FC930764
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: SHEP_DROVI (Protein alan shepard OS=Drosophila virilis GN=shep PE=3 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11 Identity = 50/174 (28.74%), Postives = 79/174 (45.40%), Query Frame = 2 Query: 44 TRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 565 T + P A Q E+ Y+ L T++ L + Q G +++ D+ TN +GYGFV+F A+ A+K L K ++ A Q ++ NL+I NL P E L + +G +V+ +I+RD NS+G GF +S E + I+ NG Sbjct: 221 TTMGPNGTAQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAEGAVK-----GLQAKGVQAQMAKQQEQD---PTNLYIANLPPHFKETDLEAMLAKYGQVVST-RILRDQQM-NSKGVGFARMESREKCEQIIQMFNG 384
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: SHEP_DROGR (Protein alan shepard OS=Drosophila grimshawi GN=shep PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11 Identity = 50/174 (28.74%), Postives = 79/174 (45.40%), Query Frame = 2 Query: 44 TRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 565 T + P A Q E+ Y+ L T++ L + Q G +++ D+ TN +GYGFV+F A+ A+K L K ++ A Q ++ NL+I NL P E L + +G +V+ +I+RD NS+G GF +S E + I+ NG Sbjct: 235 TTMGPNGTAQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAEGAVK-----GLQAKGVQAQMAKQQEQD---PTNLYIANLPPHFKETDLEAMLAKYGQVVST-RILRDQQM-NSKGVGFARMESREKCEQIIQMFNG 398
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PES4_YEAST (Protein PES4 OS=Saccharomyces cerevisiae GN=PES4 PE=2 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11 Identity = 48/182 (26.37%), Postives = 89/182 (48.90%), Query Frame = 2 Query: 89 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKK-SLDVGANLFIGNL---DPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 622 S E + ++G+L VTEE L +F + V+ V D VT G+G++ F +E+A+ A++ LN K+ GK IR+ + ++ + G N+F NL +P + ++ YDTFS +G I++ R + GF+ ++ + + I+ N ++I + K+ + Sbjct: 84 SFESKKLVPLFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEELNYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCKLDSR-------KDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVR 258
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ROA1_SCHAM (Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog OS=Schistocerca americana GN=HNRNP PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11 Identity = 53/179 (29.61%), Postives = 88/179 (49.16%), Query Frame = 2 Query: 119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA--SQDKKSLDVGA---NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK-DTKGERHG 637 ++G LD + T+E L + F Q G +V+V V KD T +G+GF+ + D A + K+ G+ + +A + + GA LF+G + +++E L D F +G +V + I+ D +T RGF F+ +D ++ D + N Q + + I V A K D G R G Sbjct: 20 FIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDA-QNARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVV-SAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQ-IRGKHIDVKKALPKGDAPGGRGG 195
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11 Identity = 50/184 (27.17%), Postives = 84/184 (45.65%), Query Frame = 2 Query: 95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----------LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 613 E T + L ++ L E F G V +V + DR + +G +VEF AI + ++ G PI V + +K AN L++G+L ++ E +L F FG I + ++M D +TG S+G+GFI++ E + A+E +NG L R + V + ++ Sbjct: 148 EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQ-RVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRI-ESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11 Identity = 50/184 (27.17%), Postives = 84/184 (45.65%), Query Frame = 2 Query: 95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----------LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 613 E T + L ++ L E F G V +V + DR + +G +VEF AI + ++ G PI V + +K AN L++G+L ++ E +L F FG I + ++M D +TG S+G+GFI++ E + A+E +NG L R + V + ++ Sbjct: 148 EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQ-RVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRI-ESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: HNRDL_MOUSE (Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus GN=Hnrpdl PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11 Identity = 50/158 (31.65%), Postives = 78/158 (49.37%), Query Frame = 2 Query: 89 SAERNQ--DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 556 +A +NQ D ++G L +++ L E + G VV+ + D VT +G+GFV F+ D ++ L KL GK I +A + K + +F+G L PD E+ + + F AFG I N ++ D T RGF FI+Y E +E+ Sbjct: 20 NASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE-LKEHKLDGKLIDPKRA-KALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEI-ENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 174
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: HNRDL_HUMAN (Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens GN=HNRPDL PE=1 SV=3) HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11 Identity = 50/158 (31.65%), Postives = 78/158 (49.37%), Query Frame = 2 Query: 89 SAERNQ--DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 556 +A +NQ D ++G L +++ L E + G VV+ + D VT +G+GFV F+ D ++ L KL GK I +A + K + +F+G L PD E+ + + F AFG I N ++ D T RGF FI+Y E +E+ Sbjct: 139 NASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE-LKEHKLDGKLIDPKRA-KALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEI-ENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ROA1_RAT (Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus GN=Hnrnpa1 PE=1 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11 Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 2 Query: 95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 550 E Q ++G L + T+E L F Q G + + V +D T +G+GFV + + E+ D A+ K+ G+ + +A + S GA+L F+G + D +E L D F +G I +IM D +G RGF F+++D ++ D + Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV-IEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ROA1_PANTR (Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes GN=HNRNPA1 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11 Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 2 Query: 95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 550 E Q ++G L + T+E L F Q G + + V +D T +G+GFV + + E+ D A+ K+ G+ + +A + S GA+L F+G + D +E L D F +G I +IM D +G RGF F+++D ++ D + Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV-IEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163 The following BLAST results are available for this feature:
BLAST of FC930764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 192
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930764 ID=FC930764; Name=FC930764; organism=Citrus clementina; type=EST; length=704bpback to top |