FC930764

Overview
NameFC930764
Unique NameFC930764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: SHEP_DROVI (Protein alan shepard OS=Drosophila virilis GN=shep PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 50/174 (28.74%), Postives = 79/174 (45.40%), Query Frame = 2
Query:   44 TRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 565
            T + P   A    Q   E+      Y+  L    T++ L  +  Q G +++     D+ TN  +GYGFV+F     A+ A+K      L  K ++   A Q ++      NL+I NL P   E  L    + +G +V+  +I+RD    NS+G GF   +S E  +  I+  NG
Sbjct:  221 TTMGPNGTAQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAEGAVK-----GLQAKGVQAQMAKQQEQD---PTNLYIANLPPHFKETDLEAMLAKYGQVVST-RILRDQQM-NSKGVGFARMESREKCEQIIQMFNG 384          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: SHEP_DROGR (Protein alan shepard OS=Drosophila grimshawi GN=shep PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 50/174 (28.74%), Postives = 79/174 (45.40%), Query Frame = 2
Query:   44 TRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 565
            T + P   A    Q   E+      Y+  L    T++ L  +  Q G +++     D+ TN  +GYGFV+F     A+ A+K      L  K ++   A Q ++      NL+I NL P   E  L    + +G +V+  +I+RD    NS+G GF   +S E  +  I+  NG
Sbjct:  235 TTMGPNGTAQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAEGAVK-----GLQAKGVQAQMAKQQEQD---PTNLYIANLPPHFKETDLEAMLAKYGQVVST-RILRDQQM-NSKGVGFARMESREKCEQIIQMFNG 398          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PES4_YEAST (Protein PES4 OS=Saccharomyces cerevisiae GN=PES4 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 48/182 (26.37%), Postives = 89/182 (48.90%), Query Frame = 2
Query:   89 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKK-SLDVGANLFIGNL---DPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 622
            S E  +    ++G+L   VTEE L  +F +    V+  V  D VT    G+G++ F  +E+A+ A++ LN  K+ GK IR+  + ++     + G N+F  NL   +P +  ++ YDTFS +G I++     R       +  GF+ ++  + +   I+  N      ++I     + K+ +
Sbjct:   84 SFESKKLVPLFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEELNYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCKLDSR-------KDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVR 258          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ROA1_SCHAM (Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog OS=Schistocerca americana GN=HNRNP PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 53/179 (29.61%), Postives = 88/179 (49.16%), Query Frame = 2
Query:  119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA--SQDKKSLDVGA---NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK-DTKGERHG 637
            ++G LD + T+E L + F Q G +V+V V KD  T   +G+GF+ +      D A +     K+ G+ +   +A    +    + GA    LF+G +  +++E  L D F  +G +V +  I+ D +T   RGF F+ +D ++  D    + N Q +  + I V  A  K D  G R G
Sbjct:   20 FIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDA-QNARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVV-SAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRNHQ-IRGKHIDVKKALPKGDAPGGRGG 195          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 50/184 (27.17%), Postives = 84/184 (45.65%), Query Frame = 2
Query:   95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----------LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 613
            E     T +   L  ++    L E F   G V +V +  DR +   +G  +VEF        AI +    ++ G PI V  +  +K      AN           L++G+L  ++ E +L   F  FG I  + ++M D +TG S+G+GFI++   E +  A+E +NG  L  R + V +  ++
Sbjct:  148 EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQ-RVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRI-ESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 50/184 (27.17%), Postives = 84/184 (45.65%), Query Frame = 2
Query:   95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----------LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 613
            E     T +   L  ++    L E F   G V +V +  DR +   +G  +VEF        AI +    ++ G PI V  +  +K      AN           L++G+L  ++ E +L   F  FG I  + ++M D +TG S+G+GFI++   E +  A+E +NG  L  R + V +  ++
Sbjct:  148 EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQ-RVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRI-ESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: HNRDL_MOUSE (Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus GN=Hnrpdl PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 50/158 (31.65%), Postives = 78/158 (49.37%), Query Frame = 2
Query:   89 SAERNQ--DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 556
            +A +NQ  D   ++G L    +++ L E   + G VV+  +  D VT   +G+GFV F+     D  ++ L   KL GK I   +A +  K  +    +F+G L PD  E+ + + F AFG I  N ++  D  T   RGF FI+Y   E     +E+
Sbjct:   20 NASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE-LKEHKLDGKLIDPKRA-KALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEI-ENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 174          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: HNRDL_HUMAN (Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens GN=HNRPDL PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 50/158 (31.65%), Postives = 78/158 (49.37%), Query Frame = 2
Query:   89 SAERNQ--DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 556
            +A +NQ  D   ++G L    +++ L E   + G VV+  +  D VT   +G+GFV F+     D  ++ L   KL GK I   +A +  K  +    +F+G L PD  E+ + + F AFG I  N ++  D  T   RGF FI+Y   E     +E+
Sbjct:  139 NASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE-LKEHKLDGKLIDPKRA-KALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEI-ENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ROA1_RAT (Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus GN=Hnrnpa1 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 2
Query:   95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 550
            E  Q    ++G L  + T+E L   F Q G + +  V +D  T   +G+GFV + + E+ D A+      K+ G+ +   +A   + S   GA+L     F+G +  D +E  L D F  +G I    +IM D  +G  RGF F+++D  ++ D  +
Sbjct:    9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV-IEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ROA1_PANTR (Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes GN=HNRNPA1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 2
Query:   95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 550
            E  Q    ++G L  + T+E L   F Q G + +  V +D  T   +G+GFV + + E+ D A+      K+ G+ +   +A   + S   GA+L     F+G +  D +E  L D F  +G I    +IM D  +G  RGF F+++D  ++ D  +
Sbjct:    9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV-IEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163          
The following BLAST results are available for this feature:
BLAST of FC930764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
SHEP_DROVI2.241e-1128.74Protein alan shepard OS=Drosophila virilis GN=shep... [more]
SHEP_DROGR2.241e-1128.74Protein alan shepard OS=Drosophila grimshawi GN=sh... [more]
PES4_YEAST2.241e-1126.37Protein PES4 OS=Saccharomyces cerevisiae GN=PES4 P... [more]
ROA1_SCHAM2.927e-1129.61Heterogeneous nuclear ribonucleoprotein A1, A2/B1 ... [more]
RBM39_PONAB2.927e-1127.17RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE... [more]
RBM39_HUMAN2.927e-1127.17RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE... [more]
HNRDL_MOUSE2.927e-1131.65Heterogeneous nuclear ribonucleoprotein D-like OS=... [more]
HNRDL_HUMAN2.927e-1131.65Heterogeneous nuclear ribonucleoprotein D-like OS=... [more]
ROA1_RAT3.823e-1129.30Heterogeneous nuclear ribonucleoprotein A1 OS=Ratt... [more]
ROA1_PANTR3.823e-1129.30Heterogeneous nuclear ribonucleoprotein A1 OS=Pan ... [more]

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Properties
Property NameValue
Genbank descriptionC34108G08EF PostHarvP1 Citrus clementina cDNA clone C34108G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930764 ID=FC930764; Name=FC930764; organism=Citrus clementina; type=EST; length=704bp
GAAGTAGAAGAAGAAGAAGTAATAACGAGTAAAAGGCATGACCACTCGAA
TCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGAGA
AATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACTGA
GGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAATGTGT
ATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTGTA
GAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAATAT
GATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGACA
AAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACCCA
GATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTCAT
TGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCGTG
GTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTATT
GAGGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTACTGTCTCATA
TGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGGCAGAGA
GAATTTTGGCGGCAAACATCCGAGTTCCCAGAAGAGTAGCCCACACTTTA
TTTG
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