FC930735

Overview
NameFC930735
Unique NameFC930735
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930735 vs. ExPASy Swiss-Prot
Match: SSH_DROME (Protein phosphatase Slingshot OS=Drosophila melanogaster GN=ssh PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 46/156 (29.49%), Postives = 75/156 (48.08%), Query Frame = 3
Query:  141 ERPSSITSSLFIGGALAARSVYTLKHLGITHILCLCANEIGQSDSQFPDLFKYKNFSISDNEDTNISSIFEEASDFIDHVEQTGGRVLVHRFEGRSRSATLVLAYLMLRKNFTLLQAWNTLKRVHRRAQPNDGFAKILLELDRKLHGEVSMEWQQR 608
            + P+ I   +++G    A ++  L+  G+ HIL    N   + D+ FP  F+Y N  + D+E TN+   +++   +I   +  G +VLVH   G SRSA++V+AY M    +   QA   +K+     +PN  F   L      L    + E  QR
Sbjct:  382 DAPTKIFEHVYLGSEWNASNLEELQKNGVRHIL----NVTREIDNFFPGTFEYFNVRVYDDEKTNLLKYWDDTFRYITRAKAEGSKVLVHCKMGVSRSASVVIAYAMKAYQWEFQQALEHVKKRRSCIKPNKNFLNQLETYSGMLDAMKNKEKLQR 533          
BLAST of FC930735 vs. ExPASy Swiss-Prot
Match: SSH3_RAT (Protein phosphatase Slingshot homolog 3 OS=Rattus norvegicus GN=Ssh3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 49/141 (34.75%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  132 ANTERPSSITSSLFIGGALAARSVYTLKHLGITHILCLCANEIGQSDSQFPDLFKYKNFSISDNEDTNISSIFEEASDFIDHVEQTGGRVLVHRFEGRSRSATLVLAYLMLRKNFTLLQAWNTLKRVHRRAQPNDGFAKIL 554
            A  +R S I   L++G    A ++  L+   ++HIL + A EI   D+ FP+ F Y N  + D E   +   ++E   FI+     G RVLVH   G SRSA  VLAY M +  + L QA   ++ +    +PN GF + L
Sbjct:  321 AQQDRASRIFPHLYLGSEWNAANLEELQRNRVSHILNM-AREI---DNFFPERFTYHNVRVWDEESAQLLPHWKETHRFIEDARAQGTRVLVHCKMGVSRSAATVLAYAMKQYGWGLEQALIHVQELRPIVRPNPGFLRQL 457          
BLAST of FC930735 vs. ExPASy Swiss-Prot
Match: SSH3_MOUSE (Protein phosphatase Slingshot homolog 3 OS=Mus musculus GN=Ssh3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 49/141 (34.75%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  132 ANTERPSSITSSLFIGGALAARSVYTLKHLGITHILCLCANEIGQSDSQFPDLFKYKNFSISDNEDTNISSIFEEASDFIDHVEQTGGRVLVHRFEGRSRSATLVLAYLMLRKNFTLLQAWNTLKRVHRRAQPNDGFAKIL 554
            A  +R S I   L++G    A ++  L+   ++HIL + A EI   D+ FP+ F Y N  + D E   +   ++E   FI+     G RVLVH   G SRSA  VLAY M +  + L QA   ++ +    +PN GF + L
Sbjct:  321 AQQDRASRIFPHLYLGSEWNAANLEELQKNRVSHILNM-AREI---DNFFPERFTYYNVRVWDEESAQLLPHWKETHRFIEDARAQGTRVLVHCKMGVSRSAATVLAYAMKQYGWDLEQALIHVQELRPIVRPNHGFLRQL 457          
BLAST of FC930735 vs. ExPASy Swiss-Prot
Match: DUS18_MOUSE (Dual specificity protein phosphatase 18 OS=Mus musculus GN=Dusp18 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 53/169 (31.36%), Postives = 79/169 (46.75%), Query Frame = 3
Query:  150 SSITSSLFIGGALAARSVYTLKHLGITHILCLCANEIGQSDSQFPDLFKYKNFSISDNEDTNISSIFEEASDFIDHVEQTGGRVLVHRFEGRSRSATLVLAYLMLRKNFTLLQAWNTLKRVHRRAQPNDGFAKILLELDRKLHGEVSMEWQQRKPMMKVCPICGKNAGL 656
            S IT SLFI   +AA +   L    IT ++    N   +  + F +  +Y    + D     +S+ F+  +D I  VE   GR L+H   G SRSA L LAYLM     +L+ A    K      +PN GF + L+  + +L G+ +M+     PM ++  I  K   L
Sbjct:   21 SQITKSLFISNGVAANNKLLLSSNQITTVI----NVSVEVANTFYEDIQYVQVPVVDAPVARLSNFFDSVADRIHSVEMQKGRTLLHCAAGVSRSAALCLAYLMKYHAMSLVDAHTWTKSCRPIIRPNSGFWEQLIHYELQLFGKNTMQMMD-SPMGRIPDIYEKETRL 184          
BLAST of FC930735 vs. ExPASy Swiss-Prot
Match: DUPD1_TAKRU (Dual specificity phosphatase DUPD1 OS=Takifugu rubripes GN=dupd1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 50/143 (34.97%), Postives = 66/143 (46.15%), Query Frame = 3
Query:  150 SSITSSLFIGGALAARSVYTLKHLGITHILCLCA----NEIGQSDSQFPDLFKYKNFSISDNEDTNISSIFEEASDFIDHVEQTGGRVLVHRFEGRSRSATLVLAYLMLRKNFTLLQAWNTLKRVHRRAQPNDGFAKILLELD 566
            + +   ++IG    A     L+ LGITH+L        N +  +D       +Y      D    NIS  F  A+ FI         VLVH   GRSRSATLVLAYLM+  + +++ A   + R  R   PN GF K L  LD
Sbjct:   48 NQVWPGIYIGDEKTALERPGLRDLGITHVLNAAEGKWNNVLTGADYYSDTNIQYYGIEADDKPTFNISQFFHPAAQFIHEALSQPHNVLVHCVMGRSRSATLVLAYLMMEHSLSVVDAIEHV-RQRRCILPNHGFLKQLRALD 189          
BLAST of FC930735 vs. ExPASy Swiss-Prot
Match: DUPD1_CALMI (Dual specificity phosphatase DUPD1 OS=Callorhynchus milii GN=dupd1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 62/162 (38.27%), Postives = 82/162 (50.62%), Query Frame = 3
Query:  102 LERITLISEAANTERPSSITSSLFIGGALAARSVYTLKHLGITHILCLCANE--IGQSDSQFPD-LFKYKNFSISDNEDTNISSIFEEASDFIDHVEQTGGRVLVHRFEGRSRSATLVLAYLMLRKNFTLLQAWNTLKRVHRRA-QPNDGFAKILLELDRKL 575
            LER+     A  T   + +   ++IG    AR   TL+ L ITHIL     +  I    + + D L  Y      D+ D N+S  F  A+ FI     T  ++LVH   GRSRSATLVLAYLM+ KN T++ A   +  + RR   PN GF K L  LD +L
Sbjct:   34 LERLFWKGSAKYTH-VNEVWPGIYIGDE-TARDKATLQRLKITHILNSAHGKFNINTGANYYKDMLIHYYGIEAFDSPDFNLSVFFYSAAKFIRAGLNTP-KLLVHCAMGRSRSATLVLAYLMIYKNMTVVDAIQEV--IQRRCILPNRGFLKQLRTLDIQL 190          
BLAST of FC930735 vs. ExPASy Swiss-Prot
Match: DUS18_PONAB (Dual specificity protein phosphatase 18 OS=Pongo abelii GN=DUSP18 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 46/145 (31.72%), Postives = 72/145 (49.66%), Query Frame = 3
Query:  150 SSITSSLFIGGALAARSVYTLKHLGITHILCLCANEIGQSDSQFPDLFKYKNFSISDNEDTNISSIFEEASDFIDHVEQTGGRVLVHRFEGRSRSATLVLAYLMLRKNFTLLQAWNTLKRVHRRAQPNDGFAKILLELDRKLHGE 584
            S IT SL+I   +AA +   L    IT ++ +    +   ++ + D+ +Y    ++D  D+ +   F+  +D I  VE   GR L+H   G SRSA L LAYLM     +LL A    K      +PN GF + L+  + +L G+
Sbjct:   21 SQITKSLYISNGVAANNKLMLSSNQITMVINVSVEVV---NTLYEDI-QYLQVPVADAPDSRLCDFFDPVADHIHSVEMKQGRTLLHCAAGVSRSAALCLAYLMKYHAMSLLDAHTWTKSCRPIIRPNSGFWEQLIHYEFQLFGK 161          
BLAST of FC930735 vs. ExPASy Swiss-Prot
Match: DUPD1_XENTR (Dual specificity phosphatase DUPD1 OS=Xenopus tropicalis GN=dupd1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 52/147 (35.37%), Postives = 75/147 (51.02%), Query Frame = 3
Query:  150 SSITSSLFIGGALAARSVYTLKHLGITHILCLCANE--IGQSDSQFPDL-FKYKNFSISDNEDTNISSIFEEASDFIDH-VEQTGGRVLVHRFEGRSRSATLVLAYLMLRKNFTLLQA-WNTLKRVHRRAQPNDGFAKILLELDRKL 575
            + +  +L+IG    A   Y+L+  G THIL        +      + D+  +Y      D    N+S  F  A+ FI + +     +VLV+   GRSRSA+LVLAYLM+ +N T++ +    LK  HR   PN GF K L ELD +L
Sbjct:   47 NEVWPNLYIGDEKTALDRYSLEKNGFTHILNAAHGRWNVDTGPEYYSDITVEYYGVEAEDLPSFNLSQFFYPAAQFIRNALSSPSSKVLVNCAMGRSRSASLVLAYLMIYENMTVVDSIMQVLK--HRCILPNRGFLKQLRELDIQL 191          
BLAST of FC930735 vs. ExPASy Swiss-Prot
Match: DUPD1_GASAC (Dual specificity phosphatase DUPD1 OS=Gasterosteus aculeatus GN=dupd1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 54/159 (33.96%), Postives = 75/159 (47.17%), Query Frame = 3
Query:  102 LERITLISEAANTERPSSITSSLFIGGALAARSVYTLKHLGITHILCLCA---NEIGQSDSQFPDL-FKYKNFSISDNEDTNISSIFEEASDFIDHVEQTGGRVLVHRFEGRSRSATLVLAYLMLRKNFTLLQAWNTLKRVHRRAQPNDGFAKILLELD 566
            LE++   S  A     + +  S+++G    A     L+ LGITH+L       N +      + D+  +Y      D    NIS  F  A+ FI H   +  +VLVH   GRSRSA LVLAYLM+    T++ A   + R  R   PN GF + L  LD
Sbjct:   33 LEQLFWTSTGAQYAHVNQVWPSVYVGDEKTALERPGLRVLGITHVLNAAEGKWNNVLTGAHYYTDMDIQYFGVEADDKPTFNISQFFCSATQFI-HEALSHPKVLVHCVMGRSRSAALVLAYLMMEHGLTVVDAIEHV-RQRRCVLPNHGFLRQLRALD 189          
BLAST of FC930735 vs. ExPASy Swiss-Prot
Match: DUSP3_DICDI (Probable dual specificity protein phosphatase DDB_G0271350 OS=Dictyostelium discoideum GN=DDB_G0271350 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 48/151 (31.79%), Postives = 75/151 (49.67%), Query Frame = 3
Query:  168 LFIGGALAARSVYTLKHLGITHILCLCANEIGQSDSQFPDLFKYKNFSISDNEDTNISSIFEEASDFIDHVE-QTGGRVLVHRFEGRSRSATLVLAYLMLRKNFTLLQAWNTLKRVHRRAQPNDGFAKILLELDRKLHGEVSM-----EWQ 602
            L++G A   +    ++ L ITHI   CA  +       P+ +   N    D+E  +IS   E+A  FI+ V  + G RV +H   G+SRSA++VL+YL+ R   +L      L       +PNDGF   L +L+ KL  + ++     EW+
Sbjct:   11 LYLGAAKDTKDEKEMEKLKITHIFS-CAGTVHS-----PEKYIIANEKFEDDETVDISEQIEKAYWFIERVRMKKGARVFIHCMAGKSRSASIVLSYLLKRDIHSLSDCLFYLHSKRLEIRPNDGFMNQLCDLELKLTNKQTLSKEIKEWR 155          
The following BLAST results are available for this feature:
BLAST of FC930735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
SSH_DROME1.617e-1129.49Protein phosphatase Slingshot OS=Drosophila melano... [more]
SSH3_RAT1.617e-1134.75Protein phosphatase Slingshot homolog 3 OS=Rattus ... [more]
SSH3_MOUSE2.112e-1134.75Protein phosphatase Slingshot homolog 3 OS=Mus mus... [more]
DUS18_MOUSE2.112e-1131.36Dual specificity protein phosphatase 18 OS=Mus mus... [more]
DUPD1_TAKRU3.602e-1134.97Dual specificity phosphatase DUPD1 OS=Takifugu rub... [more]
DUPD1_CALMI3.602e-1138.27Dual specificity phosphatase DUPD1 OS=Callorhynchu... [more]
DUS18_PONAB4.704e-1131.72Dual specificity protein phosphatase 18 OS=Pongo a... [more]
DUPD1_XENTR4.704e-1135.37Dual specificity phosphatase DUPD1 OS=Xenopus trop... [more]
DUPD1_GASAC4.704e-1133.96Dual specificity phosphatase DUPD1 OS=Gasterosteus... [more]
DUSP3_DICDI6.144e-1131.79Probable dual specificity protein phosphatase DDB_... [more]

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Properties
Property NameValue
Genbank descriptionC34010G02EF PostHarvC1 Citrus clementina cDNA clone C34010G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930735 ID=FC930735; Name=FC930735; organism=Citrus clementina; type=EST; length=683bp
GCTGTTAACTCTGCCAGGAAAACAATTTTAATACAGGGTTCTTTGAGGGT
AGTGATGGTGTTGTTGATACTTACGAATTGAAGGTCAGACTTGAGCATAT
TCTTGAGAGGATAACATTAATTTCTGAGGCGGCAAATACAGAGAGGCCCT
CTTCAATCACAAGTAGCCTGTTCATTGGTGGTGCCCTGGCTGCAAGATCT
GTTTACACGCTTAAACATTTAGGAATTACTCATATACTGTGTTTGTGCGC
CAATGAAATCGGACAGTCAGATTCTCAGTTTCCTGATCTCTTCAAGTACA
AAAATTTTTCTATAAGTGACAATGAAGATACAAACATCAGCAGTATCTTT
GAAGAAGCTTCGGATTTTATTGATCATGTTGAACAAACGGGTGGGAGAGT
CCTAGTTCATCGCTTTGAAGGGAGAAGTAGAAGTGCCACATTAGTGCTTG
CCTACTTGATGCTCAGGAAGAACTTCACACTATTACAAGCATGGAATACC
CTAAAACGAGTTCATCGCCGAGCCCAGCCCAATGATGGGTTTGCAAAGAT
TCTTTTGGAGCTTGACAGGAAACTGCATGGTGAAGTTTCAATGGAGTGGC
AACAGCGGAAGCCAATGATGAAAGTTTGCCCAATATGCGGGAAGAATGCC
GGTCTGAGCAGCAGCTCACTTAAGCTTCATTTG
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