FC930734

Overview
NameFC930734
Unique NameFC930734
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930734 vs. ExPASy Swiss-Prot
Match: PLET1_ARATH (AP2-like ethylene-responsive transcription factor PLT1 OS=Arabidopsis thaliana GN=PLT1 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.943e-30
Identity = 73/178 (41.01%), Postives = 103/178 (57.87%), Query Frame = 2
Query:    2 TFYRRTGRWESHIWDS----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQESLWVYIWKDSRNVV**QMSNLTKEEFVHVLRRQSAGFPRGSSKYRGVTLH-TCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLY 502
            T +R TGR+E+H+WD+          G+QVYLGG+D             +K+ G     NF I +YE ++++                  M ++T++EFV  +RR+S+GF RG+S YRGVT H   GRW+AR+G+  G K +YLG F TE EAA AYD AA+K  G +AVTNF+ + Y
Sbjct:  186 TRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARSYDLAALKYWGPSTTTNFPITNYEKEVEE------------------MKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFEINRY 345          
BLAST of FC930734 vs. ExPASy Swiss-Prot
Match: AP2L1_ARATH (AP2-like ethylene-responsive transcription factor At1g16060 OS=Arabidopsis thaliana GN=At1g16060 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.943e-30
Identity = 74/178 (41.57%), Postives = 103/178 (57.87%), Query Frame = 2
Query:    2 TFYRRTGRWESHIWDS----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQESLWVYIWKDSRNVV**QMSNLTKEEFVHVLRRQSAGFPRGSSKYRGVTLHTC-GRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLY 502
            T +R TGR+E+H+WD           G+QVYLG +D             +K+ G +  +NF + +YE+D+K+                  M + +KEE++  LRR+S+GF RG SKYRGV  H   GRWEAR+G+  G KY+YLG + T+ EAA AYD AA++  G +AVTNFD S Y
Sbjct:   63 TRHRWTGRYEAHLWDKNSWNETQTKKGRQVYLGAYDEEDAAARAYDLAALKYWGRDTILNFPLCNYEEDIKE------------------MESQSKEEYIGSLRRKSSGFSRGVSKYRGVAKHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAIAYDIAAIEYRGLNAVTNFDISRY 222          
BLAST of FC930734 vs. ExPASy Swiss-Prot
Match: BBM_ARATH (AP2-like ethylene-responsive transcription factor BBM OS=Arabidopsis thaliana GN=BBM PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.118e-29
Identity = 72/178 (40.45%), Postives = 102/178 (57.30%), Query Frame = 2
Query:    2 TFYRRTGRWESHIWDS----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQESLWVYIWKDSRNVV**QMSNLTKEEFVHVLRRQSAGFPRGSSKYRGVTLH-TCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLY 502
            T +R TGR+E+H+WD+          G+QVYLGG+D             +K+ G     NF + +YE ++++                  M ++T++E+V  LRR+S+GF RG+S YRGVT H   GRW+AR+G+  G K +YLG F T+ EAA AYD AA+K  G  AVTNFD + Y
Sbjct:  215 TRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPLSEYEKEVEE------------------MKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLSAVTNFDMNRY 374          
BLAST of FC930734 vs. ExPASy Swiss-Prot
Match: BBM2_BRANA (AP2-like ethylene-responsive transcription factor BBM2 OS=Brassica napus GN=BBM2 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.460e-29
Identity = 72/178 (40.45%), Postives = 102/178 (57.30%), Query Frame = 2
Query:    2 TFYRRTGRWESHIWDS----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQESLWVYIWKDSRNVV**QMSNLTKEEFVHVLRRQSAGFPRGSSKYRGVTLH-TCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLY 502
            T +R TGR+E+H+WD+          G+QVYLGG+D             +K+ G     NF + +YE ++++                  M ++T++E+V  LRR+S+GF RG+S YRGVT H   GRW+AR+G+  G K +YLG F T+ EAA AYD AA+K  G  AVTNFD + Y
Sbjct:  215 TRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPMSEYEKEIEE------------------MKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLTAVTNFDMNRY 374          
BLAST of FC930734 vs. ExPASy Swiss-Prot
Match: BBM1_BRANA (AP2-like ethylene-responsive transcription factor BBM1 OS=Brassica napus GN=BBM1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.907e-29
Identity = 72/178 (40.45%), Postives = 102/178 (57.30%), Query Frame = 2
Query:    2 TFYRRTGRWESHIWDS----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQESLWVYIWKDSRNVV**QMSNLTKEEFVHVLRRQSAGFPRGSSKYRGVTLH-TCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLY 502
            T +R TGR+E+H+WD+          G+QVYLGG+D             +K+ G     NF + +YE ++++                  M ++T++E+V  LRR+S+GF RG+S YRGVT H   GRW+AR+G+  G K +YLG F T+ EAA AYD AA+K  G  AVTNFD + Y
Sbjct:  215 TRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPMSEYEKEVEE------------------MKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLTAVTNFDMNRY 374          
BLAST of FC930734 vs. ExPASy Swiss-Prot
Match: SMZ_ARATH (AP2-like ethylene-responsive transcription factor SMZ OS=Arabidopsis thaliana GN=SMZ PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.367e-27
Identity = 70/154 (45.45%), Postives = 84/154 (54.55%), Query Frame = 2
Query:    2 TFYRRTGRWESHIWDSGKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQESLWVYIWKDSRNVV**QMSNLTKEEFVHVLRRQSAGFPRGSSKYRGVTLHTCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCN 463
            TFYRRTGRWESHIWD GKQVYLGGFDT            IKFRG +ADINF ++DY  D+                   +M NL K EFV  LRR+SA F RGSSKY+G+ L  C ++         K +  + LF       R +D AA+K N
Sbjct:  127 TFYRRTGRWESHIWDCGKQVYLGGFDTAYAAARAYDRAAIKFRGLDADINFVVDDYRHDID------------------KMKNLNKVEFVQTLRRESASFGRGSSKYKGLALQKCTQF---------KTHDQIHLFQN-----RGWDAAAIKYN 248          
BLAST of FC930734 vs. ExPASy Swiss-Prot
Match: AIL6_ARATH (AP2-like ethylene-responsive transcription factor AIL6 OS=Arabidopsis thaliana GN=AIL6 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.511e-26
Identity = 70/178 (39.33%), Postives = 100/178 (56.18%), Query Frame = 2
Query:    2 TFYRRTGRWESHIWDSG-------KQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQESLWVYIWKDSRNVV**QMSNLTKEEFVHVLRRQSAGFPRGSSKYRGVTLH-TCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLYQDE 511
            T +R TGR+E+H+WD+        ++   GG+D             +K+  A A  NF I +Y  ++++                  M ++TK+EF+  LRR+S+GF RG+S YRGVT H   GRW+AR+G+  G K +YLG F TE EAA AYD AA+K  G +AVTNF+ + Y  E
Sbjct:  273 TRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEDKAARAYDLAALKYWNATATTNFPITNYSKEVEE------------------MKHMTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGINAVTNFEMNRYDVE 432          
BLAST of FC930734 vs. ExPASy Swiss-Prot
Match: AP2L3_ARATH (AP2-like ethylene-responsive transcription factor At1g79700 OS=Arabidopsis thaliana GN=At1g79700 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.375e-24
Identity = 68/178 (38.20%), Postives = 95/178 (53.37%), Query Frame = 2
Query:    2 TFYRRTGRWESHIWDS----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQESLWVYIWKDSRNVV**QMSNLTKEEFVHVLRRQSAGFPRGSSKYRGVTL-HTCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDRAAVKCNGKDAVTNFDPSLY 502
            T +R TGR+E+H+WD           G+QVYLG +D             +K+ G +  +NF +  Y++D+K+                  M   +KEE++  LRR+S+GF RG SKYRGV   H  GRWEAR+G+          +F T+ EAA AYD AA++  G +AVTNFD S Y
Sbjct:   57 TRHRWTGRYEAHLWDKNSWNDTQTKKGRQVYLGAYDEEEAAARAYDLAALKYWGRDTLLNFPLPSYDEDVKE------------------MEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGR----------VFATQEEAAIAYDIAAIEYRGLNAVTNFDVSRY 206          
BLAST of FC930734 vs. ExPASy Swiss-Prot
Match: SNZ_ARATH (AP2-like ethylene-responsive transcription factor SNZ OS=Arabidopsis thaliana GN=SNZ PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.021e-24
Identity = 56/108 (51.85%), Postives = 66/108 (61.11%), Query Frame = 2
Query:    2 TFYRRTGRWESHIWDSGKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQESLWVYIWKDSRNVV**QMSNLTKEEFVHVLRRQSAGFPRGSSKYR 325
            TFYRRTGRWESHIWD GKQVYLGGFDT            I+FRG +ADINF ++DY+ D++                  +M NL+KEEFV  LRR SA   RG SKY+
Sbjct:  113 TFYRRTGRWESHIWDCGKQVYLGGFDTAYTAARAYDRAAIRFRGLQADINFIVDDYKQDIE------------------KMKNLSKEEFVQSLRRASASLARGGSKYK 202          
BLAST of FC930734 vs. ExPASy Swiss-Prot
Match: AP2L4_ARATH (AP2-like ethylene-responsive transcription factor At2g41710 OS=Arabidopsis thaliana GN=At2g41710 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.622e-12
Identity = 48/145 (33.10%), Postives = 69/145 (47.59%), Query Frame = 2
Query:    2 TFYRRTGRWESHIWDS----------GKQVYLGGFDTXXXXXXXXXXXXIKFRGAEADINFSIEDYEDDLKQESLWVYIWKDSRNVV**QMSNLTKEEFVHVLR-----RQSAGFPRGSSKYRGVTLHTCGRWEARMGQFLGKKY 391
            T +R TGR+E+H+WD           GKQVYLG +D             +K+ G    INF + DY  DL+                  +M NL++EE++  LR     R+S+GF RG +KYRG+      RW+A   +  G +Y
Sbjct:   75 TRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLE------------------EMQNLSREEYLASLRRYPFGRKSSGFSRGIAKYRGLQ----SRWDASASRMPGPEY 197          
The following BLAST results are available for this feature:
BLAST of FC930734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
PLET1_ARATH2.943e-3041.01AP2-like ethylene-responsive transcription factor ... [more]
AP2L1_ARATH2.943e-3041.57AP2-like ethylene-responsive transcription factor ... [more]
BBM_ARATH1.118e-2940.45AP2-like ethylene-responsive transcription factor ... [more]
BBM2_BRANA1.460e-2940.45AP2-like ethylene-responsive transcription factor ... [more]
BBM1_BRANA1.907e-2940.45AP2-like ethylene-responsive transcription factor ... [more]
SMZ_ARATH1.367e-2745.45AP2-like ethylene-responsive transcription factor ... [more]
AIL6_ARATH1.511e-2639.33AP2-like ethylene-responsive transcription factor ... [more]
AP2L3_ARATH5.375e-2438.20AP2-like ethylene-responsive transcription factor ... [more]
SNZ_ARATH7.021e-2451.85AP2-like ethylene-responsive transcription factor ... [more]
AP2L4_ARATH1.622e-1233.10AP2-like ethylene-responsive transcription factor ... [more]

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Properties
Property NameValue
Genbank descriptionC34010G01EF PostHarvC1 Citrus clementina cDNA clone C34010G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930734 ID=FC930734; Name=FC930734; organism=Citrus clementina; type=EST; length=724bp
CACCTTTTACAGAAGAACTGGAAGATGGGAATCTCATATATGGGATTCTG
GGAAACAAGTTTATCTAGGTGGATTTGACACTGCACATGCAGCTGCTCGT
GCTTATGATAGGGCAGCTATCAAGTTCCGGGGAGCGGAGGCAGACATAAA
CTTTAGTATAGAAGATTATGAGGATGACTTGAAACAGGAAAGCCTATGGG
TTTACATATGGAAAGATTCTCGTAATGTTGTATGATAACAGATGAGCAAC
TTAACCAAGGAAGAGTTTGTACATGTACTTCGCCGACAAAGCGCCGGTTT
CCCCAGAGGAAGCTCCAAATATAGAGGAGTTACTTTGCACACATGTGGAA
GATGGGAAGCTCGAATGGGCCAATTTTTAGGCAAAAAGTACGTTTATTTG
GGCTTGTTCGATACTGAGGTCGAAGCTGCAAGGGCATATGATAGAGCTGC
AGTTAAGTGTAATGGCAAAGATGCTGTTACTAATTTTGATCCCAGCTTAT
ATCAAGATGAGCTTAAAGCCTCTGGTCATGGTGTAGACCATAATCTAGAT
TTGAGTTTGGGCAGTTCAGCTTCTAATCAGCAAAGCAGTGCGGACTTTGC
TAATAGAATGCAATATACTGTAATGGAACGGCCTGCTCCGGCATCATTGC
CCAATGAAGTTGACTGGCACAACCGGGGTTATAGGCCCTAGCAGCAGCAA
GAAGCGTACAGTAGGCAGCATGAT
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