FC930740

Overview
NameFC930740
Unique NameFC930740
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13920 contig Ccv1_Contig13920:23..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930740 vs. ExPASy Swiss-Prot
Match: CATL1_BOVIN (Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 9.796e-31
Identity = 74/182 (40.66%), Postives = 107/182 (58.79%), Query Frame = 1
Query:  178 SSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE----NRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFI 708
            S++ + D  + A +  W   H + Y  + E+E R  ++++N + ID HN E       +++ +N F D+TNEE+R +  G +      + K K+   +   +   +P SVDW KKG V  VK+QG CGSCWAFS   A+EG     TG L+SLSEQ LVDC  +  N+GCNGGLMD AF++I
Sbjct:   16 SAAPKLDPNLDAHWHQWKATHRRLYG-MNEEEWRRAVWEKNKKIIDLHNQEYSEGKHGFRMAMNAFGDMTNEEFRQVMNGFQ------NQKHKKGKLFHEPLLVDVPKSVDWTKKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNQGCNGGLMDNAFQYI 190          
BLAST of FC930740 vs. ExPASy Swiss-Prot
Match: CYSP1_HOMAM (Digestive cysteine proteinase 1 OS=Homarus americanus GN=LCP1 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.279e-30
Identity = 70/172 (40.70%), Postives = 107/172 (62.21%), Query Frame = 1
Query:  217 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR----TYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDS--VDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDC--DTSYNEGCNGGLMDYAFEFI 708
            +E +  K G+ Y  L E+  R  +F +NL++I+E N +      TY + +N+F+D+TNE++ ++  G + G +  ++ +           +A P+S  VDWR KGAV  VKDQG CGSCWAFST   +EG + + TG L+SLSEQ+LVDC   + YN+GCNGG ++ A  ++
Sbjct:   20 WEEFKGKFGRKYVDLEEERYRLNVFLDNLQYIEEFNKKYERGEVTYNLAINQFSDMTNEKFNAVMKGYKKGPRPAAVFTST---------DAAPESTEVDWRTKGAVTPVKDQGQCGSCWAFSTTGGIEGQHFLKTGRLVSLSEQQLVDCAGGSYYNQGCNGGWVERAIMYV 182          
BLAST of FC930740 vs. ExPASy Swiss-Prot
Match: CATL1_HUMAN (Cathepsin L1 OS=Homo sapiens GN=CTSL1 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.279e-30
Identity = 73/182 (40.11%), Postives = 107/182 (58.79%), Query Frame = 1
Query:  178 SSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR----TYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCD-TSYNEGCNGGLMDYAFEFI 708
            S++   D  + A +  W   H + Y  + E+  R  ++++N++ I+ HN E R    ++ + +N F D+T+EE+R +  G +      + K ++   +   +    P SVDWR+KG V  VK+QG CGSCWAFS   A+EG     TG LISLSEQ LVDC     NEGCNGGLMDYAF+++
Sbjct:   16 SATLTFDHSLEAQWTKWKAMHNRLYG-MNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQ------NRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYV 190          
BLAST of FC930740 vs. ExPASy Swiss-Prot
Match: CATL1_CANFA (Cathepsin L1 OS=Canis familiaris GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.671e-30
Identity = 74/182 (40.66%), Postives = 106/182 (58.24%), Query Frame = 1
Query:  178 SSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVG----LNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFI 708
            S++ + D  + A +  W   H + Y  + E+  R  ++++N++ I+ HN E    K G    +N F D+TNEE+R +  G +      + K K+   +   +   +P SVDWR+KG V  VK+QG CGSCWAFS   A+EG     TG L+SLSEQ LVDC  +  NEGCNGGLMD AF ++
Sbjct:   16 SAAPKFDQSLNAQWYQWKATHRRLYG-MNEEGWRRAVWEKNMKMIELHNREYSQGKHGFTMAMNAFGDMTNEEFRQVMNGFQ------NQKHKKGKMFQEPLFAEIPKSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNEGCNGGLMDNAFRYV 190          
BLAST of FC930740 vs. ExPASy Swiss-Prot
Match: CATL1_PIG (Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.182e-30
Identity = 72/182 (39.56%), Postives = 107/182 (58.79%), Query Frame = 1
Query:  178 SSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE----NRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFI 708
            S++ + D  + A +  W   HG+ Y  + E+  R  ++++N++ I+ HN E       + + +N F D+TNEE+R +  G +      + K K+   +   +   +P SVDWR+KG V  VK+QG CGSCWAFS   A+EG     TG L+SLSEQ LVDC     N+GCNGGLMD AF+++
Sbjct:   16 SAAPKLDQNLDADWYKWKATHGRLYG-MNEEGWRRAVWEKNMKMIELHNQEYSQGKHGFSMAMNAFGDMTNEEFRQVMNGFQ------NQKHKKGKVFHESLVLEVPKSVDWREKGYVTAVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGLMDNAFQYV 190          
BLAST of FC930740 vs. ExPASy Swiss-Prot
Match: CATH_HUMAN (Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4)

HSP 1 Score: 131.724 bits (330), Expect = 3.722e-30
Identity = 73/167 (43.71%), Postives = 104/167 (62.28%), Query Frame = 1
Query:  217 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGA-VAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSY-NEGCNGGLMDYAFEFII 711
            F++W+ KH K Y+   E   R + F  N R I+ HN+ N T+K+ LN+F+D++  E +  +L +    +  +  + +SN YL   G   P SVDWRKKG  V+ VK+QG+CGSCW FST  A+E    I TG ++SL+EQ+LVDC   + N GC GGL   AFE+I+
Sbjct:   35 FKSWMSKHRKTYST-EEYHHRLQTFASNWRKINAHNNGNHTFKMALNQFSDMSFAEIKHKYLWS----EPQNCSATKSN-YLRGTGP-YPPSVDWRKKGNFVSPVKNQGACGSCWTFSTTGALESAIAIATGKMLSLAEQQLVDCAQDFNNHGCQGGLPSQAFEYIL 194          
BLAST of FC930740 vs. ExPASy Swiss-Prot
Match: CATK_MACMU (Cathepsin K OS=Macaca mulatta GN=CTSK PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.862e-30
Identity = 74/170 (43.53%), Postives = 101/170 (59.41%), Query Frame = 1
Query:  217 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSEN----RTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNR--YLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFI 708
            +E W   H K YN+  ++  R  I+++NL++I  HN E      TY++ +N   D+TNEE      G +  A  +     RSN   Y+P      PDSVD+RKKG V  VK+QG CGSCWAFS++ A+EG  K  TG L++LS Q LVDC  S N+GC GG M  AF+++
Sbjct:   26 WELWKKTHRKQYNSKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTNEEVVQKMTGLKVPASHS-----RSNDTLYIPDWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSENDGCGGGYMTNAFQYV 189          
BLAST of FC930740 vs. ExPASy Swiss-Prot
Match: CATK_MACFA (Cathepsin K OS=Macaca fascicularis GN=CTSK PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.862e-30
Identity = 74/170 (43.53%), Postives = 101/170 (59.41%), Query Frame = 1
Query:  217 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSEN----RTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNR--YLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFI 708
            +E W   H K YN+  ++  R  I+++NL++I  HN E      TY++ +N   D+TNEE      G +  A  +     RSN   Y+P      PDSVD+RKKG V  VK+QG CGSCWAFS++ A+EG  K  TG L++LS Q LVDC  S N+GC GG M  AF+++
Sbjct:   26 WELWKKTHRKQYNSKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTNEEVVQKMTGLKVPASHS-----RSNDTLYIPDWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSENDGCGGGYMTNAFQYV 189          
BLAST of FC930740 vs. ExPASy Swiss-Prot
Match: CYSP_TRYBB (Cysteine proteinase OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.349e-30
Identity = 73/176 (41.48%), Postives = 100/176 (56.82%), Query Frame = 1
Query:  184 SWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNRYLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFII 711
            S   ++ +   F A+  K+GK Y    E+  RF  F+EN+       + N     G+  F+D+T EE+R+ +   R GA   +   KR  + +       P +VDWR+KGAV  VK QG CGSCWAFSTI  +EG  ++    L+SLSEQ LV CDT  + GCNGGLMD AF +I+
Sbjct:   30 SLHVEESLEMRFAAFKKKYGKVYKDAKEEAFRFRAFEENMEQAKIQAAANPYATFGVTPFSDMTREEFRARY---RNGASYFAAAQKRLRKTVNVTTGRAPAAVDWREKGAVTPVKVQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDT-IDSGCNGGLMDNAFNWIV 201          
BLAST of FC930740 vs. ExPASy Swiss-Prot
Match: CATK_BOVIN (Cathepsin K OS=Bos taurus GN=CTSK PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 6.349e-30
Identity = 74/170 (43.53%), Postives = 102/170 (60.00%), Query Frame = 1
Query:  217 FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSEN----RTYKVGLNRFADLTNEEYRSMHLGARFGAKRTSLKSKRSNR--YLPRVGEALPDSVDWRKKGAVAEVKDQGSCGSCWAFSTIAAVEGINKIVTGSLISLSEQELVDCDTSYNEGCNGGLMDYAFEFI 708
            +E W   + K YN+ G++  R  I+++NL+ I  HN E      TY++ +N   D+T+EE      G +  A R+     RSN   Y+P      PDSVD+RKKG V  VK+QG CGSCWAFS++ A+EG  K  TG L++LS Q LVDC  S N+GC GG M  AF+++
Sbjct:   26 WELWKKTYRKQYNSKGDEISRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPASRS-----RSNDTLYIPDWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSENDGCGGGYMTNAFQYV 189          
The following BLAST results are available for this feature:
BLAST of FC930740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 156
Match NameE-valueIdentityDescription
CATL1_BOVIN9.796e-3140.66Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3[more]
CYSP1_HOMAM1.279e-3040.70Digestive cysteine proteinase 1 OS=Homarus america... [more]
CATL1_HUMAN1.279e-3040.11Cathepsin L1 OS=Homo sapiens GN=CTSL1 PE=1 SV=2[more]
CATL1_CANFA1.671e-3040.66Cathepsin L1 OS=Canis familiaris GN=CTSL1 PE=2 SV=... [more]
CATL1_PIG2.182e-3039.56Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1[more]
CATH_HUMAN3.722e-3043.71Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4[more]
CATK_MACMU4.862e-3043.53Cathepsin K OS=Macaca mulatta GN=CTSK PE=1 SV=1[more]
CATK_MACFA4.862e-3043.53Cathepsin K OS=Macaca fascicularis GN=CTSK PE=2 SV... [more]
CYSP_TRYBB6.349e-3041.48Cysteine proteinase OS=Trypanosoma brucei brucei P... [more]
CATK_BOVIN6.349e-3043.53Cathepsin K OS=Bos taurus GN=CTSK PE=2 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34010G07EF PostHarvC1 Citrus clementina cDNA clone C34010G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930740 ID=FC930740; Name=FC930740; organism=Citrus clementina; type=EST; length=711bp
GACTCTGCCTCATCAATCCATCTTCTTCTCCCAAAAAGAAAAAAAAAAAA
GTTCTTTTCTCAAAAGATGGGTTTGTTTAGATCACCAACCATGGCCATGT
TTTTACTTTTTCTCTTCACTGTTTCATCTGCCTTGGACATGTCGATTGTA
TCTTATGATAAAACCCATGAGTCAAAATCTAGCAGCTGGAGGACCGACGA
TGAGGTTATGGCTATGTTCGAGGCCTGGCTCGTGAAGCATGGCAAGGCTT
ATAACGCTTTGGGTGAAAAAGAGAAGAGGTTTGAGATCTTTAAGGAAAAT
CTTAGGTTTATTGATGAACATAACTCAGAGAACCGGACCTACAAGGTTGG
GTTGAACCGGTTTGCTGATTTGACCAACGAGGAGTACCGGTCCATGCATC
TGGGTGCACGCTTTGGTGCTAAAAGGACTTCCTTGAAATCAAAGAGGAGC
AACCGTTATCTGCCACGTGTCGGCGAGGCGTTGCCGGACTCTGTTGATTG
GAGGAAGAAAGGAGCTGTCGCTGAAGTTAAAGATCAAGGAAGCTGTGGGA
GTTGCTGGGCATTTTCAACCATTGCAGCTGTAGAGGGTATAAACAAGATT
GTTACAGGTAGCCTGATCTCACTATCCGAGCAGGAGTTGGTGGATTGTGA
TACATCATATAATGAAGGATGTAATGGTGGTTTGATGGACTATGCATTCG
AGTTCATTATT
back to top