FC930758

Overview
NameFC930758
Unique NameFC930758
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_BOVIN (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Bos taurus GN=UQCRFS1 PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 3.970e-24
Identity = 51/111 (45.95%), Postives = 74/111 (66.67%), Query Frame = 1
Query:  373 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVKNPEWLVVVGVCTH 705
            +++ F+Y V        A   + ++ +FV SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+R RT+++I     V++  LRDPQ D ERVK PEW++++GVCTH
Sbjct:  109 ARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTH 219          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_PANTR (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Pan troglodytes GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.186e-24
Identity = 51/111 (45.95%), Postives = 74/111 (66.67%), Query Frame = 1
Query:  373 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVKNPEWLVVVGVCTH 705
            +++ F+Y V        A   +  + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+R RT+++I+    V+L  LRDPQ D +RVK PEW++++GVCTH
Sbjct:  109 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTH 219          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_PANPA (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Pan paniscus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.186e-24
Identity = 51/111 (45.95%), Postives = 74/111 (66.67%), Query Frame = 1
Query:  373 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVKNPEWLVVVGVCTH 705
            +++ F+Y V        A   +  + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+R RT+++I+    V+L  LRDPQ D +RVK PEW++++GVCTH
Sbjct:  109 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTH 219          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_HUMAN (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Homo sapiens GN=UQCRFS1 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.186e-24
Identity = 51/111 (45.95%), Postives = 74/111 (66.67%), Query Frame = 1
Query:  373 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVKNPEWLVVVGVCTH 705
            +++ F+Y V        A   +  + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+R RT+++I+    V+L  LRDPQ D +RVK PEW++++GVCTH
Sbjct:  109 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTH 219          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_GORGO (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Gorilla gorilla gorilla GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.186e-24
Identity = 51/111 (45.95%), Postives = 74/111 (66.67%), Query Frame = 1
Query:  373 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVKNPEWLVVVGVCTH 705
            +++ F+Y V        A   +  + +FV SMSAS DVLA+A +E+ LS I  G  +  KWRGKP+F+R RT+++I+    V+L  LRDPQ D +RVK PEW++++GVCTH
Sbjct:  109 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTH 219          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_RAT (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Rattus norvegicus GN=Uqcrfs1 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.773e-24
Identity = 51/111 (45.95%), Postives = 73/111 (65.77%), Query Frame = 1
Query:  373 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVKNPEWLVVVGVCTH 705
            +++ F+Y V        A   +  + +FV SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+R RT+++I     V++  LRDPQ D ERVK PEW++++GVCTH
Sbjct:  109 ARKGFSYLVTATTTVGVAYAAKNAVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTH 219          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_MOUSE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Mus musculus GN=Uqcrfs1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.845e-24
Identity = 50/111 (45.05%), Postives = 74/111 (66.67%), Query Frame = 1
Query:  373 SKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVKNPEWLVVVGVCTH 705
            +++ F+Y V        A   + ++ +FV SMSAS DVLAM+ +E+ LS I  G  +  KWRGKP+F+R RT+++I     V++  LRDPQ D +RVK PEW++++GVCTH
Sbjct:  109 ARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLDRVKKPEWVILIGVCTH 219          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_RHORU (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rhodospirillum rubrum GN=petA PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.155e-23
Identity = 58/123 (47.15%), Postives = 77/123 (62.60%), Query Frame = 1
Query:  337 EYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVKNPEWLVVVGVCTH 705
            E  H    PG  S R    F++ G   V A  + L +  F+  M+ + D LA+AS EVD+S+I  G  +TV WRGKPVF+R RT+++I +A  VD  SLRDPQ D  RV+  +WLV+VGVCTH
Sbjct:    3 EAEHTASTPGGESSRRD--FLIYGTTAVGAVGVALAVWPFIDFMNPAADTLALASTEVDVSAIAEGQAITVTWRGKPVFVRHRTQKEIVVARAVDPASLRDPQTDEARVQQAQWLVMVGVCTH 123          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_RICBR (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia bellii (strain RML369-C) GN=petA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.945e-19
Identity = 53/126 (42.06%), Postives = 74/126 (58.73%), Query Frame = 1
Query:  334 DEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILKFVLSMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVK--NPEWLVVVGVCTH 705
            D  N  +    D SK +   F++     V A      +   + S++ S DVLA++S+EVDLS+I  G TVTVKW+GKPVFI  RT + I  A  V +  L DP++D +RVK  +  WLV +G+CTH
Sbjct:    6 DTNNDNKVEFEDRSKTSRRDFMVLTASSVAAVGAACTLWPLINSLNPSADVLALSSIEVDLSNIAVGQTVTVKWQGKPVFITNRTPDKIAEARAVKMSELIDPEEDQDRVKAGHDNWLVTIGICTH 131          
BLAST of FC930758 vs. ExPASy Swiss-Prot
Match: UCRI_RICTY (Ubiquinol-cytochrome c reductase iron-sulfur subunit OS=Rickettsia typhi GN=petA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.493e-18
Identity = 45/83 (54.22%), Postives = 59/83 (71.08%), Query Frame = 1
Query:  463 SMSASKDVLAMASLEVDLSSIEPGSTVTVKWRGKPVFIRRRTEEDIKLANTVDLGSLRDPQQDAERVK--NPEWLVVVGVCTH 705
            S++ S DVLA++S+EVDLSSI  G TVTVKW+GKP+FI  RT + I  A  V +  L DP++D  RVK  +  WLV +G+CTH
Sbjct:   40 SLNPSTDVLALSSIEVDLSSIAIGQTVTVKWQGKPIFITNRTPDGIASARAVKMSELIDPEKDEVRVKAGHDNWLVTIGICTH 122          
The following BLAST results are available for this feature:
BLAST of FC930758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
UCRI_BOVIN3.970e-2445.95Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_PANTR5.186e-2445.95Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_PANPA5.186e-2445.95Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_HUMAN5.186e-2445.95Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_GORGO5.186e-2445.95Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_RAT6.773e-2445.95Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_MOUSE8.845e-2445.05Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_RHORU1.155e-2347.15Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICBR2.945e-1942.06Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]
UCRI_RICTY2.493e-1854.22Ubiquinol-cytochrome c reductase iron-sulfur subun... [more]

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Properties
Property NameValue
Genbank descriptionC34108G02EF PostHarvP1 Citrus clementina cDNA clone C34108G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930758 ID=FC930758; Name=FC930758; organism=Citrus clementina; type=EST; length=705bp
GACCAATCGCCATTTCGAAGAGATAATCAGAGAGAGATTTTGAAGATGTT
GAGGGTCGCGGCGAGAAGGCTCTTATCACCATCCTCATCATCGTCATTGA
GGCCCATCGCTTCGTCTCGCAATATAATTAACGGCGCCGATTCATCGTCC
TCCTCCAACGATGATTTCAGATCCAACGGCTTCTATGGCTCCGGATATCT
TGGACCTCAGTTTCAACTTCCTTGCCGAGGTTTTTCTTCTGAGTCACTGA
CACCAAGAAATGAAGAAAGCCTGGTTCCAGGTGTTCCAGCAACAGTGGCA
GCTGTTAAGAATCCCACTTCTAAGATAGTATATGATGAATACAATCATGA
ACGTTATCCTCCAGGTGACCCCAGCAAGCGGGCATTTGCCTACTTTGTCC
TGACTGGTGGTAGGTTTGTGTACGCTTCACTCATCCGTCTACTTATCCTT
AAATTCGTACTGAGCATGTCAGCGAGTAAGGATGTTCTTGCTATGGCCTC
TCTTGAGGTTGATCTGTCCAGCATTGAGCCAGGCAGCACAGTGACTGTTA
AGTGGCGGGGCAAGCCAGTTTTCATCAGACGTCGGACTGAGGAAGATATC
AAGCTGGCCAACACTGTTGATTTGGGATCTCTTCGTGATCCTCAGCAAGA
CGCTGAGAGGGTTAAAAACCCGGAGTGGCTTGTAGTTGTTGGGGTCTGCA
CACAT
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