FC930740

Overview
NameFC930740
Unique NameFC930740
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930740 vs. ExPASy Swiss-Prot
Match: CATQ_RAT (Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.160e-23
Identity = 65/175 (37.14%), Postives = 95/175 (54.29%), Query Frame = 1
Query:  217 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSEN----RTYKVGLNRFADLTNEEYRSMHLGARFGAKRTS--LKSKRSNRYLPRVG---EALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFII 711
            ++ W +K+ K Y+   E  KR  +++EN++ I+ HN EN     TY + +N FAD+T+EE++ M +G +     T   L  +    + P      +ALP  VDWR +G V  V+ QG C SCWAF    A+EG     TG LI LS Q L+DC     N GC  G    AF++++
Sbjct:   29 WQEWKIKYEKLYSPEEEVLKRV-VWEENVKKIELHNRENSLGKNTYTMEINDFADMTDEEFKDMIIGFQLPVHNTEKRLWKRALGSFFPNSWNWRDALPKFVDWRNEGYVTRVRKQGGCSSCWAFPVTGAIEGQMFKKTGKLIPLSVQNLIDCSKPQGNRGCLWGNTYNAFQYVL 202          
BLAST of FC930740 vs. ExPASy Swiss-Prot
Match: CATV_NPVOP (Viral cathepsin OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.978e-23
Identity = 66/166 (39.76%), Postives = 92/166 (55.42%), Query Frame = 1
Query:  217 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNR----YLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFE 702
            FE +L K  K Y++  EK  RF+IF+ NL  I   N  + T +  +N+F+DL+ EE  S + G        SL  +  N      L R  +  P   DWR+   V  VK+QG CG+CWAF+T+ ++E    I    LI+LSEQ+ +DCD   N GC+GGL+  AFE
Sbjct:   28 FEDFLHKFNKNYSSESEKLHRFKIFQHNLEEIINKNQNDSTAQYEINKFSDLSKEEAISKYTGL-------SLPHQTQNFCEVVILDRPPDRGPLEFDWRQFNKVTSVKNQGVCGACWAFATLGSLESQFAIKYNRLINLSEQQFIDCD-RVNAGCDGGLLHTAFE 185          
BLAST of FC930740 vs. ExPASy Swiss-Prot
Match: CATR_MOUSE (Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.978e-23
Identity = 67/179 (37.43%), Postives = 95/179 (53.07%), Query Frame = 1
Query:  196 DDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVG----LNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPR--VGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFII 711
            D  + A ++ W +K+ K+Y+   EK KR  +++E L+ I  HN EN   K G    +N F D T+EE+R M +         S+ + R  + + +   G  LP  VDWRKKG V  V+ QG C +CWAF+   A+E      TG L  LS Q LVDC     N GC GG    AF++++
Sbjct:   22 DSSLDAEWQDWKIKYNKSYSLKEEKLKRV-VWEEKLKMIKLHNRENSLGKNGFTMKMNEFGDQTDEEFRKMMI-------EISVWTHREGKSIMKREAGSILPKFVDWRKKGYVTPVRRQGDCDACWAFAVTGAIEAQAIWQTGKLTPLSVQNLVDCSKPQGNNGCLGGDTYNAFQYVL 192          
BLAST of FC930740 vs. ExPASy Swiss-Prot
Match: TEST2_MOUSE (Testin-2 OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.375e-23
Identity = 66/185 (35.68%), Postives = 96/185 (51.89%), Query Frame = 1
Query:  169 ESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE----NRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDC-DTSYNEGCNGGLMDYAFEFI 708
            E  S++   D  +   +  W  KHGKAYN + E+  R  ++++N + I+ HN E       + + +N F DLTN E+  M  G R        K KR + +       +P  VDWR  G V  VK+QG C S WAFS   ++EG     TG L+ LSEQ L+DC  ++    C+GG M  AF+++
Sbjct:   13 EIDSTAPTLDPSLDVQWNEWRTKHGKAYN-VNEERLRRAVWEKNFKMIELHNWEYLEGKHDFTMTMNAFGDLTNTEFVKMMTGFR------RQKIKRMHVFQDHQFLYVPKYVDWRMLGYVTPVKNQGYCASSWAFSATGSLEGQMFKKTGRLVPLSEQNLLDCMGSNVTHDCSGGFMQNAFQYV 190          
BLAST of FC930740 vs. ExPASy Swiss-Prot
Match: CATV_NPVAP (Viral cathepsin OS=Antheraea pernyi nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.375e-23
Identity = 63/169 (37.28%), Postives = 97/169 (57.40%), Query Frame = 1
Query:  217 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNR----YLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFII 711
            FE +L K  K Y++  EK +RF+IF+ NL  I   N  + + +  +N+F+DL+ +E  S + G        SL  ++ N      L R  +  P   DWR+   V  VK+QG CG+CWAF+T+ ++E    I    LI+LSEQ+L+DCD   + GC+GGL+  A+E ++
Sbjct:   28 FEEFLHKFNKNYSSESEKLRRFKIFQHNLEEIINKNQNDTSAQYEINKFSDLSKDETISKYTGL-------SLPLQKQNFCEVVVLDRPPDKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHDQLINLSEQQLIDCD-FVDVGCDGGLLHTAYEAVM 188          
BLAST of FC930740 vs. ExPASy Swiss-Prot
Match: CATL1_PARTE (Cathepsin L 1 OS=Paramecium tetraurelia GN=GSPATT00020990001 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.375e-23
Identity = 61/170 (35.88%), Postives = 96/170 (56.47%), Query Frame = 1
Query:  214 MFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDE--HNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDW--RKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFI 708
            ++  W +K+ + Y    ++  R+++F +NL +I     + E  T+ + LN+FAD++ +E+   +L  +    RT+  +  ++ +  +  E     VDW   KK     VK+QGSCGSCWAFS + A+E    I       LSEQ+LVDC   Y N+GCNGG MD AFE++
Sbjct:   25 LYANWKMKYNRRYTNQRDEMYRYKVFTDNLNYIRAFYESPEEATFTLELNQFADMSQQEFAQTYLSLK--VPRTAKLNAANSNFQYKGAE-----VDWTDNKKVKYPAVKNQGSCGSCWAFSAVGALEINTDIELNRKYELSEQDLVDCSGPYDNDGCNGGWMDSAFEYV 187          
BLAST of FC930740 vs. ExPASy Swiss-Prot
Match: CATF_MOUSE (Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.375e-23
Identity = 63/169 (37.28%), Postives = 95/169 (56.21%), Query Frame = 1
Query:  214 MFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR-TYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLP---RVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFI 708
            +F+ ++  + + Y +  E + R  +F  N+    +  + +R T + G+ +F+DLT EE+ +++L          L  K S R +     + +  P   DWRKKGAV EVK+QG CGSCWAFS    VEG   +  G+L+SLSEQEL+DCD   ++ C GGL   A+  I
Sbjct:  164 LFKDFMTTYNRTYESREEAQWRLTVFARNMIRAQKIQALDRGTAQYGITKFSDLTEEEFHTIYLNP--------LLQKESGRKMSPAKSINDLAPPEWDWRKKGAVTEVKNQGMCGSCWAFSVTGNVEGQWFLNRGTLLSLSEQELLDCD-KVDKACLGGLPSNAYAAI 323          
BLAST of FC930740 vs. ExPASy Swiss-Prot
Match: ACP1_ENTHI (Cysteine proteinase ACP1 OS=Entamoeba histolytica GN=ACP1 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.375e-23
Identity = 67/166 (40.36%), Postives = 91/166 (54.82%), Query Frame = 1
Query:  217 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEH-NSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEG-INKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFI 708
            F+ W   H K +    E   RF +F +N +F++ + N+E       LN FAD+T+EE+   HLG  +    T+   K + +       A P+SVDWR    +   KDQG CGSCW F T A +EG +NK + G L S SEQ+LVDCD S N GC GG    + +FI
Sbjct:   18 FKQWAATHNKVFANRAEYLYRFAVFLDNKKFVEANANTE-------LNVFADMTHEEFIQTHLGMTYEVPETTSNVKAAVK-------AAPESVDWRS--IMNPAKDQGQCGSCWTFCTTAVLEGRVNKDL-GKLYSFSEQQLVDCDASDN-GCEGGHPSNSLKFI 165          
BLAST of FC930740 vs. ExPASy Swiss-Prot
Match: CATV_NPVSE (Viral cathepsin OS=Spodoptera exigua nuclear polyhedrosis virus (strain US) GN=VCATH PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.407e-23
Identity = 61/165 (36.97%), Postives = 88/165 (53.33%), Query Frame = 1
Query:  217 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFII 711
            FE ++ ++ K Y +  EK+ R+ IF+ N+  I++ NS N +    +NRFAD+   E    H G   G     L    +           P S DWR    +  VKDQG CG+CW F+++ A+E    I    LI LSEQ+LVDCD   + GC+GGL+  A+E I+
Sbjct:   40 FEKFITQYNKQYKSEDEKKYRYNIFRHNIESINQKNSRNDSAVYKINRFADMPKNEIVIRHTGLASG--ELGLNFCETIVVDGPAQRQRPVSFDWRSMNKITSVKDQGMCGACWRFASLGALESQYAIKYDRLIDLSEQQLVDCD-FVDMGCDGGLIHTAYEQIM 201          
BLAST of FC930740 vs. ExPASy Swiss-Prot
Match: CATV_NPVMC (Viral cathepsin OS=Mamestra configurata nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.518e-23
Identity = 62/166 (37.35%), Postives = 92/166 (55.42%), Query Frame = 1
Query:  217 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEAL-PDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFII 711
            FE ++ ++ K Y++  EK+ R+ IF+ N+  I+  NS N +    +NRFAD+T  E  + H G   G    +         +   G+   P + DWR    V  VKDQG CG+CWAF+ + A+E    I    LI L+EQ+LVDCD   + GC+GGL+  A+E I+
Sbjct:   40 FEKFISQYNKQYSSEDEKKYRYNIFRHNIESINAKNSRNDSAVYKINRFADMTKNEVVNRHTGLASGDIGANFCE---TIVVDGPGQRQRPANFDWRNYNKVTSVKDQGMCGACWAFAGLGALESQYAIKYDRLIDLAEQQLVDCD-FVDMGCDGGLIHTAYEQIM 201          
The following BLAST results are available for this feature:
BLAST of FC930740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
CATQ_RAT1.160e-2337.14Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1[more]
CATV_NPVOP1.978e-2339.76Viral cathepsin OS=Orgyia pseudotsugata multicapsi... [more]
CATR_MOUSE1.978e-2337.43Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1[more]
TEST2_MOUSE3.375e-2335.68Testin-2 OS=Mus musculus PE=2 SV=1[more]
CATV_NPVAP3.375e-2337.28Viral cathepsin OS=Antheraea pernyi nuclear polyhe... [more]
CATL1_PARTE3.375e-2335.88Cathepsin L 1 OS=Paramecium tetraurelia GN=GSPATT0... [more]
CATF_MOUSE3.375e-2337.28Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1[more]
ACP1_ENTHI3.375e-2340.36Cysteine proteinase ACP1 OS=Entamoeba histolytica ... [more]
CATV_NPVSE4.407e-2336.97Viral cathepsin OS=Spodoptera exigua nuclear polyh... [more]
CATV_NPVMC7.518e-2337.35Viral cathepsin OS=Mamestra configurata nucleopoly... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34010G07EF PostHarvC1 Citrus clementina cDNA clone C34010G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930740 ID=FC930740; Name=FC930740; organism=Citrus clementina; type=EST; length=711bp
GACTCTGCCTCATCAATCCATCTTCTTCTCCCAAAAAGAAAAAAAAAAAA
GTTCTTTTCTCAAAAGATGGGTTTGTTTAGATCACCAACCATGGCCATGT
TTTTACTTTTTCTCTTCACTGTTTCATCTGCCTTGGACATGTCGATTGTA
TCTTATGATAAAACCCATGAGTCAAAATCTAGCAGCTGGAGGACCGACGA
TGAGGTTATGGCTATGTTCGAGGCCTGGCTCGTGAAGCATGGCAAGGCTT
ATAACGCTTTGGGTGAAAAAGAGAAGAGGTTTGAGATCTTTAAGGAAAAT
CTTAGGTTTATTGATGAACATAACTCAGAGAACCGGACCTACAAGGTTGG
GTTGAACCGGTTTGCTGATTTGACCAACGAGGAGTACCGGTCCATGCATC
TGGGTGCACGCTTTGGTGCTAAAAGGACTTCCTTGAAATCAAAGAGGAGC
AACCGTTATCTGCCACGTGTCGGCGAGGCGTTGCCGGACTCTGTTGATTG
GAGGAAGAAAGGAGCTGTCGCTGAAGTTAAAGATCAAGGAAGCTGTGGGA
GTTGCTGGGCATTTTCAACCATTGCAGCTGTAGAGGGTATAAACAAGATT
GTTACAGGTAGCCTGATCTCACTATCCGAGCAGGAGTTGGTGGATTGTGA
TACATCATATAATGAAGGATGTAATGGTGGTTTGATGGACTATGCATTCG
AGTTCATTATT
back to top