FC930756

Overview
NameFC930756
Unique NameFC930756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 4.662e-46
Identity = 99/177 (55.93%), Postives = 133/177 (75.14%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQL 600
            LKRIENKINRQVTF+KRR+GLLKKA E+SVLCDAEVALIIFS +GKLYE+ + S M K LERY++ +Y A +  +SA    + +   EY KLKA+ E +Q+ Q++L+GE+L  LN KEL+ LE+QL+ SLK IRS ++Q ML+++ ELQ KE+ L E NK L++ L+E  +V   Q+
Sbjct:    8 LKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATDSCMDKILERYERYSY-AEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVEKQKVQKQQV 183          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.732e-45
Identity = 97/177 (54.80%), Postives = 132/177 (74.58%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQL 600
            LKRIEN INRQVTF+KRR+GLLKKA E+SVLCDAEVALIIFS +GKLY++ + S M K LERY++ +Y A +  +SA    + +   EY KLKA+ E +Q+ Q++L+GE+L  LN KEL+ LE+QL+ SLK IRS ++Q ML+++ ELQ KE+ L E NK L++ L+E  +V   Q+
Sbjct:    8 LKRIENTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDSCMDKILERYERYSY-AEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVEKQKVQKQQV 183          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 4.363e-44
Identity = 94/168 (55.95%), Postives = 127/168 (75.60%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 573
            LKRIENKINRQVTF+KRRNGLLKKA+E+SVLCDAEVA I+FS +GKLYE+ + S M K LERY++ +Y A +  +SA    E +   EY KLKA+ E +Q+  ++L+GE+L  LN KEL+ LE+QL+ SLK I S ++  ML++++ELQ KE+ L E NK L++ L+E
Sbjct:    8 LKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERYERYSY-AEKALISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIISRKSHLMLESISELQKKERSLQEENKALQKELVE 174          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.658e-43
Identity = 99/177 (55.93%), Postives = 126/177 (71.19%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL-MEGYQVNTLQ 597
            +KRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEF  S  +  T+ERY +C Y     N    E  + S  QE  KLK++YE+L R+ RNLLGE+LG +  KEL++LERQL+ +L   R  +TQ M++ + +L+ KE+ L + NK LK +   EG+   T Q
Sbjct:    8 MKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GSVGIESTIERYNRC-YNCSLSNNKPEETTQ-SWCQEVTKLKSKYESLVRTNRNLLGEDLGEMGVKELQALERQLEAALTATRQRKTQVMMEEMEDLRKKERQLGDINKQLKIKFETEGHAFKTFQ 181          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.166e-43
Identity = 92/173 (53.18%), Postives = 129/173 (74.57%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYG-----APEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 573
            LKRIENKINRQVTF+KRR GLLKKA+E+SVLCDAEVAL++FS++GKL+E+ + S M K LERY++ +Y      APE +V+   ++      EY +LKA+ E L+R+QR+ LGE+L  ++SKEL++LE+QLD +LK IRS + Q M D++ ELQ KE+ + E N  L +++ E
Sbjct:    8 LKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTNWSM------EYNRLKAKIELLERNQRHYLGEDLQAMSSKELQNLEQQLDTALKHIRSRKNQLMHDSINELQRKEKAIQEQNSMLSKQIKE 174          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 3.694e-43
Identity = 96/194 (49.48%), Postives = 135/194 (69.59%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYG-----APEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL------KQRLMEGYQVNTLQLNPSAED 618
            LKRIENKINRQVTF+KRR GLLKKA E+SVLCDAEV+LI+FS++GKL+E+ S S M K LERY++ +Y      AP+ +V+A    + +   EY +LKA+ E L+R+QR+ LGEEL P++ K+L++LE+QL+ +LK IRS + Q M ++L  LQ KE+ + E N  L      ++ ++   Q    QLN S +D
Sbjct:    8 LKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSESCMEKVLERYERYSYAERQLIAPDSHVNA----QTNWSMEYSRLKAKIELLERNQRHYLGEELEPMSLKDLQNLEQQLETALKHIRSRKNQLMNESLNHLQRKEKEIQEENSMLTKQIKERENILRTKQTQCEQLNRSVDD 197          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.229e-43
Identity = 96/186 (51.61%), Postives = 129/186 (69.35%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNY---GAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAED 618
            L+RIENKINRQVTF+KRRNGLLKKA+E+SVLCDA+VALI+FS +GKLYEF S SSM   LERYQ+ ++      EPN   +E    +   EY  LK++ +ALQ+SQR LLGE+L  L  KEL+ LE QL+ SLK IRS + Q + ++++ELQ KE+ L   N  L++ +    + N   +N + E+
Sbjct:    8 LRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQE----NWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNNAIINTNREE 189          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 8.229e-43
Identity = 96/186 (51.61%), Postives = 129/186 (69.35%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNY---GAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAED 618
            L+RIENKINRQVTF+KRRNGLLKKA+E+SVLCDA+VALI+FS +GKLYEF S SSM   LERYQ+ ++      EPN   +E    +   EY  LK++ +ALQ+SQR LLGE+L  L  KEL+ LE QL+ SLK IRS + Q + ++++ELQ KE+ L   N  L++ +    + N   +N + E+
Sbjct:    8 LRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQE----NWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNNAIINTNREE 189          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 4.084e-42
Identity = 89/173 (51.45%), Postives = 128/173 (73.99%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYG-----APEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 573
            LKRIENKINRQVTF+KRR GLLKKA+E+SVLCDAEVAL++FS++GKL+E+ + S M K LERY++ +Y      APE +V+   ++      EY +LKA+ E L+R+QR+ LGE+L  ++ KEL++LE+QLD +LK IR+ + Q M +++ ELQ KE+ + E N  L +++ E
Sbjct:    8 LKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTNWSM------EYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRTRKNQLMYESINELQKKEKAIQEQNSMLSKQIKE 174          
BLAST of FC930756 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.241e-40
Identity = 87/168 (51.79%), Postives = 123/168 (73.21%), Query Frame = 1
Query:   70 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 573
            LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEV LI+FS +GKL+E+ + S M + LERY++ ++ A +  V       +S   E+ KLKAR E LQR+Q++ +GE+L  L+ KEL++LE QLD +LK IRS + Q M ++++ LQ K++ L E N  L +++ E
Sbjct:    8 LKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERILERYERYSF-AEKQLVPTDHTSPVSWTLEHRKLKARLEVLQRNQKHYVGEDLESLSMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKKDRALQEQNNQLSKKVKE 174          
The following BLAST results are available for this feature:
BLAST of FC930756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MAD14_ORYSJ4.662e-4655.93MADS-box transcription factor 14 OS=Oryza sativa s... [more]
MAD14_ORYSI6.732e-4554.80MADS-box transcription factor 14 OS=Oryza sativa s... [more]
MAD15_ORYSJ4.363e-4455.95MADS-box transcription factor 15 OS=Oryza sativa s... [more]
AGL6_ARATH1.658e-4355.93Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]
AP1_SINAL2.166e-4353.18Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
CAL_ARATH3.694e-4349.48Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]
MAD18_ORYSJ8.229e-4351.61MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD18_ORYSI8.229e-4351.61MADS-box transcription factor 18 OS=Oryza sativa s... [more]
AP1_ARATH4.084e-4251.45Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
AGL8_SOLLC2.241e-4051.79Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]

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Properties
Property NameValue
Genbank descriptionC34010H12EF PostHarvC1 Citrus clementina cDNA clone C34010H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930756 ID=FC930756; Name=FC930756; organism=Citrus clementina; type=EST; length=695bp
GAGATATATGAATATATAGTGATAGAAGAAGAAAGAAAGGAGAAGAAAAT
GGGAAGGGGTAGGGTTGAGTTGAAGAGGATAGAGAACAAGATCAACAGGC
AAGTGACCTTTGCAAAGAGAAGAAATGGCCTTTTGAAGAAAGCTTATGAG
CTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCCAATAG
AGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACGCTTG
AGAGGTACCAGAAGTGCAACTATGGAGCACCAGAACCGAATGTGTCCGCA
AGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAATATCTGAAGCTTAAAGC
ACGATATGAAGCCCTACAGAGATCCCAAAGGAATCTCCTTGGAGAAGAAC
TTGGCCCTCTAAACAGCAAAGAGCTTGAGTCACTTGAAAGGCAGCTTGAT
ATGTCATTGAAGCAGATCAGATCAACAAGAACTCAGTACATGCTGGATAC
CCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGCGAAGCAAATAAGA
CCCTCAAACAAAGGTTGATGGAGGGATACCAAGTGAACACACTTCAATTG
AATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACAGCTCACCTCAGG
GCGATACCTTCTTTCACGCCTTGGAATGTGAACCACATTGCAATT
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