FC930762

Overview
NameFC930762
Unique NameFC930762
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length772
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_ENTS8 (Methylthioribose-1-phosphate isomerase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=mtnA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.209e-16
Identity = 71/211 (33.65%), Postives = 99/211 (46.92%), Query Frame = 1
Query:   37 LQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISK---AAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            L +LDQ+ LP +  +L   ++      I  + VRG               +  L A  G   DA   LG  LE L ++RPTAVNL +   ++K+ +++    AA  +EA  + Q   E  E + +                  ++L      +LTHCNTG LATAG GTALGVI   H  G +   +  ETRP  QG RLTA+EL    +P
Sbjct:   16 LWILDQQALPQQKNWLPADNTEALVGHIHALRVRGAPLIGLSASL-----LLALLAEHGMTRDA---LGQALEVLRAARPTAVNLMNNLDRMKQALTQPDFVAALGAEALRLVQEDRELCERIARAG----------------SELVKPGSRLLTHCNTGGLATAGVGTALGVIARAHEAGKVANVWVDETRPLLQGGRLTAWELGELGVP 202          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_CLOBH (Methylthioribose-1-phosphate isomerase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=mtnA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.209e-16
Identity = 74/212 (34.91%), Postives = 105/212 (49.53%), Query Frame = 1
Query:   28 RGSLQLLDQRKLPLETIYLEIRDSADG-WSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAA-----SFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATA-SEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFEL 642
            R  L LLDQ  LP +  Y+E  D+A+G + +I++M+VRG                + L   +  A +        +L +K  YL SSRPTAVNLS A   LK + SKA      +   +     E A+ + ++D+   K IG    + L++ +      +LTHCN G LAT+ YGTA   +     +G   + Y  ETRP  QGS LTA EL
Sbjct:   13 RDKLILLDQTILPNKIEYIEY-DTAEGVYDSIKDMIVRG-------APAIGVTAAYGLYFAAKVAPEDKFENFFKYLKEKSSYLDSSRPTAVNLSWA---LKVMESKALENKDKDVKEIKSILREEAKRIHEEDIEICKTIGENLITLLKDGV-----GILTHCNAGQLATSKYGTATSPMYLAKEKGWNFKVYSDETRPRLQGSTLTALEL 208          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_CLOB1 (Methylthioribose-1-phosphate isomerase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=mtnA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.209e-16
Identity = 74/212 (34.91%), Postives = 105/212 (49.53%), Query Frame = 1
Query:   28 RGSLQLLDQRKLPLETIYLEIRDSADG-WSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAA-----SFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATA-SEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFEL 642
            R  L LLDQ  LP +  Y+E  D+A+G + +I++M+VRG                + L   +  A +        +L +K  YL SSRPTAVNLS A   LK + SKA      +   +     E A+ + ++D+   K IG    + L++ +      +LTHCN G LAT+ YGTA   +     +G   + Y  ETRP  QGS LTA EL
Sbjct:   13 RDKLILLDQTILPNKIEYIEY-DTAEGVYDSIKDMIVRG-------APAIGVTAAYGLYFAAKVAPEDKFENFFKYLKEKSSYLDSSRPTAVNLSWA---LKVMESKALENKDKDVKEIKSILREEAKRIHEEDIEICKTIGENLITLLKDGV-----GILTHCNAGQLATSKYGTATSPMYLAKEKGWNFKVYSDETRPRLQGSTLTALEL 208          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_KLEP7 (Methylthioribose-1-phosphate isomerase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=mtnA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.579e-16
Identity = 72/216 (33.33%), Postives = 103/216 (47.69%), Query Frame = 1
Query:   13 SICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            S+      L +LDQ+ LP ET +L   + A     I  + VRG               +  L A  G   DA   L   LE L ++RPTAVNL +   ++K+ +++            QA    A  ++++D      I   G++ ++   +     +LTHCNTG LATAG GTALGVI   H +G +   +  ETRP  QG RLTA+EL    +P
Sbjct:    8 SLRVSENQLFILDQQALPQETRWLAADNVALLVDHIHTLRVRGAPLIGLSASL-----LLALLAQRGLNRDA---LQQALETLRAARPTAVNLMNNLDRMKQALAR--------EDYPQALEAEALRLVEEDKQLCARIAEAGSALVKPGSR-----LLTHCNTGGLATAGVGTALGVIALAHRQGKVTNVWVDETRPLLQGGRLTAWELGELGVP 202          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_ECOLU (Methylthioribose-1-phosphate isomerase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=mtnA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.579e-16
Identity = 71/214 (33.18%), Postives = 105/214 (49.07%), Query Frame = 1
Query:   34 SLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASF-LGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFL----QNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            +++++DQ KLP +   + +  +    +AI++M VRG             +         G   DA+   L    + L+ +RPTA+NL  A  ++ + +       SE   V  A+  AAEI  ++DVA  + IG +GA  +    Q +   S  ++LTHCN G LAT  +GTAL  I   H  G+    +  ETRP NQG  LTAFEL    IP
Sbjct:   19 AVEIIDQTKLPFKFEVVALTSAEMAATAIQDMWVRGAPLIGVVAAYGIAL---------GMNHDASDMGLQRYYDLLIKTRPTAINLKWALDRMIDTLKDLCV--SERKDV--AWALAAEIA-EEDVALCEQIGLHGAEVIREIAQKKPAGSVVNILTHCNAGWLATVDWGTALSPIYKAHENGIPVHVWVDETRPRNQGG-LTAFELGSHGIP 217          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_ECO45 (Methylthioribose-1-phosphate isomerase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=mtnA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.579e-16
Identity = 71/214 (33.18%), Postives = 105/214 (49.07%), Query Frame = 1
Query:   34 SLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASF-LGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFL----QNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            +++++DQ KLP +   + +  +    +AI++M VRG             +         G   DA+   L    + L+ +RPTA+NL  A  ++ + +       SE   V  A+  AAEI  ++DVA  + IG +GA  +    Q +   S  ++LTHCN G LAT  +GTAL  I   H  G+    +  ETRP NQG  LTAFEL    IP
Sbjct:   19 AVEIIDQTKLPFKFEVVALTSAEMAATAIQDMWVRGAPLIGVVAAYGIAL---------GMNHDASDMGLQRYYDLLIKTRPTAINLKWALDRMIDTLKDLCV--SERKDV--AWALAAEIA-EEDVALCEQIGLHGAEVIREIAQKKPAGSVVNILTHCNAGWLATVDWGTALSPIYKAHENGIPVHVWVDETRPRNQGG-LTAFELGSHGIP 217          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_GEOTN (Methylthioribose-1-phosphate isomerase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=mtnA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.693e-16
Identity = 71/223 (31.84%), Postives = 106/223 (47.53%), Query Frame = 1
Query:   10 QSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASF-----------LGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELV 645
            +S+ +    + +L+Q+KLP  T YL++    D   AI  + VRG                  + A  G A  A+ +           L    +YL S+RPTAVNL  A  +L    +K+AA+ +EA +      EA  I ++D+    + IG +  S      +     ++T CN GS+ATA YGTAL        +G+    Y  ETRP  QG+RLTA+EL+
Sbjct:    8 RSVEWHETHVTILNQQKLPSVTEYLDLHTLEDVHDAIVTLKVRG-------------APAIGITAAYGLALAASRYETESVDEFQRRLKQDRDYLASARPTAVNLFWALDRLVAA-AKSAASVNEAKTTLVH--EAIRIQIEDEDVCRR-IGEHALSLFHRGDR-----IMTICNAGSIATARYGTALAPFYLAKEKGIELSVYALETRPVLQGARLTAWELM 208          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_BACP2 (Methylthioribose-1-phosphate isomerase OS=Bacillus pumilus (strain SAFR-032) GN=mtnA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.693e-16
Identity = 68/223 (30.49%), Postives = 104/223 (46.64%), Query Frame = 1
Query:   10 QSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKL-----------EYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELV 645
            +S+ +    + +L+Q+KLP ET++  +    D + AI  + VRG                  + A  G A  A     + +           EYL S+RPTAVNL+ A  +L   I +AA+  +    +     EA +I ++D+  T + IG         QL  S   ++T CN GS+AT+ YGTAL        + +    Y  ETRP  QG+RLT +EL+
Sbjct:    9 RSVEWEENHINILNQQKLPAETVFEHLYTKEDVYDAIVTLKVRG-------------APAIGITAAFGLALSAQDIETEDIDVFKQEVIQIKEYLNSARPTAVNLAWALERLLRRIERAASVNAAKTDLVH---EAIQIQIEDE-ETCRQIGQNAL-----QLFKSGDRIMTICNAGSIATSRYGTALAPFYLAKKKNLDLHIYACETRPVLQGARLTTWELM 209          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA1_BACCR (Methylthioribose-1-phosphate isomerase 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=mtnA1 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.593e-16
Identity = 67/212 (31.60%), Postives = 98/212 (46.23%), Query Frame = 1
Query:   16 ICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQA---YIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFEL 642
            I ++  +L LLDQ  LP E +Y   + +   W AI+ M VRG             + +        T       +     YL +SRPTAVNL  A  +++ +     AT +   S+ Q     +E A+ + ++D   N+ IG +  +   + +      VLTHCN G+LAT  YGTA   +     +G   + Y  ETRP  QGS LTA EL
Sbjct:    8 IQWKDDALVLLDQTLLPNEIVYESFKTAESVWDAIQVMKVRGAPAIGVSAAYGVYLGIKEFA--ESTEEGFMDEVRKVCTYLATSRPTAVNLFWALERMESV-----ATDNIHLSISQLKNRLLEEAKEIHREDEEINRQIGEHALTLFHDGM-----GVLTHCNAGALATTKYGTATAPMYLAKEKGWDLKIYSDETRPRLQGSTLTALEL 207          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_BACLD (Methylthioribose-1-phosphate isomerase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=mtnA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.999e-16
Identity = 71/219 (32.42%), Postives = 108/219 (49.32%), Query Frame = 1
Query:   10 QSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEY---LVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            +S+ +   S+++L+Q+KLP +T YL +    D + AI+ + VRG                  L A S   +D ++FL +  +    L  +RPTAVNLS A   L  ++  A    S   +      EA +I ++D+  T + IG          L  S  S++T CN GS+AT+ YGTAL       ++ +    Y  ETRP  QG+RLTA+EL+   I
Sbjct:    9 RSVEWEETSVKILNQQKLPEKTEYLHLTTKEDIYDAIQTLKVRGAPAIGITAAFGLA-----LCAQSIDTSDVSAFLRELRKIKDELNQARPTAVNLSWA---LNRLLKSAEGAKSVNEAKTNLVHEAIQIQVEDE-ETCRQIGQNAL-----HLFKSGDSIMTICNAGSIATSRYGTALSPFYLAKTKDLDLHIYACETRPVLQGARLTAWELMQGGI 213          
The following BLAST results are available for this feature:
BLAST of FC930762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
MTNA_ENTS81.209e-1633.65Methylthioribose-1-phosphate isomerase OS=Enteroba... [more]
MTNA_CLOBH1.209e-1634.91Methylthioribose-1-phosphate isomerase OS=Clostrid... [more]
MTNA_CLOB11.209e-1634.91Methylthioribose-1-phosphate isomerase OS=Clostrid... [more]
MTNA_KLEP71.579e-1633.33Methylthioribose-1-phosphate isomerase OS=Klebsiel... [more]
MTNA_ECOLU1.579e-1633.18Methylthioribose-1-phosphate isomerase OS=Escheric... [more]
MTNA_ECO451.579e-1633.18Methylthioribose-1-phosphate isomerase OS=Escheric... [more]
MTNA_GEOTN2.693e-1631.84Methylthioribose-1-phosphate isomerase OS=Geobacil... [more]
MTNA_BACP22.693e-1630.49Methylthioribose-1-phosphate isomerase OS=Bacillus... [more]
MTNA1_BACCR4.593e-1631.60Methylthioribose-1-phosphate isomerase 1 OS=Bacill... [more]
MTNA_BACLD5.999e-1632.42Methylthioribose-1-phosphate isomerase OS=Bacillus... [more]

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Properties
Property NameValue
Genbank descriptionC34108G06EF PostHarvP1 Citrus clementina cDNA clone C34108G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930762 ID=FC930762; Name=FC930762; organism=Citrus clementina; type=EST; length=772bp
AACTCTCTTCAGTCCATTTGCTACAGGCGTGGCTCCCTTCAGCTTCTCGA
CCAGAGAAAGCTTCCTCTGGAAACTATTTATTTGGAAATTCGCGATTCTG
CCGATGGATGGTCTGCAATACGGGAAATGGTGGTGCGGGGGGCGCCTGCC
ATTGCTATAGCAGCGGCACTTTCCCTGGCAGTGGAGGTGTTTAATTTGAA
TGCATTTAGTGGGACTGCTGCCGATGCAGCTTCATTTCTTGGCGATAAGT
TGGAATATCTTGTCTCTAGTCGACCGACTGCAGTGAATCTTTCAGATGCT
GCCGCAAAACTCAAAGAAATCATATCAAAGGCTGCCGCTACTGCTTCAGA
AGCCAATAGTGTATTTCAGGCCTACATAGAAGCTGCTGAAATTATGCTCA
AAGATGATGTTGCTACAAACAAAGCTATTGGTTCTTATGGGGCAAGTTTT
CTTCAGAACCAGCTCAAAAATTCTAAATTCTCTGTTCTTACTCATTGCAA
CACTGGCAGTCTTGCAACAGCTGGATATGGTACCGCCCTTGGTGTGATCC
GTGCACTTCATTCTGAGGGAGTGTTAGAAAGAGCTTATTGCTCTGAAACA
CGTCCATTCAACCAAGGATCTAGACTCACTGCTTTTGAGTTGGTACATGA
TCGCATACCAGCTACTCTTATAGCCGACTCTGCTGCGGCTGCATTGATGA
AGATGGTCGTGTGAGTGCTGTCATTGTCGGAGCAATCGAGTGGCTGCAAA
TGTGACCTGCTAACAGATGGAA
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