FC930756

Overview
NameFC930756
Unique NameFC930756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.197e-63
Identity = 129/187 (68.98%), Postives = 148/187 (79.14%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSARE-ALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGY 627
            LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS  SM +TLERYQK +YG P+  +  +E  L  SS+ EYLKLKAR E LQR+QRNLLGE+LG L  KELE LE+QLD SL+ IRSTRTQ+MLD LT+LQ +EQ+L EANK L+++L E  Q++       A   GY
Sbjct:    8 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGQSMTRTLERYQKFSYGGPDTAIQNKENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRKLEESNQLHGQVWEHGATLLGY 194          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.950e-60
Identity = 120/168 (71.43%), Postives = 142/168 (84.52%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 573
            LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALI+FSNRGKLYEFCS+S M KTLERYQ+C+YG+ E +  ++E    SS QEYLKLKA+ + LQRS RNLLGE+LG L++KELE LE QLD SL+QIRS +TQ+MLD L +LQ KE++L E+N+ LK +L E
Sbjct:    8 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSCMNKTLERYQRCSYGSLETSQPSKET--ESSYQEYLKLKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTKLEE 173          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.466e-55
Identity = 116/185 (62.70%), Postives = 139/185 (75.14%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCG 624
            LKRIENKI+RQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS RG+L+EF +SS M KTLERY+ CNY       SA    ELS+ QEYLKLK R E LQ +QRNLLGE+L PL+ KELE LE Q+++SL  IRS++ Q +LD + EL+ KEQ L +ANK LK+++ E    N L +  S +D G
Sbjct:    8 LKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQETSGENMLHI--SCQDVG 190          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.466e-55
Identity = 116/185 (62.70%), Postives = 139/185 (75.14%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCG 624
            LKRIENKI+RQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS RG+L+EF +SS M KTLERY+ CNY       SA    ELS+ QEYLKLK R E LQ +QRNLLGE+L PL+ KELE LE Q+++SL  IRS++ Q +LD + EL+ KEQ L +ANK LK+++ E    N L +  S +D G
Sbjct:    8 LKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRKIQETSGENMLHI--SCQDVG 190          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.353e-53
Identity = 110/178 (61.80%), Postives = 135/178 (75.84%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLN 603
            LKRIENKI+RQVTFAKRRNGLLKKAYELS+LCDAEVALIIFS RG+L+EF SSS M KTLERY+ CNY + +      E     + QEYLKLK R E LQ +QRN+LGE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L+++L E    N L ++
Sbjct:    8 LKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENEI----NYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETSAENVLHMS 181          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.353e-53
Identity = 110/178 (61.80%), Postives = 135/178 (75.84%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLN 603
            LKRIENKI+RQVTFAKRRNGLLKKAYELS+LCDAEVALIIFS RG+L+EF SSS M KTLERY+ CNY + +      E     + QEYLKLK R E LQ +QRN+LGE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L+++L E    N L ++
Sbjct:    8 LKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENEI----NYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETSAENVLHMS 181          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 6.716e-53
Identity = 107/167 (64.07%), Postives = 137/167 (82.04%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS-SSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL 567
            LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAE+AL+IFSNRGKLYEFCSS S M +T+++Y+K +Y   +PN SA++  +    Q+YLKLK+R E LQ SQR+LLGEEL  ++  ELE LERQ+D SL+QIRST+ + MLD L++L+ KE++L E N+ L+++L
Sbjct:    8 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSSPSGMARTVDKYRKHSYATMDPNQSAKDLQD--KYQDYLKLKSRVEILQHSQRHLLGEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRKL 172          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.829e-50
Identity = 102/168 (60.71%), Postives = 134/168 (79.76%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 573
            L+RIENKI+RQVTFAKRRNGLLKKAYELS+LCDAEVAL++FS+ G+LY+F SSS+MLKTLERYQ+  Y + +      + ++ ++ QEY+ LKA  E LQ+SQRNLLGE+L PL + ELE LE Q+  +LKQIRS +TQ +LD L +L+ KEQ+L +AN+ LK++L E
Sbjct:    8 LQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQ-NNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKLDE 174          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.548e-49
Identity = 108/174 (62.07%), Postives = 133/174 (76.44%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL-MEGYQVN 588
            LKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEF  S+ + KTLERYQ C Y A + N +  E    S   E  KLKA++EALQR+QR+LLGE+LGPL+ KEL+ LE+QL+ +L Q R  +TQ M++ + EL+ KE+ L E N+ LK +L +EG   N
Sbjct:    8 LKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GSAGITKTLERYQHCCYNAQDSNNALSET--QSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLEVEGSTSN 178          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 1.110e-47
Identity = 101/166 (60.84%), Postives = 124/166 (74.70%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL 567
            LKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEF  S+ + KTLE+Y  C Y A   N +       S  QE  +LK + E LQRSQR++LGE+LGPL+ KEL+ LE+QL+ SL Q R  +TQ M++ + +L+ KE+ L E NK LK +L
Sbjct:    8 LKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GSAGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKL 172          
The following BLAST results are available for this feature:
BLAST of FC930756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MADS8_ORYSJ4.197e-6368.98MADS-box transcription factor 8 OS=Oryza sativa su... [more]
CMB1_DIACA1.950e-6071.43MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
MADS5_ORYSJ2.466e-5562.70MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI2.466e-5562.70MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS1_ORYSJ1.353e-5361.80MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS1_ORYSI1.353e-5361.80MADS-box transcription factor 1 OS=Oryza sativa su... [more]
AGL3_ARATH6.716e-5364.07Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
MAD34_ORYSJ1.829e-5060.71MADS-box transcription factor 34 OS=Oryza sativa s... [more]
MADS6_ORYSJ1.548e-4962.07MADS-box transcription factor 6 OS=Oryza sativa su... [more]
MAD17_ORYSJ1.110e-4760.84MADS-box transcription factor 17 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC34010H12EF PostHarvC1 Citrus clementina cDNA clone C34010H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930756 ID=FC930756; Name=FC930756; organism=Citrus clementina; type=EST; length=695bp
GAGATATATGAATATATAGTGATAGAAGAAGAAAGAAAGGAGAAGAAAAT
GGGAAGGGGTAGGGTTGAGTTGAAGAGGATAGAGAACAAGATCAACAGGC
AAGTGACCTTTGCAAAGAGAAGAAATGGCCTTTTGAAGAAAGCTTATGAG
CTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCCAATAG
AGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACGCTTG
AGAGGTACCAGAAGTGCAACTATGGAGCACCAGAACCGAATGTGTCCGCA
AGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAATATCTGAAGCTTAAAGC
ACGATATGAAGCCCTACAGAGATCCCAAAGGAATCTCCTTGGAGAAGAAC
TTGGCCCTCTAAACAGCAAAGAGCTTGAGTCACTTGAAAGGCAGCTTGAT
ATGTCATTGAAGCAGATCAGATCAACAAGAACTCAGTACATGCTGGATAC
CCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGCGAAGCAAATAAGA
CCCTCAAACAAAGGTTGATGGAGGGATACCAAGTGAACACACTTCAATTG
AATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACAGCTCACCTCAGG
GCGATACCTTCTTTCACGCCTTGGAATGTGAACCACATTGCAATT
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