FC930747

Overview
NameFC930747
Unique NameFC930747
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930747_ssr51 microsatellite FC930747_ssr51:51..65. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15125 contig Ccv1_Contig15125:1..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930747 vs. ExPASy Swiss-Prot
Match: PP1B_RABIT (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Oryctolagus cuniculus GN=PPP1CB PE=1 SV=3)

HSP 1 Score: 283.493 bits (724), Expect = 7.686e-76
Identity = 128/164 (78.05%), Postives = 149/164 (90.85%), Query Frame = 2
Query:  194 LDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERYSAC 682
            +D +I RLLEVRG +PGK VQ++E+E+R LC+ S+ IFL QP LLE+EAP+KICGDIHGQY+DLLRLFEYGG PP +NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRRFN++LWK FTDCFNCLP+AA++DE+   C
Sbjct:    8 VDSLITRLLEVRGCRPGKIVQMTEAEVRGLCIKSREIFLSQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNIKLWKTFTDCFNCLPIAAIVDEKIFCC 171          
BLAST of FC930747 vs. ExPASy Swiss-Prot
Match: PP1B_PONAB (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Pongo abelii GN=PPP1CB PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 7.686e-76
Identity = 128/164 (78.05%), Postives = 149/164 (90.85%), Query Frame = 2
Query:  194 LDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERYSAC 682
            +D +I RLLEVRG +PGK VQ++E+E+R LC+ S+ IFL QP LLE+EAP+KICGDIHGQY+DLLRLFEYGG PP +NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRRFN++LWK FTDCFNCLP+AA++DE+   C
Sbjct:    8 VDSLITRLLEVRGCRPGKIVQMTEAEVRGLCIKSREIFLSQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNIKLWKTFTDCFNCLPIAAIVDEKIFCC 171          
BLAST of FC930747 vs. ExPASy Swiss-Prot
Match: PP1B_PIG (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Sus scrofa GN=PPP1CB PE=1 SV=3)

HSP 1 Score: 283.493 bits (724), Expect = 7.686e-76
Identity = 128/164 (78.05%), Postives = 149/164 (90.85%), Query Frame = 2
Query:  194 LDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERYSAC 682
            +D +I RLLEVRG +PGK VQ++E+E+R LC+ S+ IFL QP LLE+EAP+KICGDIHGQY+DLLRLFEYGG PP +NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRRFN++LWK FTDCFNCLP+AA++DE+   C
Sbjct:    8 VDSLITRLLEVRGCRPGKIVQMTEAEVRGLCIKSREIFLSQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNIKLWKTFTDCFNCLPIAAIVDEKIFCC 171          
BLAST of FC930747 vs. ExPASy Swiss-Prot
Match: PP1B_MOUSE (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Mus musculus GN=Ppp1cb PE=1 SV=3)

HSP 1 Score: 283.493 bits (724), Expect = 7.686e-76
Identity = 128/164 (78.05%), Postives = 149/164 (90.85%), Query Frame = 2
Query:  194 LDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERYSAC 682
            +D +I RLLEVRG +PGK VQ++E+E+R LC+ S+ IFL QP LLE+EAP+KICGDIHGQY+DLLRLFEYGG PP +NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRRFN++LWK FTDCFNCLP+AA++DE+   C
Sbjct:    8 VDSLITRLLEVRGCRPGKIVQMTEAEVRGLCIKSREIFLSQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNIKLWKTFTDCFNCLPIAAIVDEKIFCC 171          
BLAST of FC930747 vs. ExPASy Swiss-Prot
Match: PP1B_HUMAN (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Homo sapiens GN=PPP1CB PE=1 SV=3)

HSP 1 Score: 283.493 bits (724), Expect = 7.686e-76
Identity = 128/164 (78.05%), Postives = 149/164 (90.85%), Query Frame = 2
Query:  194 LDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERYSAC 682
            +D +I RLLEVRG +PGK VQ++E+E+R LC+ S+ IFL QP LLE+EAP+KICGDIHGQY+DLLRLFEYGG PP +NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRRFN++LWK FTDCFNCLP+AA++DE+   C
Sbjct:    8 VDSLITRLLEVRGCRPGKIVQMTEAEVRGLCIKSREIFLSQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNIKLWKTFTDCFNCLPIAAIVDEKIFCC 171          
BLAST of FC930747 vs. ExPASy Swiss-Prot
Match: PP1B_CHICK (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Gallus gallus GN=PPP1CB PE=1 SV=3)

HSP 1 Score: 283.493 bits (724), Expect = 7.686e-76
Identity = 128/164 (78.05%), Postives = 149/164 (90.85%), Query Frame = 2
Query:  194 LDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERYSAC 682
            +D +I RLLEVRG +PGK VQ++E+E+R LC+ S+ IFL QP LLE+EAP+KICGDIHGQY+DLLRLFEYGG PP +NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRRFN++LWK FTDCFNCLP+AA++DE+   C
Sbjct:    8 VDSLITRLLEVRGCRPGKIVQMTEAEVRGLCIKSREIFLSQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNIKLWKTFTDCFNCLPIAAIVDEKIFCC 171          
BLAST of FC930747 vs. ExPASy Swiss-Prot
Match: PP1B_CANFA (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Canis familiaris GN=PPP1CB PE=2 SV=3)

HSP 1 Score: 283.493 bits (724), Expect = 7.686e-76
Identity = 128/164 (78.05%), Postives = 149/164 (90.85%), Query Frame = 2
Query:  194 LDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERYSAC 682
            +D +I RLLEVRG +PGK VQ++E+E+R LC+ S+ IFL QP LLE+EAP+KICGDIHGQY+DLLRLFEYGG PP +NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRRFN++LWK FTDCFNCLP+AA++DE+   C
Sbjct:    8 VDSLITRLLEVRGCRPGKIVQMTEAEVRGLCIKSREIFLSQPILLELEAPLKICGDIHGQYADLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNIKLWKTFTDCFNCLPIAAIVDEKIFCC 171          
BLAST of FC930747 vs. ExPASy Swiss-Prot
Match: PP1B_BOVIN (Serine/threonine-protein phosphatase PP1-beta catalytic subunit OS=Bos taurus GN=PPP1CB PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 7.686e-76
Identity = 128/164 (78.05%), Postives = 149/164 (90.85%), Query Frame = 2
Query:  194 LDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERYSAC 682
            +D +I RLLEVRG +PGK VQ++E+E+R LC+ S+ IFL QP LLE+EAP+KICGDIHGQY+DLLRLFEYGG PP +NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECAS+NR+YGFYDECKRRFN++LWK FTDCFNCLP+AA++DE+   C
Sbjct:    8 VDSLITRLLEVRGCRPGKIVQMTEAEVRGLCIKSREIFLSQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNIKLWKTFTDCFNCLPIAAIVDEKIFCC 171          
BLAST of FC930747 vs. ExPASy Swiss-Prot
Match: PP1_MEDVA (Serine/threonine-protein phosphatase PP1 OS=Medicago varia GN=PP1 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 7.793e-76
Identity = 128/165 (77.58%), Postives = 148/165 (89.70%), Query Frame = 2
Query:  179 MDPAVLDGVIRRLLEVR-GKPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDER 670
            MD  VLD +I++L+  + G+  KQV L+E++IRQLC  +K IFL QPNLLE+EAPIKICGD+HGQ+SDLLRLFEYGG PP +NYLFLGDYVDRGKQS+ETICLLLAYKIKY ENFFLLRGNHECAS+NR+YGFYDECKRR+NVRLWK FTDCFNCLPVAAL+DE+
Sbjct:    1 MDDTVLDDIIKKLVSAKNGRTTKQVHLTEADIRQLCTSAKEIFLSQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKIKYKENFFLLRGNHECASINRIYGFYDECKRRYNVRLWKTFTDCFNCLPVAALVDEK 165          

HSP 2 Score: 25.7942 bits (55), Expect = 7.793e-76
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 1
Query:  667 KILCMHGGLS 696
            KILCMHGGLS
Sbjct:  165 KILCMHGGLS 174          
BLAST of FC930747 vs. ExPASy Swiss-Prot
Match: PP11_DROME (Serine/threonine-protein phosphatase alpha-1 isoform OS=Drosophila melanogaster GN=Pp1alpha-96A PE=1 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.004e-75
Identity = 131/164 (79.88%), Postives = 146/164 (89.02%), Query Frame = 2
Query:  194 LDGVIRRLLEVRG-KPGKQVQLSESEIRQLCVVSKGIFLRQPNLLEIEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRVYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDERYSAC 682
            +D +I RLLEVRG +PGK VQLSESEIR LC+ S+ IFL QP LLE+EAP+KICGDIHGQY DLLRLFEYGG PP SNYLFLGDYVDRGKQSLETICLLLAYKIKY ENFFLLRGNHECAS+NR+YGFYDECKRR+ ++LWK FTDCFNCLPVAA++DE+   C
Sbjct:    7 IDSIISRLLEVRGARPGKNVQLSESEIRSLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYAENFFLLRGNHECASINRIYGFYDECKRRYTIKLWKTFTDCFNCLPVAAIVDEKIFCC 170          
The following BLAST results are available for this feature:
BLAST of FC930747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PP1B_RABIT7.686e-7678.05Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_PONAB7.686e-7678.05Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_PIG7.686e-7678.05Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_MOUSE7.686e-7678.05Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_HUMAN7.686e-7678.05Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_CHICK7.686e-7678.05Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_CANFA7.686e-7678.05Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1B_BOVIN7.686e-7678.05Serine/threonine-protein phosphatase PP1-beta cata... [more]
PP1_MEDVA7.793e-7677.58Serine/threonine-protein phosphatase PP1 OS=Medica... [more]
PP11_DROME1.004e-7579.88Serine/threonine-protein phosphatase alpha-1 isofo... [more]

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Properties
Property NameValue
Genbank descriptionC34010H02EF PostHarvC1 Citrus clementina cDNA clone C34010H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930747 ID=FC930747; Name=FC930747; organism=Citrus clementina; type=EST; length=710bp
AATTCTAACTCACCGAGGATGCTCCGTTCTTCTTTATTCTTCTTTACCTT
TTCTTCTTCTTCTTCTTTACTTTGTTCTCTCCTTCTTTTAAGATATTCTT
GAGATTGAATTCGGAGTGGAAACACAAAAAAGAAGAGGGAAGGGAGAAGA
GAAGAAGAGTGGTGTGAGAGTTCAAGAAATGGATCCTGCTGTTCTTGACG
GTGTGATCAGGAGGCTTCTTGAAGTCAGAGGCAAACCAGGGAAGCAAGTG
CAGTTATCTGAGTCTGAGATTAGGCAGCTTTGTGTTGTCTCTAAGGGTAT
TTTCTTGAGGCAGCCCAACCTTTTAGAGATTGAAGCTCCTATCAAGATCT
GTGGAGACATTCATGGTCAGTATTCTGATCTTCTGAGGCTTTTTGAATAT
GGTGGGTTACCTCCTCGTTCCAATTACTTATTCTTGGGGGATTATGTAGA
TCGTGGAAAACAAAGTCTGGAAACAATATGCCTTCTCCTTGCATATAAAA
TAAAATATCCGGAGAACTTTTTCCTTCTTAGGGGAAACCATGAATGTGCT
TCGGTAAACCGTGTCTATGGATTTTATGATGAGTGTAAACGGAGATTCAA
TGTCAGACTTTGGAAAATATTCACTGATTGTTTCAACTGCCTGCCCGTGG
CAGCTCTTATTGATGAAAGATACTCTGCATGCATGGTGGACTTTCCCTGA
CTTTGCACAT
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