FC930769

Overview
NameFC930769
Unique NameFC930769
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig825 contig Ccv1_Contig825:203..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO_CHLTR (Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.191e-17
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 2
Query:  143 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 400
            A  L+++DF A WC PCK+++P+L  LA +LP V  LKVD+D     AE+++V ++PT +L K+GK +ER VG K KD L   + KH
Sbjct:   15 ASGLVLIDFFAEWCGPCKMLTPVLEALAAELPHVTILKVDIDSSPRPAEQYSVSSIPTLILFKDGKEVERSVGLKDKDSLIKLISKH 101          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.156e-16
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 2
Query:  137 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP-AVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 400
            +A  KL+V+DF A WC PCK+++P L ELA +    V+ LKV+VDE + +  E+ V +MPTFV  K G VLE  VG   D+L   +EKH
Sbjct:   17 LAEDKLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGGNVLELFVGCNSDKLAKLMEKH 105          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO_CHLMU (Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.510e-16
Identity = 41/87 (47.13%), Postives = 58/87 (66.67%), Query Frame = 2
Query:  143 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 400
            A  L++VDF A WC PCK+++P+L  LA +LP V  LK+D+D     AE++ V ++PT +L K+GK +ER VG K KD L   + KH
Sbjct:   15 ASGLVLVDFFAEWCGPCKMLTPVLEALAAELPYVTILKLDIDASPRPAEQFGVSSIPTLILFKDGKEVERSVGLKDKDSLVKLISKH 101          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO_HORSE (Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 1.973e-16
Identity = 37/85 (43.53%), Postives = 59/85 (69.41%), Query Frame = 2
Query:  140 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 394
            A +KL+VVDF+A+WC PCK++ P    L++K   V+FL+VDVD+ + VA E  V+ MPTF   K+G+ ++   GA K++L+  ++
Sbjct:   18 AGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVDEFSGANKEKLEATIK 102          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO1_CAEEL (Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.576e-16
Identity = 37/85 (43.53%), Postives = 57/85 (67.06%), Query Frame = 2
Query:  146 KKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 400
            +K+I++DF A+WC PCK ++P+  ELA     +IF KVDVDE + +  ++ V+ MPTF+ TK G  +E + G  +DEL+  V +H
Sbjct:   27 EKIIILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVEDELRQKVLEH 111          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO_SHEEP (Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.365e-16
Identity = 37/86 (43.02%), Postives = 58/86 (67.44%), Query Frame = 2
Query:  140 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEK 397
            A +KL+VVDF+A+WC PCK++ P    L++K   V+FL+VDVD+ + VA E  V+ MPTF   K+G+ +    GA K++L+  + +
Sbjct:   18 AGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVSEFSGANKEKLEATINE 103          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: TRX1_YEAST (Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 4.395e-16
Identity = 38/90 (42.22%), Postives = 60/90 (66.67%), Query Frame = 2
Query:  122 QLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAV 391
            +    IA  KL+VVDF A+WC PCK+++P++ + +++ P   F K+DVDEL  VA++  V AMPT +L K GK + ++VGA    ++ A+
Sbjct:   10 EFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAI 99          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO_PIG (Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 4.395e-16
Identity = 37/86 (43.02%), Postives = 58/86 (67.44%), Query Frame = 2
Query:  140 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEK 397
            A +KL+VVDF+A+WC PCK++ P    L++K   V+FL+VDVD+ + VA E  V+ MPTF   K+G+ +    GA K++L+  + +
Sbjct:   18 AGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO_OPHHA (Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 4.395e-16
Identity = 36/87 (41.38%), Postives = 57/87 (65.52%), Query Frame = 2
Query:  140 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 400
            A  KLIVVDF+A+WC PCK++ P    + +K P V+F+++DVD+ + VA    V+ MPTF   K  + +    GA K++L+ A++K+
Sbjct:   18 AGSKLIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVDDAQDVASHCDVKCMPTFQFYKNNEKVHEFSGANKEKLEEAIKKY 104          
BLAST of FC930769 vs. ExPASy Swiss-Prot
Match: THIO_HUMAN (Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 5.739e-16
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  140 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEK 397
            A  KL+VVDF+A+WC PCK++ P    L++K   VIFL+VDVD+ + VA E  V+ MPTF   K+G+ +    GA K++L+  + +
Sbjct:   18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
The following BLAST results are available for this feature:
BLAST of FC930769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
THIO_CHLTR5.191e-1747.13Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 ... [more]
THIOT_DROME1.156e-1648.31Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]
THIO_CHLMU1.510e-1647.13Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV... [more]
THIO_HORSE1.973e-1643.53Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3[more]
THIO1_CAEEL2.576e-1643.53Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 P... [more]
THIO_SHEEP3.365e-1643.02Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2[more]
TRX1_YEAST4.395e-1642.22Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 ... [more]
THIO_PIG4.395e-1643.02Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3[more]
THIO_OPHHA4.395e-1641.38Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3[more]
THIO_HUMAN5.739e-1644.19Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC34108H01EF PostHarvP1 Citrus clementina cDNA clone C34108H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930769 ID=FC930769; Name=FC930769; organism=Citrus clementina; type=EST; length=566bp
GAAAACACAGAAACAAATATAAAGAAATCAGAACAGAGAAGTAATTTAAC
TTGTGATCATAATTAAGATGGCCGAGGAGGGACAAGTGATCAGCTGCCAC
ACTGTTGAATCCTGGAACGAGCAGCTCCAAAAGGGCATTGCGGCAAAGAA
ACTGATAGTGGTGGATTTTACGGCTTCATGGTGCCCGCCATGCAAGTTGA
TGTCTCCAATTTTGAGTGAATTGGCGAAGAAGCTGCCCGCTGTCATATTC
TTGAAGGTGGATGTTGATGAATTGAAGTCCGTCGCTGAGGAATGGGCTGT
GGAAGCCATGCCGACCTTTGTACTGACGAAAGAAGGCAAAGTCCTGGAGA
GGATTGTGGGAGCGAAGAAAGATGAGCTGCAGCTGGCTGTCGAAAAGCAC
GCAACAACTGTTGAGAATGCAACTACTGCTAATGCTTGATTGATGCGTAC
ATGAATCTCATTGGTCTTTTATTGTAAGGTGTGTGTTTGTGGTTGCTTAA
TGTAAGAATATGGTACCATGTTTAACAGGCCTGTATATACGAATAAATGA
CAATCTTCTAACAAAA
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