FC930741

Overview
NameFC930741
Unique NameFC930741
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: DHG_BACME (Glucose 1-dehydrogenase OS=Bacillus megaterium PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.636e-17
Identity = 60/205 (29.27%), Postives = 102/205 (49.76%), Query Frame = 2
Query:   65 LKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQ-VLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASW-YQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLA 673
            L+GKV +ITG  +G+G  ++ +F    A V +  R K+   ++ +  ++ +G +A+  +GDV  +     +V+S  + FGKLD+++N A     VS+ ++S + +  V+D +  G F    EA+KY  +            ++N+S ++H    W   +H          +T  LALE+ A   IRVN I PG I       K A
Sbjct:    5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVE------NDIKGTVINMS-SVHEKIPWPLFVHYAASKGGMKLMTETLALEY-APKGIRVNNIGPGAINTPINAEKFA 201          
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: GRDH2_ARATH (Glucose and ribitol dehydrogenase homolog 2 OS=Arabidopsis thaliana GN=At3g05260 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.361e-17
Identity = 66/200 (33.00%), Postives = 94/200 (47.00%), Query Frame = 2
Query:   65 LKGKVALITGGGSGIGFEISTQFGKHGASVA---IMGRRKQVLDAAVSALRSLGIKA----VGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPI 643
            L GKVAL+TGG SGIG  +   +   GASVA   + GR  +  +  +  L  +  +     +    D+  +E+ K+VVE     FG++D+LVN AA    VS ED+       V   +    F +   ALK++K+                S+ L YTA+   I            TR LAL+  A   IRVNG+APGP+
Sbjct:   37 LHGKVALVTGGDSGIGKAVCHCYALEGASVAFTYVKGREDKDAEETLRLLHEVKTREAKEPIMIATDLGFEENCKRVVEEVVNSFGRIDVLVNCAAEQHEVSIEDIDEARLERVFRTNIFSQFFLVKYALKHMKEGSSIINTTSVVAYAGNSSLLEYTATKGAI---------VSFTRGLALQL-APKGIRVNGVAPGPV 226          
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: PECR_CAVPO (Peroxisomal trans-2-enoyl-CoA reductase OS=Cavia porcellus GN=PECR PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17
Identity = 61/206 (29.61%), Postives = 98/206 (47.57%), Query Frame = 2
Query:   62 ILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALR-----SLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMN 664
            +L+ + A++TGGG+GIG  I+ +    G +V I  R+   L AA   L+     S   +    + ++R++E    +++ST   +GK+D LVN   G F  S E +S  G+  V++ +  GTF MC  A     K            I+NI   L+     +  H          +T++LAL W A   IR+N +APG +     M+
Sbjct:   15 LLQNRAAIVTGGGTGIGKAIAKELLHLGCNVVIASRKFDRLRAAAEELKATLPPSNKAEVTPIQCNIRKEEEVNNLMKSTLALYGKIDFLVNNGGGQFWSSPEHISSKGWHAVIETNLTGTFYMCKAAYNSWMK-------EHGGAIVNIIILLN--GQPFVAHSGAARGGVYNLTKSLALGW-ARSGIRINCVAPGTVYSQTAMD 210          
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: DHGA_BACME (Glucose 1-dehydrogenase A OS=Bacillus megaterium GN=gdhA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17
Identity = 62/206 (30.10%), Postives = 101/206 (49.03%), Query Frame = 2
Query:   65 LKGKVALITGGGSGIGFEISTQFGKHGASVAI--MGRRKQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASW-YQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLA 673
            LK KV +ITGG +G+G  ++ +FG+  A V I      ++ LDA    +   G +A+  +GDV ++E    +V++  + FG LD+++N A     V + +LS + +  V+D +  G F    EA+KY  +            ++N+S ++H    W   +H          +T  LALE+ A   IRVN I PG +       K A
Sbjct:    5 LKDKVVVITGGSTGLGRAMAVRFGQEEAKVVINYYNNEEEALDAK-KEVEEAGGQAIIVQGDVTKEEDVVNLVQTAIKEFGTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLTGAFLGSREAIKYFVE------NDIKGNVINMS-SVHEMIPWPLFVHYAASKGGMKLMTETLALEY-APKGIRVNNIGPGAMNTPINAEKFA 201          
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: DHG4_BACME (Glucose 1-dehydrogenase 4 OS=Bacillus megaterium GN=gdhIV PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17
Identity = 62/206 (30.10%), Postives = 101/206 (49.03%), Query Frame = 2
Query:   65 LKGKVALITGGGSGIGFEISTQFGKHGASVAI--MGRRKQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASW-YQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLA 673
            LK KV +ITGG +G+G  ++ +FG+  A V I      ++ LDA    +   G +A+  +GDV ++E    +V++  + FG LD+++N A     V + +LS + +  V+D +  G F    EA+KY  +            ++N+S ++H    W   +H          +T  LALE+ A   IRVN I PG +       K A
Sbjct:    5 LKDKVVVITGGSTGLGRAMAVRFGQEEAKVVINYYNNEEEALDAK-KEVEEAGGQAIIVQGDVTKEEDVVNLVQTAIKEFGTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLTGAFLGSREAIKYFVE------NDIKGNVINMS-SVHEMIPWPLFVHYAASKGGMKLMTETLALEY-APKGIRVNNIGPGAMNTPINAEKFA 201          
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: DHG3_BACME (Glucose 1-dehydrogenase 3 OS=Bacillus megaterium GN=gdhIII PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.614e-17
Identity = 62/206 (30.10%), Postives = 101/206 (49.03%), Query Frame = 2
Query:   65 LKGKVALITGGGSGIGFEISTQFGKHGASVAI--MGRRKQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASW-YQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLA 673
            LK KV +ITGG +G+G  ++ +FG+  A V I      ++ LDA    +   G +A+  +GDV ++E    +V++  + FG LD+++N A     V + +LS + +  V+D +  G F    EA+KY  +            ++N+S ++H    W   +H          +T  LALE+ A   IRVN I PG +       K A
Sbjct:    5 LKDKVVVITGGSTGLGRAMAVRFGQEEAKVVINYYNNEEEALDAK-KEVEEAGGQAIIVQGDVTKEEDVVNLVQTAIKEFGTLDVMINNAGVENPVPSHELSLDNWNKVIDTNLTGAFLGSREAIKYFVE------NDIKGNVINMS-SVHEMIPWPLFVHYAASKGGMKQMTETLALEY-APKGIRVNNIGPGAMNTPINAEKFA 201          
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: Y325_THEMA (Uncharacterized oxidoreductase TM_0325 OS=Thermotoga maritima GN=TM_0325 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.256e-16
Identity = 62/190 (32.63%), Postives = 96/190 (50.53%), Query Frame = 2
Query:   68 KGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPG 637
            +GKV LITG GSGIG + +  F + GA VAI    ++     V  ++S+G +A    GDV +   A+++V+ T E FG+LDILVN A      + E+ S   F   M ++  G F +   A++ +KK            I+N+S+         +            +TR+LA+++  DY IRVN + PG
Sbjct:    4 QGKVVLITGAGSGIGKKAAVMFAERGAKVAINDISEEKGKETVELIKSMGGEAAFIFGDVAKD--AEQIVKKTVETFGRLDILVNNAGIVPYGNIEETSEEDFDKTMAVNVKGPFLLSKYAVEQMKK-------QGGGVIVNVSSEAGLIGIPRRCVYSVSKAALLGLTRSLAVDY-VDYGIRVNAVCPG 183          
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: DHG2_BACSU (Glucose 1-dehydrogenase 2 OS=Bacillus subtilis GN=ycdF PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.256e-16
Identity = 60/195 (30.77%), Postives = 94/195 (48.21%), Query Frame = 2
Query:   65 LKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQV-LDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFL-VSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPI 643
            L GK A++TG   GIG  I+ +FGK   +V +         D  +  ++  G KAV  E DV ++E  + ++++  EHFG LD++VN +  N +     ++S   ++ V+D++  GTF     AL ++ K            +LNIS+          +           +T  LAL + AD  IRVN IAPG I
Sbjct:    5 LTGKTAIVTGSSKGIGKAIAERFGKEKMNVVVNYHSDPSGADETLEIIKQNGGKAVSVEADVSKEEGIQALLDTALEHFGTLDVMVNNSGFNGVEAMPHEMSLEDWQRVIDVNVTGTFLGAKAALNHMMK------NNIKGNVLNISSVHQQIPRPVNVQYSTSKGGIKMMTETLALNY-ADKGIRVNAIAPGTI 192          
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: DHG2_BACME (Glucose 1-dehydrogenase 2 OS=Bacillus megaterium GN=gdhII PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.653e-16
Identity = 61/199 (30.65%), Postives = 97/199 (48.74%), Query Frame = 2
Query:   65 LKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSA-LRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASW-YQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTP 655
            LK KV ++TGG  G+G  ++ +FG+  + V +  R  +     V   +   G +A+   GDV ++E    +VE+  + FG LD+++N A     V + +LS   +  V+D +  G F    EA+KY  +            ++N+S ++H    W   +H          +T  LALE+ A   IRVN I PG I DTP
Sbjct:    5 LKDKVVVVTGGSKGLGRAMAVRFGQEQSKVVVNYRSNEEEALEVKKEIEEAGGQAIIVRGDVTKEEDVVNLVETAVKEFGSLDVMINNAGVENPVPSHELSLENWNQVIDTNLTGAFLGSREAIKYFVE------NDIKGNVINMS-SVHEMIPWPLFVHYAASKGGMKLMTETLALEY-APKGIRVNNIGPGAI-DTP 194          
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: GS39_BACSU (General stress protein 39 OS=Bacillus subtilis GN=ydaD PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 4.772e-16
Identity = 64/198 (32.32%), Postives = 90/198 (45.45%), Query Frame = 2
Query:   56 ADILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGR-RKQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNF-LVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPI 643
            AD LKGKVALITGG SGIG  +S  + K GA +AI+ +   +  +     +   G+K +   GDV  +E   + VE T +  G LDILVN A       S +D++          +    F +  +A+ YLK              +     + YTA+   I+           TR +A     D  IRVN +APGPI
Sbjct:   37 ADKLKGKVALITGGDSGIGRAVSVAYAKEGADIAIVYKDEHEDAEETKKRVEQEGVKCLLIAGDVGEEEFCNEAVEKTVKELGGLDILVNNAGEQHPKESIKDITSEQLHRTFKTNFYSQFYLTKKAIDYLKPGSAIINTTSINPYVGNPTLIDYTATKGAIN---------AFTRTMAQALVKD-GIRVNAVAPGPI 224          
The following BLAST results are available for this feature:
BLAST of FC930741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
DHG_BACME5.636e-1729.27Glucose 1-dehydrogenase OS=Bacillus megaterium PE=... [more]
GRDH2_ARATH7.361e-1733.00Glucose and ribitol dehydrogenase homolog 2 OS=Ara... [more]
PECR_CAVPO9.614e-1729.61Peroxisomal trans-2-enoyl-CoA reductase OS=Cavia p... [more]
DHGA_BACME9.614e-1730.10Glucose 1-dehydrogenase A OS=Bacillus megaterium G... [more]
DHG4_BACME9.614e-1730.10Glucose 1-dehydrogenase 4 OS=Bacillus megaterium G... [more]
DHG3_BACME9.614e-1730.10Glucose 1-dehydrogenase 3 OS=Bacillus megaterium G... [more]
Y325_THEMA1.256e-1632.63Uncharacterized oxidoreductase TM_0325 OS=Thermoto... [more]
DHG2_BACSU1.256e-1630.77Glucose 1-dehydrogenase 2 OS=Bacillus subtilis GN=... [more]
DHG2_BACME3.653e-1630.65Glucose 1-dehydrogenase 2 OS=Bacillus megaterium G... [more]
GS39_BACSU4.772e-1632.32General stress protein 39 OS=Bacillus subtilis GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34010G08EF PostHarvC1 Citrus clementina cDNA clone C34010G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930741 ID=FC930741; Name=FC930741; organism=Citrus clementina; type=EST; length=677bp
GCAAAAGCGGTCAGATAAAGAAATAAGCAAAATGTCGTTGGAATCTCCGT
TCAAGGCCGATATATTGAAAGGCAAAGTCGCTTTGATCACAGGAGGTGGT
TCGGGAATTGGGTTTGAGATATCAACCCAATTCGGTAAACATGGAGCTTC
AGTTGCAATCATGGGACGTCGCAAGCAAGTCCTTGATGCTGCTGTTTCTG
CTCTTCGGTCTCTTGGAATCAAGGCTGTTGGCTTTGAAGGAGATGTTCGT
AGGCAGGAACATGCGAAAAAAGTTGTGGAATCAACTTTTGAGCATTTTGG
GAAGCTTGACATTCTTGTGAATGCTGCGGCCGGCAACTTTCTTGTATCAG
CTGAGGATTTGTCCCCTAATGGGTTTCGAACAGTTATGGATATTGATTCT
GTCGGCACATTCACAATGTGCCATGAAGCACTTAAATATCTTAAAAAAGG
TGGACCTGGGAGAAGCTCAGCTGGTGGTGGATCCATTTTGAACATTAGTG
CTACTTTACATTATACAGCTTCTTGGTACCAAATACATGTAGCTGCAGCC
AAGGCAGCTGTTGATGCCATTACCAGAAACTTGGCACTGGAATGGGGAGC
TGACTATGATATTCGAGTCAATGGAATTGCCCCAGGCCCCATCGGTGATA
CCCCGGGCATGAATAAACTTGCACCTG
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