FC930762

Overview
NameFC930762
Unique NameFC930762
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length772
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13859 contig Ccv1_Contig13859:385..1157. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_ANASP (Methylthioribose-1-phosphate isomerase OS=Anabaena sp. (strain PCC 7120) GN=mtnA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.091e-25
Identity = 74/215 (34.42%), Postives = 118/215 (54.88%), Query Frame = 1
Query:   16 ICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            + ++   + L+DQ +LP E   +EI  S D   AI+ M+VRG             +    +   +G   +    L    + L ++RPTAVNL  A +++++   K   T ++   + +  ++ A+ +  +D+ T +AIG  G + L    +  K ++LTHCN G+LATAGYGTALGV+R+   EG LER +  ETRP  QG++LT +E V + IP
Sbjct:    5 VIWQNNCVLLIDQTRLPNEYAVVEIHRSEDMARAIQTMIVRGAPAIGVAAAYGMYLGAREIE--TGERQEFLQELEKVAQLLRATRPTAVNLFWAISRMQKTAYKTLGTVAQ---IKENLLQTAQAINAEDLQTCQAIGDNGLAILPKTPE--KLTLLTHCNAGALATAGYGTALGVVRSAWREGRLERLFADETRPRLQGAKLTTWECVQEGIP 212          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_THENN (Methylthioribose-1-phosphate isomerase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=mtnA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.425e-25
Identity = 77/208 (37.02%), Postives = 112/208 (53.85%), Query Frame = 1
Query:   34 SLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            SL+LLDQRKLP    Y+E +   +   AI+EM+VRG                + L      + D   ++    E L  +RPTAVNL  A  +++++  +         ++ +   E A  M ++D+ TN+AIG  GA  +++       ++LTHCN G+LAT  YGTALGVIRA    G   R +  ETRP+ QG+RLTA+EL+ D I
Sbjct:   14 SLRLLDQRKLPFIEEYVECKTHEEVAHAIKEMIVRGAPAIGVTAAFG-----YVLGFREYRSGDLKEWMKQVKEVLSRTRPTAVNLFWALNRMEKVFLENLKN----ENLGEILEEEAMKMAQEDIETNRAIGRNGAELIEDGS-----TILTHCNAGALATVDYGTALGVIRAAVEAGKRVRVFADETRPYLQGARLTAWELMKDGI 207          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_CYAA5 (Methylthioribose-1-phosphate isomerase OS=Cyanothece sp. (strain ATCC 51142) GN=mtnA PE=3 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.425e-25
Identity = 79/223 (35.43%), Postives = 118/223 (52.91%), Query Frame = 1
Query:    1 NSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLG--DKL-EYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            N++  + +    + L+DQ  LP     +EI    D   AI+ M+VRG                  L A      D  +FL   DK+ + L  +RPTAVNL  A +++ +   +   T  E   +    +E A+ + ++D+ T +AIG    S L    +  K ++LTHCN G+LATAGYGTALGVIR++ + G L R +  ETRP  QG++LTA+E V ++IP
Sbjct:    2 NTIYPVIWSNNKVLLIDQTSLPSRYTLVEISRYEDMAKAIKTMIVRGAPAIGVAAAYGMY-----LGARDIQTQDRETFLKHLDKIAQILRQTRPTAVNLFWAISRMLKTAYETLGTVEEIKKIL---LETAQKIQEEDLQTCQAIGHNSLSILPTNPE--KLTILTHCNAGALATAGYGTALGVIRSVWTAGRLNRVFADETRPRLQGAKLTAWECVQEKIP 214          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_MICAE (Methylthioribose-1-phosphate isomerase OS=Microcystis aeruginosa GN=mtnA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.861e-25
Identity = 82/223 (36.77%), Postives = 116/223 (52.02%), Query Frame = 1
Query:    1 NSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKL---EYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            NS+  + ++   + L+DQ +LP+E   +EI  S     AI  M+VRG                  L A          FL D     + L  +RPTAVNL  A  ++ ++   A  +  E   + +  +E A  + K+DV T +AIG +G   L  Q +  K ++LTHCNTGSLATA YGTALGVIR+  + G L + Y  ETRP  QG++LTA+E   + IP
Sbjct:    9 NSIYPVRWQDNKVWLIDQTRLPMEYGEVEITSSEAMARAIETMIVRGAPAIGVAAAYGMV-----LGAQEIKTNQKEEFLADLTRIADRLAQTRPTAVNLFWAIERMLKV---ARESGPEVAIISKNLLETAHNIQKEDVETCRAIGHHGLLALPEQPE--KLTILTHCNTGSLATASYGTALGVIRSAWTAGRLIQVYADETRPRLQGAKLTAWECAREGIP 221          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_XANC5 (Methylthioribose-1-phosphate isomerase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=mtnA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.430e-25
Identity = 77/217 (35.48%), Postives = 117/217 (53.92%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            ++ + +   +L+LLDQRKLP E  ++    S     AI  + VRG             +   ++ A  G+AA     L   L  L ++RPTAVNL+ A  +++ ++  A A   E  +        A+ +  +D+A N+ +G+ GA+ +          VLTHCNTGSLATAG+GTALGVIRA  ++  + + +  ETRP+ QG+RLT +EL  D I
Sbjct:   15 IRPLLWTGDALELLDQRKLPFEVAHVRCDSSDAVAEAIHSLAVRGAPAIGIAAGWGVVLAARDIAADDGSAA--LQKLEPALLRLNAARPTAVNLAWALMRMRRVLGAAGADWREVIA------REAQAIADEDLAANRHMGALGAALIA-----PGSGVLTHCNTGSLATAGFGTALGVIRAGMAQQRIAKVFAGETRPWLQGARLTVWELQQDGI 218          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_SYNP6 (Methylthioribose-1-phosphate isomerase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.430e-25
Identity = 79/217 (36.41%), Postives = 114/217 (52.53%), Query Frame = 1
Query:   10 QSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            QS+ +    L+LLDQR LP ET Y     +A    AI++MVVRG             +   +  +    +AD  + L    E L ++RPTAVNL+ A  ++   ++  A    EA ++    + AA+ +  +DVA N+ IG    + +  Q      +V+ HCNTG+LAT  YGTALG+IR  H +G    AY  ETRP  QG+ L+AFEL    +P
Sbjct:    5 QSLLWTGSQLRLLDQRSLPQETQYRYYDTAAGVAQAIQDMVVRGAPAIGVAAAFGLVLT--SQQSAMTDSADLRAQLAIAAETLKAARPTAVNLAWAVDRM---LAAIANPDLEAAAIHATLLAAAQQLYDEDVAVNRQIGLNAQALIPQQA-----NVIHHCNTGALATVDYGTALGIIRIAHEQGKQIHAYLDETRPRLQGANLSAFELQAYGVP 211          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_SYNE7 (Methylthioribose-1-phosphate isomerase OS=Synechococcus elongatus (strain PCC 7942) GN=mtnA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.430e-25
Identity = 79/217 (36.41%), Postives = 114/217 (52.53%), Query Frame = 1
Query:   10 QSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            QS+ +    L+LLDQR LP ET Y     +A    AI++MVVRG             +   +  +    +AD  + L    E L ++RPTAVNL+ A  ++   ++  A    EA ++    + AA+ +  +DVA N+ IG    + +  Q      +V+ HCNTG+LAT  YGTALG+IR  H +G    AY  ETRP  QG+ L+AFEL    +P
Sbjct:    5 QSLLWTGSQLRLLDQRSLPQETQYRYYDTAAGVAQAIQDMVVRGAPAIGVAAAFGLVLT--SQQSAMTDSADLRAQLAIAAETLKAARPTAVNLAWAVDRM---LAAIANPDLEAAAIHATLLAAAQQLYDEDVAVNRQIGLNAQALIPQQA-----NVIHHCNTGALATVDYGTALGIIRIAHEQGKQIHAYLDETRPRLQGANLSAFELQAYGVP 211          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_GEOSL (Methylthioribose-1-phosphate isomerase OS=Geobacter sulfurreducens GN=mtnA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.430e-25
Identity = 81/231 (35.06%), Postives = 115/231 (49.78%), Query Frame = 1
Query:    4 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLE-----------YLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLK-DDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIP 660
            S ++I +R   + ++DQ +LP E +Y E  D      AIR MV+RG                  + A  G A  A   + D  E            +  +RPTAVNL  A  ++K +   A     +     +  ++   I ++ +D+   KAIG +GA+ +         +VLTHCN G LATAGYGTALGVIRA H  G   + +  ETRP+ QG+RLTA+EL+ D IP
Sbjct:    2 SFRTIEWRDDKVVMIDQTRLPGEEVYCEYADYKSVAEAIRGMVIRG-------------APAIGVAAAMGVALGAREIIADTYESFFRQMENVCDVMARTRPTAVNLFWAIERMKRV---ADENRDKPLDQLREILKTEAIRIEQEDLELCKAIGRHGAALIPEGA-----TVLTHCNAGGLATAGYGTALGVIRAAHDAGKKIQVFADETRPWLQGARLTAWELMKDGIP 211          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_XANAC (Methylthioribose-1-phosphate isomerase OS=Xanthomonas axonopodis pv. citri GN=mtnA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.174e-25
Identity = 77/217 (35.48%), Postives = 117/217 (53.92%), Query Frame = 1
Query:    7 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            ++ + +   +L+LLDQRKLP E  ++    S     AI  + VRG             +   ++ A  G+AA     L   L  L ++RPTAVNL+ A  +++ ++  A A   E  +        A+ +  +D+A N+ +G+ GA+ +          VLTHCNTGSLATAG+GTALGVIRA  ++  + + +  ETRP+ QG+RLT +EL  D I
Sbjct:   15 IRPLLWTGDALELLDQRKLPFEVAHVRCDSSDAVAEAIHSLAVRGAPAIGIAAGWGVVLAARDIAADDGSAA--LQKLEPALLRLNAARPTAVNLAWALMRMRRVLGAAGADWREVIA------REAQAIADEDLAANRHMGALGAALIA-----PGSGVLTHCNTGSLATAGFGTALGVIRAGMAQQRIAKVFAGETRPWLQGARLTVWELHQDGI 218          
BLAST of FC930762 vs. ExPASy Swiss-Prot
Match: MTNA_THEM4 (Methylthioribose-1-phosphate isomerase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=mtnA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.174e-25
Identity = 80/210 (38.10%), Postives = 111/210 (52.86%), Query Frame = 1
Query:   37 LQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVFNLNAFSGTAADAASF---LGDKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRI 657
            L L+DQRK+PL+  Y+  +   +   AI+EMVVRG                + L A      D  +F   + +  E L ++RPTAVNL  A  +++  + K      +   V +     A  + K+D+  N AIG YGA     QL     +VLTHCN G+LAT  YGTALGVIRA   +G   + +  ETRP+ QG+RLTA+EL+ D I
Sbjct:   15 LILIDQRKIPLKEEYMSCKTYKEVALAIKEMVVRGAPAIGASAAFG-----YVLGAREKFVEDFEAFVEKMREVKEVLANTRPTAVNLFWALNRMENALRKYG----KVEGVLEFLENEALNIAKEDIEVNMAIGRYGA-----QLLKDGDTVLTHCNAGALATVDYGTALGVIRAAVEQGKRIKVFADETRPYLQGARLTAWELMKDGI 210          
The following BLAST results are available for this feature:
BLAST of FC930762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
MTNA_ANASP1.091e-2534.42Methylthioribose-1-phosphate isomerase OS=Anabaena... [more]
MTNA_THENN1.425e-2537.02Methylthioribose-1-phosphate isomerase OS=Thermoto... [more]
MTNA_CYAA51.425e-2535.43Methylthioribose-1-phosphate isomerase OS=Cyanothe... [more]
MTNA_MICAE1.861e-2536.77Methylthioribose-1-phosphate isomerase OS=Microcys... [more]
MTNA_XANC52.430e-2535.48Methylthioribose-1-phosphate isomerase OS=Xanthomo... [more]
MTNA_SYNP62.430e-2536.41Methylthioribose-1-phosphate isomerase OS=Synechoc... [more]
MTNA_SYNE72.430e-2536.41Methylthioribose-1-phosphate isomerase OS=Synechoc... [more]
MTNA_GEOSL2.430e-2535.06Methylthioribose-1-phosphate isomerase OS=Geobacte... [more]
MTNA_XANAC3.174e-2535.48Methylthioribose-1-phosphate isomerase OS=Xanthomo... [more]
MTNA_THEM43.174e-2538.10Methylthioribose-1-phosphate isomerase OS=Thermosi... [more]

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Properties
Property NameValue
Genbank descriptionC34108G06EF PostHarvP1 Citrus clementina cDNA clone C34108G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930762 ID=FC930762; Name=FC930762; organism=Citrus clementina; type=EST; length=772bp
AACTCTCTTCAGTCCATTTGCTACAGGCGTGGCTCCCTTCAGCTTCTCGA
CCAGAGAAAGCTTCCTCTGGAAACTATTTATTTGGAAATTCGCGATTCTG
CCGATGGATGGTCTGCAATACGGGAAATGGTGGTGCGGGGGGCGCCTGCC
ATTGCTATAGCAGCGGCACTTTCCCTGGCAGTGGAGGTGTTTAATTTGAA
TGCATTTAGTGGGACTGCTGCCGATGCAGCTTCATTTCTTGGCGATAAGT
TGGAATATCTTGTCTCTAGTCGACCGACTGCAGTGAATCTTTCAGATGCT
GCCGCAAAACTCAAAGAAATCATATCAAAGGCTGCCGCTACTGCTTCAGA
AGCCAATAGTGTATTTCAGGCCTACATAGAAGCTGCTGAAATTATGCTCA
AAGATGATGTTGCTACAAACAAAGCTATTGGTTCTTATGGGGCAAGTTTT
CTTCAGAACCAGCTCAAAAATTCTAAATTCTCTGTTCTTACTCATTGCAA
CACTGGCAGTCTTGCAACAGCTGGATATGGTACCGCCCTTGGTGTGATCC
GTGCACTTCATTCTGAGGGAGTGTTAGAAAGAGCTTATTGCTCTGAAACA
CGTCCATTCAACCAAGGATCTAGACTCACTGCTTTTGAGTTGGTACATGA
TCGCATACCAGCTACTCTTATAGCCGACTCTGCTGCGGCTGCATTGATGA
AGATGGTCGTGTGAGTGCTGTCATTGTCGGAGCAATCGAGTGGCTGCAAA
TGTGACCTGCTAACAGATGGAA
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