FC930756

Overview
NameFC930756
Unique NameFC930756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: MEF2D_MOUSE (Myocyte-specific enhancer factor 2D OS=Mus musculus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREA 309
            ++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N    EP+ S   A
Sbjct:    8 IQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQY-ASTDMDKVLLKYTEYN----EPHESRTNA 82          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: MEF2D_HUMAN (Myocyte-specific enhancer factor 2D OS=Homo sapiens GN=MEF2D PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 41/80 (51.25%), Postives = 58/80 (72.50%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREA 309
            ++RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N    EP+ S   A
Sbjct:    8 IQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQY-ASTDMDKVLLKYTEYN----EPHESRTNA 82          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: MEF2A_RAT (Myocyte-specific enhancer factor 2A OS=Rattus norvegicus GN=Mef2a PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 40/89 (44.94%), Postives = 63/89 (70.79%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEY 336
            + RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y +  Y  P  + +  + +E  +++E+
Sbjct:    8 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTE--YNEPHESRTNSDIVEALNKKEH 93          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: MEF2A_PIG (Myocyte-specific enhancer factor 2A OS=Sus scrofa GN=MEF2A PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 40/89 (44.94%), Postives = 63/89 (70.79%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEY 336
            + RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y +  Y  P  + +  + +E  +++E+
Sbjct:    8 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTE--YNEPHESGTNSDIVEALNKKEH 93          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: MEF2A_HUMAN (Myocyte-specific enhancer factor 2A OS=Homo sapiens GN=MEF2A PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 40/89 (44.94%), Postives = 63/89 (70.79%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEY 336
            + RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y +  Y  P  + +  + +E  +++E+
Sbjct:    8 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTE--YNEPHESRTNSDIVEALNKKEH 93          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: MEF2A_BOVIN (Myocyte-specific enhancer factor 2A OS=Bos taurus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 40/89 (44.94%), Postives = 63/89 (70.79%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEY 336
            + RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y +  Y  P  + +  + +E  +++E+
Sbjct:    8 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTE--YNEPHESRTNSDIVEALNKKEH 93          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.874e-13
Identity = 35/63 (55.56%), Postives = 49/63 (77.78%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERY 258
            +++I N+ NRQ TF KR+NGL+KKA ELS+LCD E+A+I+FS+  KL+++ SS  M K L RY
Sbjct:   10 IEKISNERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQY-SSRDMDKLLIRY 71          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: MEF2C_PONAB (Myocyte-specific enhancer factor 2C OS=Pongo abelii GN=MEF2C PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 37/67 (55.22%), Postives = 52/67 (77.61%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 270
            + RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    8 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: MEF2C_MOUSE (Myocyte-specific enhancer factor 2C OS=Mus musculus GN=Mef2c PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 37/67 (55.22%), Postives = 52/67 (77.61%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 270
            + RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    8 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: MEF2C_HUMAN (Myocyte-specific enhancer factor 2C OS=Homo sapiens GN=MEF2C PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 37/67 (55.22%), Postives = 52/67 (77.61%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 270
            + RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    8 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKYTEYN 73          
The following BLAST results are available for this feature:
BLAST of FC930756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MEF2D_MOUSE3.983e-1351.25Myocyte-specific enhancer factor 2D OS=Mus musculu... [more]
MEF2D_HUMAN3.983e-1351.25Myocyte-specific enhancer factor 2D OS=Homo sapien... [more]
MEF2A_RAT3.983e-1344.94Myocyte-specific enhancer factor 2A OS=Rattus norv... [more]
MEF2A_PIG3.983e-1344.94Myocyte-specific enhancer factor 2A OS=Sus scrofa ... [more]
MEF2A_HUMAN3.983e-1344.94Myocyte-specific enhancer factor 2A OS=Homo sapien... [more]
MEF2A_BOVIN3.983e-1344.94Myocyte-specific enhancer factor 2A OS=Bos taurus ... [more]
SRFC_DICDI8.874e-1355.56Serum factor response C OS=Dictyostelium discoideu... [more]
MEF2C_PONAB1.514e-1255.22Myocyte-specific enhancer factor 2C OS=Pongo abeli... [more]
MEF2C_MOUSE1.514e-1255.22Myocyte-specific enhancer factor 2C OS=Mus musculu... [more]
MEF2C_HUMAN1.514e-1255.22Myocyte-specific enhancer factor 2C OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionC34010H12EF PostHarvC1 Citrus clementina cDNA clone C34010H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930756 ID=FC930756; Name=FC930756; organism=Citrus clementina; type=EST; length=695bp
GAGATATATGAATATATAGTGATAGAAGAAGAAAGAAAGGAGAAGAAAAT
GGGAAGGGGTAGGGTTGAGTTGAAGAGGATAGAGAACAAGATCAACAGGC
AAGTGACCTTTGCAAAGAGAAGAAATGGCCTTTTGAAGAAAGCTTATGAG
CTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCCAATAG
AGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACGCTTG
AGAGGTACCAGAAGTGCAACTATGGAGCACCAGAACCGAATGTGTCCGCA
AGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAATATCTGAAGCTTAAAGC
ACGATATGAAGCCCTACAGAGATCCCAAAGGAATCTCCTTGGAGAAGAAC
TTGGCCCTCTAAACAGCAAAGAGCTTGAGTCACTTGAAAGGCAGCTTGAT
ATGTCATTGAAGCAGATCAGATCAACAAGAACTCAGTACATGCTGGATAC
CCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGCGAAGCAAATAAGA
CCCTCAAACAAAGGTTGATGGAGGGATACCAAGTGAACACACTTCAATTG
AATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACAGCTCACCTCAGG
GCGATACCTTCTTTCACGCCTTGGAATGTGAACCACATTGCAATT
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