGTCAGAAGACCGTATTGTG
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