FC930760

Overview
NameFC930760
Unique NameFC930760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length629
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15119 contig Ccv1_Contig15119:26..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_GEOLS (ATP-dependent Clp protease proteolytic subunit OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=clpP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.058e-11
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K RIV+LG      V +L++A+ L+L+ ED +K I+LYINS G        G  T   AI+D M Y+K P+ T+C+
Sbjct:   18 DIYSRLLKERIVFLGGEINDQVADLVIAQLLFLEAEDPDKDIHLYINSPG--------GVVTAGMAIFDTMNYIKAPVSTICI 92          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_CLOAB (ATP-dependent Clp protease proteolytic subunit OS=Clostridium acetobutylicum GN=clpP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.058e-11
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+R+++LG     +   L++A+ L+L+ ED +K IYLYINS G        G  T   AIYD M YVKP + T+C+
Sbjct:   19 DIYSRLLKDRVIFLGEEVNDTTASLVVAQLLFLESEDPDKDIYLYINSPG--------GSITSGMAIYDTMQYVKPDVSTICI 93          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_CALS8 (ATP-dependent Clp protease proteolytic subunit OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=clpP PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.058e-11
Identity = 37/83 (44.58%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RIV L       +  LI+A+ L+L+ ED +K IYLYINS G        G  T  FAIYD + Y+KP + T+CV
Sbjct:   20 DIYSRLLKDRIVILSGEITDDIASLIVAQLLFLEAEDPDKDIYLYINSPG--------GSVTAGFAIYDTIQYIKPDVSTICV 94          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_STACT (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus carnosus (strain TM300) GN=clpP PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.381e-11
Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RI+ LG +   +V   I+++ L+LQ +DAEK IYLYINS G        G  T  FAIYD + ++KP + T+C+
Sbjct:   19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICI 93          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_GEOSL (ATP-dependent Clp protease proteolytic subunit OS=Geobacter sulfurreducens GN=clpP PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.381e-11
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RI++LG      V  L++A+ L+L+ ED +K I+LYINS G        G  T   AIYD M Y+K P+ T+CV
Sbjct:   18 DIYSRLLKDRIIFLGGPVDDHVANLVIAQMLFLEAEDPDKDIHLYINSPG--------GVVTSGMAIYDTMQYIKAPVSTICV 92          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_GEOMG (ATP-dependent Clp protease proteolytic subunit OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=clpP PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.381e-11
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RI++LG      V  L++A+ L+L+ ED +K I+LYINS G        G  T   AIYD M Y+K P+ T+CV
Sbjct:   18 DIYSRLLKDRIIFLGGPIDDHVANLVIAQLLFLEAEDPDKDIHLYINSPG--------GVVTAGMAIYDTMQYIKAPVSTICV 92          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_STAS1 (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=clpP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.804e-11
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RI+ LG     +V   I+++ L+LQ +DAEK IYLYINS G        G  T  FAIYD + ++KP + T+C+
Sbjct:   19 DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPG--------GSVTAGFAIYDTIQHIKPDVQTICI 93          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_HAEPS (ATP-dependent Clp protease proteolytic subunit OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=clpP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.804e-11
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K RI++L       + +LI+A+ L+L+ ED EK IYLYINS G        G  T   AIYD M ++KP + TLC+
Sbjct:   19 DIYSRLLKERIIFLNGGVEDEMAKLIIAQMLFLEAEDPEKDIYLYINSPG--------GVVTAGLAIYDTMNFIKPDVSTLCM 93          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_MACCJ (ATP-dependent Clp protease proteolytic subunit OS=Macrococcus caseolyticus (strain JCSC5402) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RI+ LG +   +V   I+++ L+LQ +DAEK IYLYINS G        G  T   AIYD M ++KP + T+C+
Sbjct:   19 DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDAEKDIYLYINSPG--------GSVTAGMAIYDTMQHIKPDVQTICI 93          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_THEYD (ATP-dependent Clp protease proteolytic subunit OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.078e-11
Identity = 35/83 (42.17%), Postives = 49/83 (59.04%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RI+++G      V  +++A+ L+LQ ED EK I++YINS G        G  +   AIYD M YVKP I T C+
Sbjct:   19 DIYSRLLKDRIIFIGTEINDHVANVVIAQLLFLQTEDPEKDIHIYINSPG--------GMVSSGLAIYDTMQYVKPDIATYCI 93          
The following BLAST results are available for this feature:
BLAST of FC930760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CLPP_GEOLS1.058e-1142.17ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CLOAB1.058e-1142.17ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CALS81.058e-1144.58ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STACT1.381e-1143.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOSL1.381e-1143.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOMG1.381e-1143.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAS11.804e-1143.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_HAEPS1.804e-1143.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_MACCJ2.356e-1143.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEYD3.078e-1142.17ATP-dependent Clp protease proteolytic subunit OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34108G04EF PostHarvP1 Citrus clementina cDNA clone C34108G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930760 ID=FC930760; Name=FC930760; organism=Citrus clementina; type=EST; length=629bp
GAATCGTCAGCCTTTTCACTCTTGCTCTCTAACAACTCCGCTACCAAATG
GAAGTCGCCACCGCATCAGCGCCGATCTTCGGGCTCCGCACGCGCATGTT
AGCAACACCACCACGCACCTCTCCACGAACCGTAAATTGTAACCGAAACC
TATCCACCAGCTTCATCTCTCCATTCGCAAACGGCAGCGTTTCCTCCGAC
TTCTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGATTCATTCTG
CAAGTCCAAGCCTAGGAGCCCCGTCATCACCATGGTCATTCCTTTTACTA
GTGGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCTTATTTGTAC
AAGAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTCTGTCACAGA
GCTGATTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATGCTGAGAAGC
CCATTTACTTATACATAAACTCTACGGGAACAACCAAGGGTGTCGAGAAG
TTGGGTTATGAAACTGAGGCTTTTGCGATATATGATGTTATGGGTTATGT
CAAGCCGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGGGTGAGGCAG
CGCTTCTCTTGGGTGCCGGTGCCAAAGGA
back to top