FC930764

Overview
NameFC930764
Unique NameFC930764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930764_ssr6 microsatellite FC930764_ssr6:6..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4556 contig Ccv1_Contig4556:81..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.506e-19
Identity = 68/192 (35.42%), Postives = 97/192 (50.52%), Query Frame = 2
Query:   95 ERN--QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKK--------------------SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 604
            ERN   D   +VGNL        L ELF +AG V  V V  D++T   +G+GFV   S+E+ + A +  N  +L G+ +RVN     +K                    S D    +++GNL   VD+  L   FS  G +V + K++ D D+G SRGFGF++Y S E  + AIE+++G  L  R I VS A
Sbjct:   80 ERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVV-DAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPA 270          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 6.506e-19
Identity = 62/185 (33.51%), Postives = 94/185 (50.81%), Query Frame = 2
Query:   74 LLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN--RQITVSYAYKKDTK 622
            LLG + A  +      V  L   +T++    LF   G + +  + +D++T    GYGFV +    DAD AI  LN +KL  K I+V+ A     S+   ANL++  L   + +K +   FS +G I+T+ +I+ D  TG SRG GFI +D    ++ AI+ +NGQ        ITV +A     K
Sbjct:   27 LLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMSQKEMEQLFSQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.893e-18
Identity = 59/170 (34.71%), Postives = 94/170 (55.29%), Query Frame = 2
Query:  110 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV--NKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 613
            A+ YVG+L P VTE +L++ F +   + +V + KD  +     YG+  F S +DA+ AI+  N   L GK IRV  +  + D +   VG N+F+ NL   V   +L D F  FG IV+    +   + G SRG+GF+ ++  +A+ AAI+ +N   + +++I V    KK
Sbjct:   24 ASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVG-NVFVKNLPESVTNAVLQDMFKKFGNIVSCK--VATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKK 190          

HSP 2 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 57/185 (30.81%), Postives = 98/185 (52.97%), Query Frame = 2
Query:  119 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 622
            Y+ NLD  V+E+LL E F + G +V++ + KD    L +GY FV F + EDA  A + +N  K   K + V +A                  +++K +   +N+++ N++  V E+ L   FS  G I T+ K+M D + G S+GFGF+ + + E +  A++  +GQ    + + V+ A KK+ +
Sbjct:  204 YMKNLDADVSEDLLREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTI-TSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDR 385          

HSP 3 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 60/177 (33.90%), Postives = 91/177 (51.41%), Query Frame = 2
Query:   92 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDK---KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 613
            A RN     +V NL   VT  +L ++F + G +V+  V         +GYGFV+F  E+ A  AI+ LN   +  K I V K  +     K  +   NL++ NLD DV E LL + F+ FG IV +  I +D +    RG+ F+++D+ E +  A E +NG    ++ + V  A KK
Sbjct:  106 ARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLE-DGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIV-SLAIAKD-ENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKK 279          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.472e-18
Identity = 64/192 (33.33%), Postives = 99/192 (51.56%), Query Frame = 2
Query:   56 PGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGN-SRGFGFISYDSFEASDAAIEAMNGQ--YLCNRQITVSYAYKKDTK 622
            PG    L G + A  +      V  L   +T+E    LF   G + +  + +D++T    GYGFV +    DAD AI  LN +KL  K I+V+ A     S+   ANL++ +L   +++K +   FS +G I+T+ +I+ D  TG+ SRG GFI +D    ++ AI+ +NGQ     +  ITV +A     K
Sbjct:   17 PGSVGILNGTNGAADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR-DANLYVSSLPKTMNQKEMEQLFSQYGRIITS-RILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANNPSQK 206          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.217e-18
Identity = 59/177 (33.33%), Postives = 96/177 (54.24%), Query Frame = 2
Query:   95 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 604
            E  +DA  +VGNL   V  E L  LF QAG V    V  +R T+  +G+GFV   + E+A+ A+++ N   + G+ + VNKA+       +  ++ +    +++GN+   +D+  L   FS  G +V + +++ D +TG SRGFGF++  S      AI  ++GQ L  R I V+ A
Sbjct:  131 EPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVV-SARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVA 306          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.217e-18
Identity = 63/192 (32.81%), Postives = 92/192 (47.92%), Query Frame = 2
Query:  107 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLD--------------------------VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 604
            D   +VGNL   V    L +LF  AG V  V V  D++T   +G+GFV   S  + + A +  N  +L G+P+RVN      K  D                           G  +++GNL   VD+  L   FS  G +V   +++ D D+G S+GFGF++YDS +    AI++++G  L  RQI VS A
Sbjct:   90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVV-EARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 7.193e-18
Identity = 67/204 (32.84%), Postives = 104/204 (50.98%), Query Frame = 2
Query:   89 SAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTKGERHGTPAERILAANIRVPRRVA 691
            S+      T  + N  PQ +T+E L  LF   G + +  + +D++T    GYGFV +   +DA+ AI  LN ++L  K I+V+ A     S+   ANL++  L   + +K L   FS +G I+T+ +I+ D  TG SRG GFI +D    ++ AI+ +NGQ        ITV +A     K   H   ++   + N R P  +A
Sbjct:   59 SSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK-VNHTILSQLYQSPNRRYPGPLA 259          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.193e-18
Identity = 62/181 (34.25%), Postives = 94/181 (51.93%), Query Frame = 2
Query:   89 SAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTK 622
            S       T  + N  PQ +T+E L  LF   G + +  + +D++T    GYGFV +   +DA+ AI  LN ++L  K I+V+ A     S+   ANL++  L   + +K L   FS +G I+T+ +I+ D  TG SRG GFI +D    ++ AI+ +NGQ        ITV +A     K
Sbjct:   31 SGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK 209          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: FCA_ARATH (Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.227e-17
Identity = 65/188 (34.57%), Postives = 102/188 (54.26%), Query Frame = 2
Query:   80 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL-NMIKLYG--KPIRVNKASQDKKSL-DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL---CNRQITVSYAYKKDTK 622
            G   ++R+     +VG++    TEE +   F Q G V+ V + KD+ T   QG  FV++ + +DAD AI+ L N I L G   P++V  A  +++ +  +   LF+G+L+    EK + + F  FG  V +  +MRD +   SRG GF+ Y S E + AAI+ +NG Y    CN+ + V +A  K  K
Sbjct:  110 GTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFG-HVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPK 295          
BLAST of FC930764 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.227e-17
Identity = 62/186 (33.33%), Postives = 96/186 (51.61%), Query Frame = 2
Query:   83 QHSAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTKGER 631
            Q  A  +   T  + N  PQ +T+E    LF   G + +  + +D++T    GYGFV +   +DA+ AI  LN ++L  K I+V+ A     S+   ANL++  L   + +K L   FS +G I+T+ +I+ D  TG SRG GFI +D    ++ AI+ +NGQ        ITV +A     K  +
Sbjct:   29 QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQ 212          
The following BLAST results are available for this feature:
BLAST of FC930764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
ROC1_NICPL6.506e-1935.4230 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ELAV3_HUMAN6.506e-1933.51ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1... [more]
PABPX_ARATH1.893e-1834.71Probable polyadenylate-binding protein At2g36660 O... [more]
ELAV3_XENTR2.472e-1833.33ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl... [more]
ROC4_NICSY4.217e-1833.3331 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_ARATH4.217e-1832.81Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
ELAV2_XENTR7.193e-1832.84ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl... [more]
ELAV2_RAT7.193e-1834.25ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2... [more]
FCA_ARATH1.227e-1734.57Flowering time control protein FCA OS=Arabidopsis ... [more]
ELAV4_RAT1.227e-1733.33ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34108G08EF PostHarvP1 Citrus clementina cDNA clone C34108G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930764 ID=FC930764; Name=FC930764; organism=Citrus clementina; type=EST; length=704bp
GAAGTAGAAGAAGAAGAAGTAATAACGAGTAAAAGGCATGACCACTCGAA
TCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGAGA
AATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACTGA
GGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAATGTGT
ATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTGTA
GAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAATAT
GATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGACA
AAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACCCA
GATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTCAT
TGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCGTG
GTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTATT
GAGGCAATGAATGGCCAATACCTTTGCAACCGTCAAATTACTGTCTCATA
TGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGGCAGAGA
GAATTTTGGCGGCAAACATCCGAGTTCCCAGAAGAGTAGCCCACACTTTA
TTTG
back to top