FC930756

Overview
NameFC930756
Unique NameFC930756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: MEF2C_BOVIN (Myocyte-specific enhancer factor 2C OS=Bos taurus GN=MEF2C PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 37/67 (55.22%), Postives = 52/67 (77.61%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 270
            + RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    8 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: MEF2A_XENLA (Myocyte-specific enhancer factor 2A homolog OS=Xenopus laevis GN=mef2a PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 37/67 (55.22%), Postives = 52/67 (77.61%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 270
            + RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    8 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: MEF2A_PONAB (Myocyte-specific enhancer factor 2A OS=Pongo abelii GN=MEF2A PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 37/67 (55.22%), Postives = 52/67 (77.61%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 270
            + RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    8 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: MEF2A_MOUSE (Myocyte-specific enhancer factor 2A OS=Mus musculus GN=Mef2a PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 37/67 (55.22%), Postives = 52/67 (77.61%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 270
            + RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    8 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: MEF2A_CHICK (Myocyte-specific enhancer factor 2A OS=Gallus gallus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 37/67 (55.22%), Postives = 52/67 (77.61%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 270
            + RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    8 ITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.752e-12
Identity = 38/82 (46.34%), Postives = 58/82 (70.73%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALE 315
            + RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ M + L +Y +  Y  P  + +  + LE
Sbjct:    8 ISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQY-ASTDMDRVLLKYTE--YSEPHESRTNTDILE 86          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: MEF2B_MOUSE (Myocyte-specific enhancer factor 2B OS=Mus musculus GN=Mef2b PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 37/82 (45.12%), Postives = 58/82 (70.73%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALE 315
            + RI ++ NRQVTF KR+ GL+KKAYELSVLCD ++ALIIF++  +L+++ +SS M + L +Y +  Y  P  + +  + L+
Sbjct:    8 ISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCDIALIIFNSAQRLFQY-ASSDMDRVLLKYTE--YSEPHESRTNADILQ 86          
The following BLAST results are available for this feature:
BLAST of FC930756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MEF2C_BOVIN1.514e-1255.22Myocyte-specific enhancer factor 2C OS=Bos taurus ... [more]
MEF2A_XENLA1.514e-1255.22Myocyte-specific enhancer factor 2A homolog OS=Xen... [more]
MEF2A_PONAB1.514e-1255.22Myocyte-specific enhancer factor 2A OS=Pongo abeli... [more]
MEF2A_MOUSE1.514e-1255.22Myocyte-specific enhancer factor 2A OS=Mus musculu... [more]
MEF2A_CHICK1.514e-1255.22Myocyte-specific enhancer factor 2A OS=Gallus gall... [more]
MEF2B_HUMAN5.752e-1246.34Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]
MEF2B_MOUSE2.186e-1145.12Myocyte-specific enhancer factor 2B OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionC34010H12EF PostHarvC1 Citrus clementina cDNA clone C34010H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930756 ID=FC930756; Name=FC930756; organism=Citrus clementina; type=EST; length=695bp
GAGATATATGAATATATAGTGATAGAAGAAGAAAGAAAGGAGAAGAAAAT
GGGAAGGGGTAGGGTTGAGTTGAAGAGGATAGAGAACAAGATCAACAGGC
AAGTGACCTTTGCAAAGAGAAGAAATGGCCTTTTGAAGAAAGCTTATGAG
CTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCCAATAG
AGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACGCTTG
AGAGGTACCAGAAGTGCAACTATGGAGCACCAGAACCGAATGTGTCCGCA
AGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAATATCTGAAGCTTAAAGC
ACGATATGAAGCCCTACAGAGATCCCAAAGGAATCTCCTTGGAGAAGAAC
TTGGCCCTCTAAACAGCAAAGAGCTTGAGTCACTTGAAAGGCAGCTTGAT
ATGTCATTGAAGCAGATCAGATCAACAAGAACTCAGTACATGCTGGATAC
CCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGCGAAGCAAATAAGA
CCCTCAAACAAAGGTTGATGGAGGGATACCAAGTGAACACACTTCAATTG
AATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACAGCTCACCTCAGG
GCGATACCTTCTTTCACGCCTTGGAATGTGAACCACATTGCAATT
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