FC930764

Overview
NameFC930764
Unique NameFC930764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: RBMS1_MOUSE (RNA-binding motif, single-stranded-interacting protein 1 OS=Mus musculus GN=Rbms1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.458e-12
Identity = 47/152 (30.92%), Postives = 77/152 (50.66%), Query Frame = 2
Query:  119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL 574
            Y+  L P  T++ L +L    G +V+     D+ TN  +GYGFV+F S   A  A+  L         ++   A Q ++      NL+I NL   +DE+ L +    FG +++  +++RD  +G SRG GF   +S E  +A I   NG+++
Sbjct:   65 YIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALK-----ANGVQAQMAKQQEQD---PTNLYISNLPLSMDEQELENMLKPFGQVIST-RVLRD-SSGASRGVGFARMESTEKCEAVIGHFNGKFI 206          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 52/178 (29.21%), Postives = 92/178 (51.69%), Query Frame = 2
Query:  110 ATAYVGNLDPQVTEELLWELFVQAGP-VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG----KPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISY-DSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 622
            A+ ++G+L+P + E  +   F   G  V++V + ++R+T +  GY FVEF     A+  +  +N   L G    K  ++N A+  K+  +    +LF+G+L PDVD+ +LY+ F          K++ D  TG S+G+GF+ + D  E   A  E      L ++ + +S A  K ++
Sbjct:    3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: RO32_XENLA (Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 46/162 (28.40%), Postives = 78/162 (48.15%), Query Frame = 2
Query:   80 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 550
            G    E  Q    ++G L  + T++ L E F Q G + +  V +D  T   +G+GFV +   E+ D ++      K+ G+ +   +A   + S   GA+L     F+G +  D +E  L D F  +G I T  ++M D  +G  RGF F+++D  +  D  +
Sbjct:   17 GHEPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA-RPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIET-IEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 52/178 (29.21%), Postives = 92/178 (51.69%), Query Frame = 2
Query:  110 ATAYVGNLDPQVTEELLWELFVQAGP-VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG----KPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISY-DSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 622
            A+ ++G+L+P + E  +   F   G  V++V + ++R+T +  GY FVEF     A+  +  +N   L G    K  ++N A+  K+  +    +LF+G+L PDVD+ +LY+ F          K++ D  TG S+G+GF+ + D  E   A  E      L ++ + +S A  K ++
Sbjct:    3 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPKASR 179          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ROA2_PONAB (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii GN=HNRNPA2B1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 47/163 (28.83%), Postives = 80/163 (49.08%), Query Frame = 2
Query:   77 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 550
            L +   E+ Q    ++G L  + TEE L   + Q G + +  V +D  +   +G+GFV F S  + D A+       + G+ +   +A   ++S   GA+     LF+G +  D +E  L D F  +G I T  +I+ D  +G  RGFGF+++D  +  D  +
Sbjct:   10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT-IEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ROA2_MOUSE (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus GN=Hnrnpa2b1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 47/163 (28.83%), Postives = 80/163 (49.08%), Query Frame = 2
Query:   77 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 550
            L +   E+ Q    ++G L  + TEE L   + Q G + +  V +D  +   +G+GFV F S  + D A+       + G+ +   +A   ++S   GA+     LF+G +  D +E  L D F  +G I T  +I+ D  +G  RGFGF+++D  +  D  +
Sbjct:   10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT-IEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ROA2_HUMAN (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 47/163 (28.83%), Postives = 80/163 (49.08%), Query Frame = 2
Query:   77 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 550
            L +   E+ Q    ++G L  + TEE L   + Q G + +  V +D  +   +G+GFV F S  + D A+       + G+ +   +A   ++S   GA+     LF+G +  D +E  L D F  +G I T  +I+ D  +G  RGFGF+++D  +  D  +
Sbjct:   10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDT-IEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ROA1_CAEEL (Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis elegans GN=hrp-1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 46/162 (28.40%), Postives = 80/162 (49.38%), Query Frame = 2
Query:   80 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA--SQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 550
            G  S E       +VG L    T++L+ E + Q G + ++ V +D  T   +G+GFV F  + + D A+K    I + GK +   +A    DK   +   +   L++  +  D  E +L + F+ +G  VT  +I+ D  T   RGFGF+++D  ++ D  +
Sbjct:   13 GDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHI-IDGKTVDPKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGT-VTKSEIILDKATQKPRGFGFVTFDDHDSVDQCV 172          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: CELF5_XENTR (CUG-BP- and ETR-3-like factor 5 OS=Xenopus tropicalis GN=brunol5 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 54/177 (30.51%), Postives = 87/177 (49.15%), Query Frame = 2
Query:  119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKL---YGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL---CNRQITVSYAYKKDTKGER 631
            +VG +   + E+ L  LF Q G +  + V KDR T +H+G  F+ + + + A  A   L+  K      +PI+V  A  + +  D    LF+G L     E+ +   F AFG I     ++R PD G+S+G  F+ + S   + AAI+A++G       +  + V +A   DT  ER
Sbjct:   50 FVGQIPRNLEEKDLKPLFEQFGKIYELTVLKDRYTGMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGD--RKLFVGMLSKQQSEEEVTSMFQAFGSI-EECSVLRGPD-GSSKGCAFVKFSSHAEAQAAIQALHGSQTMPGASSSLVVKFA---DTDKER 219          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 47/169 (27.81%), Postives = 89/169 (52.66%), Query Frame = 2
Query:   59 GVGANLLGQHSAERN-----QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 550
            G GA    + +AE       +D   ++G L+ + T++ L + F Q G V++  V +D  T   +G+GF+ F++ +  +  +   +   L GK I   +A   ++  +  A +F+G +  D  E+   + F+ FG ++ +  +M D DTG  RGFGF++Y++  A +A +
Sbjct:  141 GSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEH--HLDGKIIDPKRAI-PREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVL-DATLMMDKDTGRPRGFGFVTYENESAVEATM 305          
The following BLAST results are available for this feature:
BLAST of FC930764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
RBMS1_MOUSE3.458e-1230.92RNA-binding motif, single-stranded-interacting pro... [more]
TSAP1_HUMAN4.516e-1229.21tRNA selenocysteine 1-associated protein 1 OS=Homo... [more]
RO32_XENLA4.516e-1228.40Heterogeneous nuclear ribonucleoprotein A3 homolog... [more]
TSAP1_BOVIN5.898e-1229.21tRNA selenocysteine 1-associated protein 1 OS=Bos ... [more]
ROA2_PONAB5.898e-1228.83Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA2_MOUSE5.898e-1228.83Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA2_HUMAN5.898e-1228.83Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
ROA1_CAEEL5.898e-1228.40Heterogeneous nuclear ribonucleoprotein A1 OS=Caen... [more]
CELF5_XENTR5.898e-1230.51CUG-BP- and ETR-3-like factor 5 OS=Xenopus tropica... [more]
YHKF_SCHPO7.703e-1227.81Uncharacterized RNA-binding protein C660.15 OS=Sch... [more]

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Properties
Property NameValue
Genbank descriptionC34108G08EF PostHarvP1 Citrus clementina cDNA clone C34108G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930764 ID=FC930764; Name=FC930764; organism=Citrus clementina; type=EST; length=704bp
GAAGTAGAAGAAGAAGAAGTAATAACGAGTAAAAGGCATGACCACTCGAA
TCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGAGA
AATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACTGA
GGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAATGTGT
ATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTGTA
GAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAATAT
GATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGACA
AAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACCCA
GATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTCAT
TGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCGTG
GTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTATT
GAGGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTACTGTCTCATA
TGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGGCAGAGA
GAATTTTGGCGGCAAACATCCGAGTTCCCAGAAGAGTAGCCCACACTTTA
TTTG
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