FC930764
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ROA1_MOUSE (Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus GN=Hnrnpa1 PE=1 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11 Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 2 Query: 95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 550 E Q ++G L + T+E L F Q G + + V +D T +G+GFV + + E+ D A+ K+ G+ + +A + S GA+L F+G + D +E L D F +G I +IM D +G RGF F+++D ++ D + Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV-IEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ROA1_HUMAN (Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens GN=HNRNPA1 PE=1 SV=5) HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11 Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 2 Query: 95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 550 E Q ++G L + T+E L F Q G + + V +D T +G+GFV + + E+ D A+ K+ G+ + +A + S GA+L F+G + D +E L D F +G I +IM D +G RGF F+++D ++ D + Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV-IEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ROA1_BOVIN (Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1 PE=1 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11 Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 2 Query: 95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 550 E Q ++G L + T+E L F Q G + + V +D T +G+GFV + + E+ D A+ K+ G+ + +A + S GA+L F+G + D +E L D F +G I +IM D +G RGF F+++D ++ D + Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV-IEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: RO31_XENLA (Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus laevis PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11 Identity = 45/162 (27.78%), Postives = 78/162 (48.15%), Query Frame = 2 Query: 80 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 550 G E Q ++G L + T++ L E F Q G + + V +D T +G+GFV + E+ D ++ K+ G+ + +A + S GA+L F+G + D +E L D ++G I T ++M D +G RGF F+++D + D + Sbjct: 17 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA-RPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYSESYGKIET-IEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11 Identity = 50/184 (27.17%), Postives = 84/184 (45.65%), Query Frame = 2 Query: 95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----------LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 613 E T + L ++ L E F G V +V + DR + +G +VEF AI + ++ G PI V + +K AN L++G+L ++ E +L F FG I + ++M D +TG S+G+GFI++ E + A+E +NG L R + V + ++ Sbjct: 148 EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAIGLTGQ-RVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRI-ESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: RBM28_MOUSE (RNA-binding protein 28 OS=Mus musculus GN=Rbm28 PE=1 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11 Identity = 55/214 (25.70%), Postives = 93/214 (43.46%), Query Frame = 2 Query: 113 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNM-------IKLYGKPIRVNKASQDKKS-----------------LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANIRVPR 682 T +VG L P + L ELF Q GPV +V ++ + +G+G+V F ED A+K + + + K +R NK+ + +K+ D A L I NL E L F+ +G ++ I + PD G RGF F+ + + + A++ N + + R + V +A KD + A + ++ R P+ Sbjct: 5 TLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITTFEGCKIDVTVAKKKLR-NKSKETRKNENAESPKKEPKHKKAKVADKKARLIIRNLSFKCSEDDLKAVFTHYGTVL-EVNIPKKPD-GKMRGFAFVQFKNLLEAGKALKGANMKEIKGRTVAVDWAVAKDKYKDAQHASAPGVKKSSDRKPK 215
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: RA1L3_HUMAN (Putative heterogeneous nuclear ribonucleoprotein A1-like protein 3 OS=Homo sapiens GN=HNRPA1L3 PE=5 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11 Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 2 Query: 95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 550 E Q ++G L + T+E L F Q G + + V +D T +G+GFV + + E+ D A+ K+ G+ + +A + S GA+L F+G + D +E L D F +G I +IM D +G RGF F+++D ++ D + Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV-IEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: RA1L2_HUMAN (Heterogeneous nuclear ribonucleoprotein A1-like protein 2 OS=Homo sapiens GN=HNRNPA1L2 PE=2 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11 Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 2 Query: 95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 550 E Q ++G L + T+E L F Q G + + V +D T +G+GFV + + E+ D A+ K+ G+ + +A + S GA+L F+G + D +E L D F +G I +IM D +G RGF F+++D ++ D + Sbjct: 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT-TPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV-IEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: CELF4_DANRE (CUG-BP- and ETR-3-like factor 4 OS=Danio rerio GN=brunol4 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11 Identity = 54/177 (30.51%), Postives = 86/177 (48.59%), Query Frame = 2 Query: 119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKL---YGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL---CNRQITVSYAYKKDTKGER 631 ++G + + E+ L LF + G + + V KDR T +H+G F+ + + E A A L+ K +PI+V A + + D LF+G L+ E + F +FG I I+R PD GNS+G F+ Y + + AAI A++G + + V +A DT ER Sbjct: 50 FIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQTALHEQKTLPGMNRPIQVKPADSESRGED--RKLFVGMLNKQQCEDDVRRLFESFGSI-EECTILRGPD-GNSKGCAFVKYSTHAEAQAAISALHGSQTMPGASSSLVVKFA---DTDKER 219
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: RO22_XENLA (Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus laevis PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11 Identity = 42/157 (26.75%), Postives = 77/157 (49.04%), Query Frame = 2 Query: 95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 550 E+ Q ++G L + TEE L + Q G + + V +D + +G+GFV F + D A+ + G+ + +A ++S GA+ LF+G + D +E L + F +G I + +I+ D +G RGFGF++++ + D + Sbjct: 4 EKEQFRKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA-RPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKI-ESTEIITDKQSGKKRGFGFVTFNDHDPVDKIV 158 The following BLAST results are available for this feature:
BLAST of FC930764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 192
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930764 ID=FC930764; Name=FC930764; organism=Citrus clementina; type=EST; length=704bpback to top |