FC930741

Overview
NameFC930741
Unique NameFC930741
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: DHG_BACSU (Glucose 1-dehydrogenase OS=Bacillus subtilis GN=gdh PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.772e-16
Identity = 64/205 (31.22%), Postives = 96/205 (46.83%), Query Frame = 2
Query:   65 LKGKVALITGGGSGIGFEISTQFGKHGASVAI-MGRRKQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASW-YQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLA 673
            LKGKV  ITG  SG+G  ++ +FGK  A V I     KQ  +     +   G +AV  +GDV ++E  K +V++  + FG LDI++N A     V + ++    +  V+  +  G F    EA+KY  +            ++N+S ++H    W   +H          +T  LALE+ A   IRVN I PG I       K A
Sbjct:    5 LKGKVVAITGAASGLGKAMAIRFGKEQAKVVINYYSNKQDPNEVKEEVIKAGGEAVVVQGDVTKEEDVKNIVQTAIKEFGTLDIMINNAGLENPVPSHEMPLKDWDKVIGTNLTGAFLGSREAIKYFVE------NDIKGNVINMS-SVHEVIPWPLFVHYAASKGGIKLMTETLALEY-APKGIRVNNIGPGAINTPINAEKFA 201          
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: YHDF_BACSU (Uncharacterized oxidoreductase yhdF OS=Bacillus subtilis GN=yhdF PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.063e-15
Identity = 66/200 (33.00%), Postives = 94/200 (47.00%), Query Frame = 2
Query:   65 LKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQV-LDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGN------FLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPI 643
            LKGKVA+ITGG SGIG   +  F K GA ++I+   +    +     +    ++ +   GDV  + H ++ V+ T +HFGKLDILVN AA          +S E L    FRT    +    F M  +AL +L++            I+N ++   Y      I            TR++A    AD  IRVN +APGPI
Sbjct:   43 LKGKVAIITGGDSGIGRAAAIAFAKEGADISILYLDEHSDAEETRKRIEKENVRCLLIPGDVGDENHCEQAVQQTVDHFGKLDILVNNAAEQHPQDSILNISTEQLEKT-FRT----NIFSMFHMTKKALPHLQE---------GCAIINTTSITAYEGDTALIDYSSTKGAIVSFTRSMAKSL-ADKGIRVNAVAPGPI 227          
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: GRDH1_ARATH (Glucose and ribitol dehydrogenase homolog 1 OS=Arabidopsis thaliana GN=At1g54870 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.890e-15
Identity = 62/201 (30.85%), Postives = 96/201 (47.76%), Query Frame = 2
Query:   65 LKGKVALITGGGSGIGFEISTQFGKHGASVA---IMGRRKQVLDAAVSALRSL----GIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSA-EDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPI 643
            L+GKVALITGG SGIG  +   F   GA+VA   + G+ ++     +  L+ +      + +    D+   E+ K+VV+     FG++D+L+N AA  +  S  E++       V   +    F +   ALK++K+                ++ L YTA+   I            TR LAL+  A+  IRVNG+APGPI
Sbjct:   35 LRGKVALITGGDSGIGRAVGYCFASEGATVAFTYVKGQEEKDAQETLQMLKEVKTSDSKEPIAIPTDLGFDENCKRVVDEVVNAFGRIDVLINNAAEQYESSTIEEIDEPRLERVFRTNIFSYFFLTRHALKHMKEGSSIINTTSVNAYKGNASLLDYTATKGAI---------VAFTRGLALQL-AEKGIRVNGVAPGPI 225          
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: GRDH_DAUCA (Glucose and ribitol dehydrogenase OS=Daucus carota GN=CAISE5 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.535e-14
Identity = 63/204 (30.88%), Postives = 92/204 (45.10%), Query Frame = 2
Query:   56 ADILKGKVALITGGGSGIGFEISTQFGKHGASVA---IMGRRKQVLDAAVSALR----SLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVS-AEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPI 643
            A+ L+GKVAL+TGG SGIG  +   F   GA+VA   + G   +  +  +  LR    S     +    D+   ++ KKVV+     FG +D+LVN AA  +  S  ED+       V   +    F M   ALK++++                +  L YTA+   I            TR L+L+      IRVNG+APGP+
Sbjct:   36 ANKLQGKVALVTGGDSGIGRSVCYHFALEGATVAFTFVKGHEDKDANETLELLRKAKSSDAKDPIAIAADLGFDDNCKKVVDQVVNAFGSIDVLVNNAAEQYKASTVEDIDEERLERVFRTNIFAYFFMARHALKHMREGSTIINTTSINAYKGNAKLLDYTATKGAI---------VAFTRGLSLQL-ISKGIRVNGVAPGPV 229          
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: STCU_EMENI (Versicolorin reductase OS=Emericella nidulans GN=stcU PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.005e-14
Identity = 57/194 (29.38%), Postives = 89/194 (45.88%), Query Frame = 2
Query:   65 LKGKVALITGGGSGIGFEISTQFGKHGASVAI-MGRRKQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPI 643
            L GKVAL+TG G GIG  I+   G+ GA V +     ++  +  V  ++S G  A+  + DV   +   K+++   EHFG LDI+ + A        +D++P+ F  V  +++ G F +  EA ++L++            IL  S T                       R LA++ G D  I VN +APG I
Sbjct:    9 LDGKVALVTGAGRGIGAAIAVALGQRGAKVVVNYANSREAAEKVVDEIKSNGSDAISIQADVGDPDAVTKLMDQAVEHFGYLDIVSSNAGIVSFGHVKDVTPDEFDRVFRVNTRGQFFVAREAYRHLRE--------GGRIILTSSNTASVKGVPRHAVYSGSKGAIDTFVRCLAIDCG-DKKITVNAVAPGAI 193          
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: TODD_PSEP1 (Cis-toluene dihydrodiol dehydrogenase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=todD PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.420e-14
Identity = 70/210 (33.33%), Postives = 97/210 (46.19%), Query Frame = 2
Query:   65 LKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRSL-GIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILV-NAAAGNFLVS----AEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPI--GDTPGMNKL 670
            L+G+VAL+TGGG+G+G  I  ++   GA VA++ +      A + ALR L G   VG EGDVR  +  ++ V    E FGKLD LV NA   ++L       +DL    F  + +++  G       AL  L +            I  +S    Y      ++          I + LA EWG    IRVNGIAPG I   D  G+  L
Sbjct:    3 LEGEVALVTGGGAGLGRAIVDRYVAEGARVAVLDKSA----AGLEALRKLHGDAIVGVEGDVRSLDSHREAVARCVEAFGKLDCLVGNAGVWDYLTQLVDIPDDLISEAFEEMFEVNVKGYILAAKAALPALYQ-------SKGSAIFTVSNAGFYPGGGGVLYTAGKHAVIGLI-KQLAHEWGP--RIRVNGIAPGGILGSDLRGLKSL 198          
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: BNZE_PSEPU (Cis-1,2-dihydrobenzene-1,2-diol dehydrogenase OS=Pseudomonas putida GN=bnzE PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.420e-14
Identity = 70/210 (33.33%), Postives = 97/210 (46.19%), Query Frame = 2
Query:   65 LKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRSL-GIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILV-NAAAGNFLVS----AEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPI--GDTPGMNKL 670
            L+G+VAL+TGGG+G+G  I  ++   GA VA++ +      A + ALR L G   VG EGDVR  +  ++ V    E FGKLD LV NA   ++L       +DL    F  + +++  G       AL  L +            I  +S    Y      ++          I + LA EWG    IRVNGIAPG I   D  G+  L
Sbjct:    3 LEGEVALVTGGGAGLGRAIVDRYVAEGARVAVLDKSA----AGLEALRKLHGDAIVGVEGDVRSLDSHREAVARCVEAFGKLDCLVGNAGVWDYLTQLVDIPDDLISEAFEEMFEVNVKGYILAAKAALPALYQ-------SKGSAIFTVSNAGFYPGGGGVLYTAGKHAVIGLI-KQLAHEWGP--RIRVNGIAPGGILGSDLRGLKSL 198          
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: Y182_METEA (Uncharacterized oxidoreductase MexAM1_META1p0182 OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=MexAM1_META1p0182 PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.466e-14
Identity = 42/127 (33.07%), Postives = 70/127 (55.12%), Query Frame = 2
Query:   65 LKGKVALITGGGSGIGFEISTQFGKHGASVAI-MGRRKQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYL 442
            L+GKVA++TG   GIG  I+    K GA+V +     K   DA V A+ + G KA+  + DV +   A+ +VE+  + FG+LD+LVN +      + E+++   +R + D++ +G       A K+L
Sbjct:    4 LEGKVAVVTGASKGIGAAIAKALAKDGAAVVVNYASSKAGADAVVEAITAAGGKAIAVQADVSQAVQARGLVEAAVQQFGRLDVLVNNSGVYEFAAIEEVTEEHYRRIFDVNVLGVLLATQAASKHL 130          
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: DHB14_HUMAN (17-beta-hydroxysteroid dehydrogenase 14 OS=Homo sapiens GN=HSD17B14 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.618e-14
Identity = 64/202 (31.68%), Postives = 98/202 (48.51%), Query Frame = 2
Query:   71 GKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHFGKLDILVNAAAGNFLVSA-EDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKLA 673
            GKV ++TGGG GIG  I   F   GA V I  +     ++   AL      AV    DV +++  K +V  T   FG+LD +VN A  +      E+ S  GFR +++++ +GT+T+   AL YL+K            ++NIS+ +        +           +T+ LAL+  + Y +RVN I+PG I  TP   +LA
Sbjct:    9 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKD----ESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRK--------SQGNVINISSLVGAIGQAQAVPYVATKGAVTAMTKALALD-ESPYGVRVNCISPGNIW-TPLWEELA 196          
BLAST of FC930741 vs. ExPASy Swiss-Prot
Match: TRN2_HYONI (Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.697e-13
Identity = 58/194 (29.90%), Postives = 90/194 (46.39%), Query Frame = 2
Query:   65 LKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFEHF-GKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPI 643
            L+G  AL+TGG  GIG+ I  +    GASV    R ++ LD  ++  RS G        D+  +   ++ +++   HF GKL+ILVN A       A+D +   +  +M I+    + +   A  +LK             ++ IS+    +A  Y+            +TR LA EW  D +IRVNG+ PG I
Sbjct:    7 LEGCTALVTGGSRGIGYGIVEELANLGASVYTCSRNQKELDECLTQWRSKGFNVEASVCDLSSRSEREEFMKTVSNHFHGKLNILVNNAGIVIYKEAKDYTMEDYSHIMSINFEAAYHLSVLAHPFLK-------ASERGNVVFISSISGASALPYEAVYGATKGAMDQLTRCLAFEWAKD-NIRVNGVGPGVI 192          
The following BLAST results are available for this feature:
BLAST of FC930741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
DHG_BACSU4.772e-1631.22Glucose 1-dehydrogenase OS=Bacillus subtilis GN=gd... [more]
YHDF_BACSU1.063e-1533.00Uncharacterized oxidoreductase yhdF OS=Bacillus su... [more]
GRDH1_ARATH6.890e-1530.85Glucose and ribitol dehydrogenase homolog 1 OS=Ara... [more]
GRDH_DAUCA1.535e-1430.88Glucose and ribitol dehydrogenase OS=Daucus carota... [more]
STCU_EMENI2.005e-1429.38Versicolorin reductase OS=Emericella nidulans GN=s... [more]
TODD_PSEP13.420e-1433.33Cis-toluene dihydrodiol dehydrogenase OS=Pseudomon... [more]
BNZE_PSEPU3.420e-1433.33Cis-1,2-dihydrobenzene-1,2-diol dehydrogenase OS=P... [more]
Y182_METEA4.466e-1433.07Uncharacterized oxidoreductase MexAM1_META1p0182 O... [more]
DHB14_HUMAN7.618e-1431.6817-beta-hydroxysteroid dehydrogenase 14 OS=Homo sa... [more]
TRN2_HYONI1.697e-1329.90Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 P... [more]

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Properties
Property NameValue
Genbank descriptionC34010G08EF PostHarvC1 Citrus clementina cDNA clone C34010G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930741 ID=FC930741; Name=FC930741; organism=Citrus clementina; type=EST; length=677bp
GCAAAAGCGGTCAGATAAAGAAATAAGCAAAATGTCGTTGGAATCTCCGT
TCAAGGCCGATATATTGAAAGGCAAAGTCGCTTTGATCACAGGAGGTGGT
TCGGGAATTGGGTTTGAGATATCAACCCAATTCGGTAAACATGGAGCTTC
AGTTGCAATCATGGGACGTCGCAAGCAAGTCCTTGATGCTGCTGTTTCTG
CTCTTCGGTCTCTTGGAATCAAGGCTGTTGGCTTTGAAGGAGATGTTCGT
AGGCAGGAACATGCGAAAAAAGTTGTGGAATCAACTTTTGAGCATTTTGG
GAAGCTTGACATTCTTGTGAATGCTGCGGCCGGCAACTTTCTTGTATCAG
CTGAGGATTTGTCCCCTAATGGGTTTCGAACAGTTATGGATATTGATTCT
GTCGGCACATTCACAATGTGCCATGAAGCACTTAAATATCTTAAAAAAGG
TGGACCTGGGAGAAGCTCAGCTGGTGGTGGATCCATTTTGAACATTAGTG
CTACTTTACATTATACAGCTTCTTGGTACCAAATACATGTAGCTGCAGCC
AAGGCAGCTGTTGATGCCATTACCAGAAACTTGGCACTGGAATGGGGAGC
TGACTATGATATTCGAGTCAATGGAATTGCCCCAGGCCCCATCGGTGATA
CCCCGGGCATGAATAAACTTGCACCTG
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