FC930762

Overview
NameFC930762
Unique NameFC930762
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length772
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_XANOM (Methylthioribose-1-phosphate isomerase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=mtnA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.021e-23
Identity = 77/218 (35.32%), Postives = 117/218 (53.67%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYI-EAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            ++ + +   +L+LLDQRKLP    ++    S     AI  + VRG             +   ++ A  G AA     L   L  L ++RPTAVNL+ A  +++ ++  A A        ++A I   A+ +  +D+A N+ +G+ GA+ +          VLTHCNTGSLATAG+GTALGVIRA  ++  + + +  ETRP+ QG+RLT +EL  D I
Sbjct:   15 IRPLLWTGDALELLDQRKLPFVVEHVRCDTSDAVAEAIHSLAVRGAPAIGIAAGWGVALAARDIAADDGNAA--LQKLEPALLRLNAARPTAVNLAWALMRMRRVLGAAGAD-------WRAVIAREAQAIADEDLAANRHMGALGAALIA-----PGSGVLTHCNTGSLATAGFGTALGVIRAGMAQQRIAKVFAGETRPWLQGARLTVWELQQDGI 218          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_DESVM (Methylthioribose-1-phosphate isomerase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=mtnA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.021e-23
Identity = 81/213 (38.03%), Postives = 111/213 (52.11%), Query Frame = 1
Query:   34 SLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASF----LGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            +L LLDQR LP        R + D  +A++ MVVRG             +  +        AA+A       L   LE +  +RPTAVNL  A  +++++  K A  A  A  +     EA  I  +DD+  N+A+G +GA+ +     +   +V+THCN G+LATAGYGTALGVIR     G       +ETRPF QG+RLTA+EL  D IP
Sbjct:   13 ALILLDQRLLPTRQEDFVCRTTEDIVTALQVMVVRGAPAIGVTAAWGCVLAAYE-------AAEAGDHWHPVLDGLLERIAKARPTAVNLRWAVDRMRKVW-KTAGHAPFATLISLWESEARRIH-RDDIEINRAMGRHGAALI-----DEGDTVMTHCNAGALATAGYGTALGVIRGAVDAGKKISVIANETRPFLQGARLTAYELHEDHIP 211          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_ANAVT (Methylthioribose-1-phosphate isomerase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=mtnA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.021e-23
Identity = 76/219 (34.70%), Postives = 118/219 (53.88%), Query Frame = 1
Query:   16 ICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLE----YLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            + ++   + L+DQ +LP E   +EI  S +   AI+ M+VRG                  L A     ++   FL  KLE     L ++RPTAVNL  A +++ +   +   T ++   + +  ++ A+ +  +D+ T + IG  G + L      +K ++LTHCN G+LATAGYGTALGV+R+   EG LER +  ETRP  QG++LT +E V + IP
Sbjct:    5 VIWQNNCVLLIDQTRLPNEYAVVEIHRSEEMARAIQTMIVRGAPAIGVAAAYGMY-----LGAREIETSERQEFL-QKLEKVAQLLRATRPTAVNLFWAISRMLKTAYETLGTVAQ---IKENLLQTAQAINAEDLQTCQVIGDNGLAILPKT--PTKLTLLTHCNAGALATAGYGTALGVVRSAWREGRLERLFADETRPRLQGAKLTTWECVQEGIP 212          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: EI2B1_METTH (Putative translation initiation factor eIF-2B subunit 1 OS=Methanobacterium thermoautotrophicum GN=MTH_1872 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.021e-23
Identity = 79/223 (35.43%), Postives = 114/223 (51.12%), Query Frame = 1
Query:    4 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEY----LVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            ++++I ++ G L L+DQRKLP    Y   RD  D   AI+ MVVRG                  + A  G A   A   G+ +E     + +SRPTAVNL  A  +    + K+ +   EA +++            +D+ TN+AIG +GA  +++       +VLTHCN G+LA   YGTALGVIRA   +G      C ETRP  QG+RL+ +E+  + IP
Sbjct:    2 NMKTIEWKDGELVLIDQRKLPDSLEYFRCRDYRDVIYAIKNMVVRG-------------APAIGVTAAFGVAM--AELAGEDVEVAAEEIKASRPTAVNLFWAVDR----VMKSESPLDEAITMYM-----------EDMETNRAIGRHGAGLIEDG-----DTVLTHCNAGALACVDYGTALGVIRAAWDDGKRLTVICDETRPVGQGARLSVWEMQQEGIP 189          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_XANCP (Methylthioribose-1-phosphate isomerase OS=Xanthomonas campestris pv. campestris GN=mtnA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.333e-23
Identity = 74/217 (34.10%), Postives = 115/217 (53.00%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            ++ + +   +L+LLDQRKLP    ++    S     AI  + VRG             +    + A SG+  +A   L   L  L ++RPTAVNL+ A  +++ +++ A     +  +        A+ +  +D+A N+ +G+ GA  +          VLTHCNTGSLATAG+GTALGVIRA  ++  + + +  ETRP+ QG+RLT +EL  D I
Sbjct:   15 IRPLLWTGDALELLDQRKLPFVVEHVRCDSSDAVAEAIHSLAVRGAPAIGIAAGWGVVLAAREIAADSGS--EALQKLEPALLRLNAARPTAVNLAWALMRMRRVLAAAGPDWRDVLA------REAQAIADEDLAANRHMGALGAGLIA-----PGSGVLTHCNTGSLATAGFGTALGVIRAGMAQQRISKVFAGETRPWLQGARLTVWELQQDGI 218          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_XANCB (Methylthioribose-1-phosphate isomerase OS=Xanthomonas campestris pv. campestris (strain B100) GN=mtnA PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.333e-23
Identity = 74/217 (34.10%), Postives = 115/217 (53.00%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            ++ + +   +L+LLDQRKLP    ++    S     AI  + VRG             +    + A SG+  +A   L   L  L ++RPTAVNL+ A  +++ +++ A     +  +        A+ +  +D+A N+ +G+ GA  +          VLTHCNTGSLATAG+GTALGVIRA  ++  + + +  ETRP+ QG+RLT +EL  D I
Sbjct:   15 IRPLLWTGDALELLDQRKLPFVVEHVRCDSSDAVAEAIHSLAVRGAPAIGIAAGWGVVLAAREIAADSGS--EALQKLEPALLRLNAARPTAVNLAWALMRMRRVLAAAGPDWRDVLA------REAQAIADEDLAANRHMGALGAGLIA-----PGSGVLTHCNTGSLATAGFGTALGVIRAGMAQQRISKVFAGETRPWLQGARLTVWELQQDGI 218          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_XANC8 (Methylthioribose-1-phosphate isomerase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=mtnA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.333e-23
Identity = 74/217 (34.10%), Postives = 115/217 (53.00%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            ++ + +   +L+LLDQRKLP    ++    S     AI  + VRG             +    + A SG+  +A   L   L  L ++RPTAVNL+ A  +++ +++ A     +  +        A+ +  +D+A N+ +G+ GA  +          VLTHCNTGSLATAG+GTALGVIRA  ++  + + +  ETRP+ QG+RLT +EL  D I
Sbjct:   15 IRPLLWTGDALELLDQRKLPFVVEHVRCDSSDAVAEAIHSLAVRGAPAIGIAAGWGVVLAAREIAADSGS--EALQKLEPALLRLNAARPTAVNLAWALMRMRRVLAAAGPDWRDVLA------REAQAIADEDLAANRHMGALGAGLIA-----PGSGVLTHCNTGSLATAGFGTALGVIRAGMAQQRISKVFAGETRPWLQGARLTVWELQQDGI 218          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_AQUAE (Methylthioribose-1-phosphate isomerase OS=Aquifex aeolicus GN=mtnA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.333e-23
Identity = 79/222 (35.59%), Postives = 109/222 (49.10%), Query Frame = 1
Query:   22 YRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKL---------EYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            ++   L LLDQRKLP + ++LE++   +   AI+EM VRG                       G  A     LG K+         E L ++RPTA NL  A  ++ + + +      EA  +            K+D   NK +G  G+  +    K     VLTHCNTG+LATAG+GTALGVIR+ H  G     +  ETRP+ QG+RLTA+ELV + IP
Sbjct:  138 WKGDKLLLLDQRKLPHQEVWLELKTYEEVAKAIKEMAVRGAPAI-------------------GCTAAYGFVLGVKVQKEDPEKVYETLKNTRPTAYNLFWALDRMMKALKEGKDIEEEAKEIE-----------KEDYEANKRMGEIGSEIVPLNAK-----VLTHCNTGALATAGWGTALGVIRSAHYGGKNIFVWVDETRPYLQGARLTAWELVKESIP 324          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_THET2 (Methylthioribose-1-phosphate isomerase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=mtnA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.274e-23
Identity = 79/214 (36.92%), Postives = 105/214 (49.07%), Query Frame = 1
Query:   31 GSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEY----LVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            G   LLDQR+LP E +Y+ +R + +   AIR+MVVRG                  ++A  G     A   G+ LE     L +SRPTAVNL  A  +++      A +  EA  +++   E           T  AI  +GA  L  Q       VLTHCNTG LAT GYGTALG I   +  G +   +  ETRP+ QG+RLTA+EL    +P
Sbjct:   14 GVFWLLDQRRLPQEEVYVPVRTAREMAQAIRDMVVRG-------------APAIGVSAAFGMVL--AHLAGEDLEEADRRLRASRPTAVNLFHALDRMRPFWGDLAGSLLEARRIWREVEE-----------TEAAISRHGAQILWGQ-------VLTHCNTGPLATGGYGTALGAIVEAYRLGRVRHVWVDETRPYLQGARLTAYELQKAGVP 194          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_CHLSY (Methylthioribose-1-phosphate isomerase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=mtnA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.274e-23
Identity = 82/222 (36.94%), Postives = 115/222 (51.80%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEY---LVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEA-AEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            L+++ +   ++ L+DQRKLP     +   D A    AIR M VRG                  L A    A   ++ L + ++    L S RPTAVNL+ A +++   + +A A ASE     +  + A AE +  +D+A   AIG +GAS +       +  VLTHCN G LATAGYGTAL  IR   ++G     +  ETRPF QG+RLTA+EL+   IP
Sbjct:    3 LRTVWWENDAVCLIDQRKLPHTMEVVRCTDLAAVAYAIRSMQVRGAPAIGCTAAYGMA-----LVAQQSVALTPSALLTELVQAKATLDSQRPTAVNLAWATSRM---LRRAEAVASEGVEAIKHALHAEAEAIFAEDLAMCHAIGEHGASLIP-----PRGHVLTHCNAGGLATAGYGTALAPIRTAFAQGRPVHVFVDETRPFLQGARLTAWELLQAGIP 211          
The following BLAST results are available for this feature:
BLAST of FC930762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
MTNA_XANOM1.021e-2335.32Methylthioribose-1-phosphate isomerase OS=Xanthomo... [more]
MTNA_DESVM1.021e-2338.03Methylthioribose-1-phosphate isomerase OS=Desulfov... [more]
MTNA_ANAVT1.021e-2334.70Methylthioribose-1-phosphate isomerase OS=Anabaena... [more]
EI2B1_METTH1.021e-2335.43Putative translation initiation factor eIF-2B subu... [more]
MTNA_XANCP1.333e-2334.10Methylthioribose-1-phosphate isomerase OS=Xanthomo... [more]
MTNA_XANCB1.333e-2334.10Methylthioribose-1-phosphate isomerase OS=Xanthomo... [more]
MTNA_XANC81.333e-2334.10Methylthioribose-1-phosphate isomerase OS=Xanthomo... [more]
MTNA_AQUAE1.333e-2335.59Methylthioribose-1-phosphate isomerase OS=Aquifex ... [more]
MTNA_THET22.274e-2336.92Methylthioribose-1-phosphate isomerase OS=Thermus ... [more]
MTNA_CHLSY2.274e-2336.94Methylthioribose-1-phosphate isomerase OS=Chlorofl... [more]

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Properties
Property NameValue
Genbank descriptionC34108G06EF PostHarvP1 Citrus clementina cDNA clone C34108G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930762 ID=FC930762; Name=FC930762; organism=Citrus clementina; type=EST; length=772bp
AACTCTCTTCAGTCCATTTGCTACAGGCGTGGCTCCCTTCAGCTTCTCGA
CCAGAGAAAGCTTCCTCTGGAAACTATTTATTTGGAAATTCGCGATTCTG
CCGATGGATGGTCTGCAATACGGGAAATGGTGGTGCGGGGGGCGCCTGCC
ATTGCTATAGCAGCGGCACTTTCCCTGGCAGTGGAGGTGTTTAATTTGAA
TGCATTTAGTGGGACTGCTGCCGATGCAGCTTCATTTCTTGGCGATAAGT
TGGAATATCTTGTCTCTAGTCGACCGACTGCAGTGAATCTTTCAGATGCT
GCCGCAAAACTCAAAGAAATCATATCAAAGGCTGCCGCTACTGCTTCAGA
AGCCAATAGTGTATTTCAGGCCTACATAGAAGCTGCTGAAATTATGCTCA
AAGATGATGTTGCTACAAACAAAGCTATTGGTTCTTATGGGGCAAGTTTT
CTTCAGAACCAGCTCAAAAATTCTAAATTCTCTGTTCTTACTCATTGCAA
CACTGGCAGTCTTGCAACAGCTGGATATGGTACCGCCCTTGGTGTGATCC
GTGCACTTCATTCTGAGGGAGTGTTAGAAAGAGCTTATTGCTCTGAAACA
CGTCCATTCAACCAAGGATCTAGACTCACTGCTTTTGAGTTGGTACATGA
TCGCATACCAGCTACTCTTATAGCCGACTCTGCTGCGGCTGCATTGATGA
AGATGGTCGTGTGAGTGCTGTCATTGTCGGAGCAATCGAGTGGCTGCAAA
TGTGACCTGCTAACAGATGGAA
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