FC930764

Overview
NameFC930764
Unique NameFC930764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ROA1_MOUSE (Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus GN=Hnrnpa1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 2
Query:   95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 550
            E  Q    ++G L  + T+E L   F Q G + +  V +D  T   +G+GFV + + E+ D A+      K+ G+ +   +A   + S   GA+L     F+G +  D +E  L D F  +G I    +IM D  +G  RGF F+++D  ++ D  +
Sbjct:    9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV-IEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ROA1_HUMAN (Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens GN=HNRNPA1 PE=1 SV=5)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 2
Query:   95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 550
            E  Q    ++G L  + T+E L   F Q G + +  V +D  T   +G+GFV + + E+ D A+      K+ G+ +   +A   + S   GA+L     F+G +  D +E  L D F  +G I    +IM D  +G  RGF F+++D  ++ D  +
Sbjct:    9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV-IEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ROA1_BOVIN (Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 2
Query:   95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 550
            E  Q    ++G L  + T+E L   F Q G + +  V +D  T   +G+GFV + + E+ D A+      K+ G+ +   +A   + S   GA+L     F+G +  D +E  L D F  +G I    +IM D  +G  RGF F+++D  ++ D  +
Sbjct:    9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV-IEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: RO31_XENLA (Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 45/162 (27.78%), Postives = 78/162 (48.15%), Query Frame = 2
Query:   80 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 550
            G    E  Q    ++G L  + T++ L E F Q G + +  V +D  T   +G+GFV +   E+ D ++      K+ G+ +   +A   + S   GA+L     F+G +  D +E  L D   ++G I T  ++M D  +G  RGF F+++D  +  D  +
Sbjct:   17 GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA-RPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYSESYGKIET-IEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 50/184 (27.17%), Postives = 84/184 (45.65%), Query Frame = 2
Query:   95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----------LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 613
            E     T +   L  ++    L E F   G V +V +  DR +   +G  +VEF        AI +    ++ G PI V  +  +K      AN           L++G+L  ++ E +L   F  FG I  + ++M D +TG S+G+GFI++   E +  A+E +NG  L  R + V +  ++
Sbjct:  148 EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAIGLTGQ-RVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRI-ESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: RBM28_MOUSE (RNA-binding protein 28 OS=Mus musculus GN=Rbm28 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 55/214 (25.70%), Postives = 93/214 (43.46%), Query Frame = 2
Query:  113 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNM-------IKLYGKPIRVNKASQDKKS-----------------LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANIRVPR 682
            T +VG L P    + L ELF Q GPV   +V  ++ +   +G+G+V F   ED   A+K +         + +  K +R NK+ + +K+                  D  A L I NL     E  L   F+ +G ++    I + PD G  RGF F+ + +   +  A++  N + +  R + V +A  KD   +     A  +  ++ R P+
Sbjct:    5 TLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITTFEGCKIDVTVAKKKLR-NKSKETRKNENAESPKKEPKHKKAKVADKKARLIIRNLSFKCSEDDLKAVFTHYGTVL-EVNIPKKPD-GKMRGFAFVQFKNLLEAGKALKGANMKEIKGRTVAVDWAVAKDKYKDAQHASAPGVKKSSDRKPK 215          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: RA1L3_HUMAN (Putative heterogeneous nuclear ribonucleoprotein A1-like protein 3 OS=Homo sapiens GN=HNRPA1L3 PE=5 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 2
Query:   95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 550
            E  Q    ++G L  + T+E L   F Q G + +  V +D  T   +G+GFV + + E+ D A+      K+ G+ +   +A   + S   GA+L     F+G +  D +E  L D F  +G I    +IM D  +G  RGF F+++D  ++ D  +
Sbjct:    9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV-IEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: RA1L2_HUMAN (Heterogeneous nuclear ribonucleoprotein A1-like protein 2 OS=Homo sapiens GN=HNRNPA1L2 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 46/157 (29.30%), Postives = 77/157 (49.04%), Query Frame = 2
Query:   95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANL-----FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 550
            E  Q    ++G L  + T+E L   F Q G + +  V +D  T   +G+GFV + + E+ D A+      K+ G+ +   +A   + S   GA+L     F+G +  D +E  L D F  +G I    +IM D  +G  RGF F+++D  ++ D  +
Sbjct:    9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT-TPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV-IEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: CELF4_DANRE (CUG-BP- and ETR-3-like factor 4 OS=Danio rerio GN=brunol4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 54/177 (30.51%), Postives = 86/177 (48.59%), Query Frame = 2
Query:  119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKL---YGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL---CNRQITVSYAYKKDTKGER 631
            ++G +   + E+ L  LF + G +  + V KDR T +H+G  F+ + + E A  A   L+  K      +PI+V  A  + +  D    LF+G L+    E  +   F +FG I     I+R PD GNS+G  F+ Y +   + AAI A++G       +  + V +A   DT  ER
Sbjct:   50 FIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQTALHEQKTLPGMNRPIQVKPADSESRGED--RKLFVGMLNKQQCEDDVRRLFESFGSI-EECTILRGPD-GNSKGCAFVKYSTHAEAQAAISALHGSQTMPGASSSLVVKFA---DTDKER 219          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: RO22_XENLA (Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 42/157 (26.75%), Postives = 77/157 (49.04%), Query Frame = 2
Query:   95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 550
            E+ Q    ++G L  + TEE L   + Q G + +  V +D  +   +G+GFV F    + D A+       + G+ +   +A   ++S   GA+     LF+G +  D +E  L + F  +G I  + +I+ D  +G  RGFGF++++  +  D  +
Sbjct:    4 EKEQFRKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA-RPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKI-ESTEIITDKQSGKKRGFGFVTFNDHDPVDKIV 158          
The following BLAST results are available for this feature:
BLAST of FC930764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
ROA1_MOUSE3.823e-1129.30Heterogeneous nuclear ribonucleoprotein A1 OS=Mus ... [more]
ROA1_HUMAN3.823e-1129.30Heterogeneous nuclear ribonucleoprotein A1 OS=Homo... [more]
ROA1_BOVIN3.823e-1129.30Heterogeneous nuclear ribonucleoprotein A1 OS=Bos ... [more]
RO31_XENLA3.823e-1127.78Heterogeneous nuclear ribonucleoprotein A3 homolog... [more]
RBM39_MOUSE3.823e-1127.17RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE... [more]
RBM28_MOUSE3.823e-1125.70RNA-binding protein 28 OS=Mus musculus GN=Rbm28 PE... [more]
RA1L3_HUMAN3.823e-1129.30Putative heterogeneous nuclear ribonucleoprotein A... [more]
RA1L2_HUMAN3.823e-1129.30Heterogeneous nuclear ribonucleoprotein A1-like pr... [more]
CELF4_DANRE3.823e-1130.51CUG-BP- and ETR-3-like factor 4 OS=Danio rerio GN=... [more]
RO22_XENLA6.521e-1126.75Heterogeneous nuclear ribonucleoprotein A2 homolog... [more]

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Properties
Property NameValue
Genbank descriptionC34108G08EF PostHarvP1 Citrus clementina cDNA clone C34108G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930764 ID=FC930764; Name=FC930764; organism=Citrus clementina; type=EST; length=704bp
GAAGTAGAAGAAGAAGAAGTAATAACGAGTAAAAGGCATGACCACTCGAA
TCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGAGA
AATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACTGA
GGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAATGTGT
ATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTGTA
GAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAATAT
GATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGACA
AAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACCCA
GATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTCAT
TGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCGTG
GTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTATT
GAGGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTACTGTCTCATA
TGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGGCAGAGA
GAATTTTGGCGGCAAACATCCGAGTTCCCAGAAGAGTAGCCCACACTTTA
TTTG
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