FC930764

Overview
NameFC930764
Unique NameFC930764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: RBM7_BOVIN (RNA-binding protein 7 OS=Bos taurus GN=RBM7 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.364e-15
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = 2
Query:   89 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN-KASQDKKSLDVGANL---FIGNLDP 400
            +A    D T +VGNL+ +VTEELL+ELF QAGPV+ V +PKD+     Q + FV F+ E    YA+ +LN IKL+G+PI++  +A     S +V  +     +GN  P
Sbjct:    3 AAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQ-FAFVNFKHEVSVPYAMNLLNGIKLFGRPIKIQFRAGSSHASQEVSLSYPQHHVGNSSP 109          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: NUCL_PONAB (Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 5.699e-15
Identity = 57/186 (30.65%), Postives = 95/186 (51.08%), Query Frame = 2
Query:   80 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKG 625
            G++S    +  T  + NL    TEE L E+F +A     + VP+++     +GY F+EF S EDA  A+   N  ++ G+ IR+     + S + +S      LF+  L  D  E+ L ++F          +I+ D +TG+S+GFGF+ ++S E + AA EAM    +   ++T+ +A  K   G
Sbjct:  478 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA---TFIKVPQNQ-NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKESFDGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 654          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: NUCL_MACFA (Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 5.699e-15
Identity = 57/186 (30.65%), Postives = 95/186 (51.08%), Query Frame = 2
Query:   80 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKG 625
            G++S    +  T  + NL    TEE L E+F +A     + VP+++     +GY F+EF S EDA  A+   N  ++ G+ IR+     + S + +S      LF+  L  D  E+ L ++F          +I+ D +TG+S+GFGF+ ++S E + AA EAM    +   ++T+ +A  K   G
Sbjct:  477 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA---TFIKVPQNQ-NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKESFDGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 653          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: NUCL_HUMAN (Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 5.699e-15
Identity = 57/186 (30.65%), Postives = 95/186 (51.08%), Query Frame = 2
Query:   80 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKG 625
            G++S    +  T  + NL    TEE L E+F +A     + VP+++     +GY F+EF S EDA  A+   N  ++ G+ IR+     + S + +S      LF+  L  D  E+ L ++F          +I+ D +TG+S+GFGF+ ++S E + AA EAM    +   ++T+ +A  K   G
Sbjct:  476 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA---TFIKVPQNQ-NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKESFDGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 652          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: NUCL_RAT (Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 7.444e-15
Identity = 57/186 (30.65%), Postives = 95/186 (51.08%), Query Frame = 2
Query:   80 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKG 625
            G++S    +  T  + NL    TEE L E+F +A     + VP++      +GY F+EF S EDA  A+   N +++ G+ IR+     + S + +S      LF+  L  D  E+ L ++F          +I+ D +TG+S+GFGF+ ++S E + AA EAM    +   ++T+ +A  K   G
Sbjct:  479 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA---TFIKVPQNP-HGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKESFEGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 655          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: NUCL_MOUSE (Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.444e-15
Identity = 57/185 (30.81%), Postives = 93/185 (50.27%), Query Frame = 2
Query:   80 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLH---QGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKG 625
            G+ S    +  T  + NL    T+E L E+F +A     + VP+    N H   +GY F+EF S EDA  A+   N +++ G+ IR+     + +S      LF+  L  D  E+ L ++F          +I+ D +TG+S+GFGF+ ++S E + AA EAM    +   ++T+ +A  K   G
Sbjct:  477 GKTSTWSGESKTLVLSNLSYSATKETLEEVFEKA---TFIKVPQ----NPHGKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGSNSRS-QPSKTLFVKGLSEDTTEETLKESFEGS----VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 649          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: SXL_MUSDO (Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 58/182 (31.87%), Postives = 83/182 (45.60%), Query Frame = 2
Query:   35 GMTTRIAPGVGANLLGQHSAERNQDATAYVGN------LDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 562
            G    +AP    N L         D  A  G       L   +T+  L+ LF   GP+    + KD  T    GY FV+F SE DA  AIK +N I +  K ++V+ A    +S+    NL++ NL   + +  L   F  +G IV    I+RD  TG  RG  F+ ++  E +  AI A+N
Sbjct:   71 GSMCNMAPAQSTNSLNSGGDGGGGDTQAVNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNGITVRNKRLKVSYARPGGESIK-DTNLYVTNLPRTITDDELEKIFGKYGNIV-QKNILRDKLTGRPRGVAFVRFNKREEAQEAISALN 250          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: NUCL_CHICK (Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 56/186 (30.11%), Postives = 92/186 (49.46%), Query Frame = 2
Query:   83 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN---------LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 613
            Q      +  T  V NL    +EE L ELF +A    ++ +P++      +GY FVEF + EDA  A+   N  ++ G+ IR+  +S   +  ++ A          LF+  L  D  E+ L ++F        + +I+ D DTG+S+GFGF+ + S E + AA EAM    +   ++T+ +A  K
Sbjct:  452 QKGGGERESKTLIVNNLSYAASEETLQELFKKA---TSIKMPQNN-QGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEGS----ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPK 629          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: SXL_CERCA (Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 49/147 (33.33%), Postives = 76/147 (51.70%), Query Frame = 2
Query:  122 VGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 562
            V  L   +T+  L+ LF   GP+    + +D  T    GY FV+F +E D+  AIK LN I +  K ++V+ A    +S+    NL++ NL   + +  L   F  +G+IV    I+RD  TG  RG  F+ ++  E +  AI A+N
Sbjct:  114 VNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLKVSYARPGGESIK-DTNLYVTNLPRTITDDQLDTIFGKYGMIV-QKNILRDKLTGKPRGVAFVRFNKREEAQEAISALN 258          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ELV1A_XENLA (ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-A PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 56/174 (32.18%), Postives = 87/174 (50.00%), Query Frame = 2
Query:  122 VGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQ-----------GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 604
            V  L   +T++ L  LF   G V +  + +D+V                GYGFV + + +DA+ AI  LN ++L  K I+V+ A    +S+   ANL+I  L   + +K + D F  FG I+ N +++ D  TG SRG  FI +D    ++ AI + NG      +  ITV +A
Sbjct:   24 VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSESIK-DANLYISGLPRTMTQKDVEDMFLPFGHII-NSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA 195          
The following BLAST results are available for this feature:
BLAST of FC930764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
RBM7_BOVIN4.364e-1542.59RNA-binding protein 7 OS=Bos taurus GN=RBM7 PE=2 S... [more]
NUCL_PONAB5.699e-1530.65Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3[more]
NUCL_MACFA5.699e-1530.65Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3[more]
NUCL_HUMAN5.699e-1530.65Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3[more]
NUCL_RAT7.444e-1530.65Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3[more]
NUCL_MOUSE7.444e-1530.81Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2[more]
SXL_MUSDO9.722e-1531.87Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 ... [more]
NUCL_CHICK2.829e-1430.11Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1[more]
SXL_CERCA4.825e-1433.33Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE... [more]
ELV1A_XENLA4.825e-1432.18ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-... [more]

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Properties
Property NameValue
Genbank descriptionC34108G08EF PostHarvP1 Citrus clementina cDNA clone C34108G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930764 ID=FC930764; Name=FC930764; organism=Citrus clementina; type=EST; length=704bp
GAAGTAGAAGAAGAAGAAGTAATAACGAGTAAAAGGCATGACCACTCGAA
TCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGAGA
AATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACTGA
GGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAATGTGT
ATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTGTA
GAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAATAT
GATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGACA
AAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACCCA
GATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTCAT
TGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCGTG
GTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTATT
GAGGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTACTGTCTCATA
TGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGGCAGAGA
GAATTTTGGCGGCAAACATCCGAGTTCCCAGAAGAGTAGCCCACACTTTA
TTTG
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