FC930772

Overview
NameFC930772
Unique NameFC930772
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length441
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13662 contig Ccv1_Contig13662:36..476. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA_HEBCY (Glutamine synthetase OS=Hebeloma cylindrosporum GN=GLN1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.935e-23
Identity = 54/97 (55.67%), Postives = 66/97 (68.04%), Query Frame = 3
Query:  147 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 437
            DKI AEY+W+ G G  +RSK  T+   V+D   L  W++DGSST QAPG DS+V L P AIFKDPFR G+NILV+ + Y   G P  TN RH AAK+
Sbjct:   20 DKIQAEYVWVDGDG-GLRSKTTTVSKKVTDIGSLRIWDFDGSSTNQAPGHDSDVYLRPAAIFKDPFRGGDNILVLAETYNSDGTPNRTNFRHHAAKV 115          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA_AGABI (Glutamine synthetase OS=Agaricus bisporus GN=glnA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.527e-23
Identity = 54/98 (55.10%), Postives = 66/98 (67.35%), Query Frame = 3
Query:  147 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 440
            DKI AEY+WI G G  +R K  T+   V+D  +L  W++DGSST QAPG DS+V L P AIFKDPFR G+NILV+ + Y   G P  TN RH A K+F
Sbjct:   20 DKIQAEYVWIDGDG-GLRCKTTTVSKKVTDIGQLRIWDFDGSSTNQAPGHDSDVYLRPAAIFKDPFRGGDNILVLAETYNNDGTPNRTNHRHHAKKVF 116          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA_TUBBO (Glutamine synthetase OS=Tuber borchii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.630e-23
Identity = 53/95 (55.79%), Postives = 65/95 (68.42%), Query Frame = 3
Query:  153 IIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 437
            I+AEYIWI G+   +RSK +TL    S    LP+WN+DGSSTGQAPGEDS++ L P AIF DPFR G+NILV+ + +   G P   N RH  AKI
Sbjct:   26 ILAEYIWIDGAN-GVRSKTKTLFKKPSSVEDLPEWNFDGSSTGQAPGEDSDIYLRPVAIFPDPFRMGDNILVLAECWNADGSPNKFNHRHECAKI 119          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA_PANAR (Glutamine synthetase OS=Panulirus argus PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.766e-22
Identity = 48/90 (53.33%), Postives = 63/90 (70.00%), Query Frame = 3
Query:  150 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKR 419
            K  A YIW+ G+G ++RSK RTL      PS+LP WN+DGSSTGQA   +S+V LYP A+++DPFR GNN LV+C+ Y    +P  TN+R
Sbjct:   22 KCQAMYIWVDGTGENLRSKTRTLNFTPKSPSELPIWNFDGSSTGQAERSNSDVYLYPVAVYRDPFRLGNNKLVLCETYKYNKKPADTNQR 111          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA_NEUCR (Glutamine synthetase OS=Neurospora crassa GN=gln-1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.766e-22
Identity = 54/98 (55.10%), Postives = 66/98 (67.35%), Query Frame = 3
Query:  150 KIIAEYIWIGGSGMDMRSKARTLPGPVSD--PSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 437
            ++IAEYIWI   G   RSK+RTLP   S   P +LP WN+DGSSTGQAPGE+S+V L P A+F DPFR   NILV+ + +   G P   N RH AAK+
Sbjct:   25 QLIAEYIWIDSEG-GTRSKSRTLPEKESQYLPEELPIWNFDGSSTGQAPGENSDVYLKPVAVFPDPFRGSPNILVLSECWNADGTPNKFNHRHEAAKL 121          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA_DEBHA (Glutamine synthetase OS=Debaryomyces hansenii GN=GLN1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 6.224e-22
Identity = 48/96 (50.00%), Postives = 65/96 (67.71%), Query Frame = 3
Query:  150 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 437
            K++AEY+WI   G + RSK +TL    S    LP+WN+DGSSTGQAPG DS+V L P A + DPFR+G+NI+V+ + +   G P   N RH +AK+
Sbjct:   22 KVLAEYVWIDADG-NSRSKCKTLDKKPSSVEDLPEWNFDGSSTGQAPGHDSDVYLRPVAFYADPFRKGDNIIVLTECWNNDGTPNKFNHRHESAKL 116          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA_SUIBO (Glutamine synthetase OS=Suillus bovinus GN=GLNA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.387e-21
Identity = 50/97 (51.55%), Postives = 64/97 (65.98%), Query Frame = 3
Query:  147 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 437
            DK+ AEY+WI G G  +RSK  T+    +D  +L  W++DGSST QAPG DS+V L P AIFKDPFR G+NILV+ + +   G P  TN RH   K+
Sbjct:   20 DKVQAEYVWIDGDG-GLRSKTMTMTKKTTDIGQLRIWDFDGSSTNQAPGGDSDVYLRPAAIFKDPFRGGDNILVLAETFNNDGTPNRTNHRHHTKKV 115          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA_EMENI (Glutamine synthetase OS=Emericella nidulans GN=glnA PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.811e-21
Identity = 48/95 (50.53%), Postives = 65/95 (68.42%), Query Frame = 3
Query:  153 IIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 437
            ++AEYIWI   G   RSK +TL    S   +LP+WN+DGSST QAPG++S+V L P A++ DPFRRG+NILV+C+ +   G P   N RH  A++
Sbjct:   12 VMAEYIWIDAHG-GTRSKTKTLSKAPSSVDELPEWNFDGSSTAQAPGDNSDVYLRPVAMYPDPFRRGDNILVLCETWDSDGSPNKFNYRHDCARL 105          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA_AMAMU (Glutamine synthetase OS=Amanita muscaria GN=GLN1 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 4.034e-21
Identity = 51/96 (53.12%), Postives = 63/96 (65.62%), Query Frame = 3
Query:  150 KIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 437
            K  AEY+WI G G  +RSK  T+   V+D S+L  W++DGSST QAP  +S+V L P AIFKDPFR G NILV+ + Y   G P  TN RH  AK+
Sbjct:   21 KFHAEYVWIDGDG-GLRSKTTTVDQKVTDISQLRVWDFDGSSTNQAPSGNSDVYLRPSAIFKDPFRGGENILVLSETYNNDGTPNRTNHRHHTAKV 115          
BLAST of FC930772 vs. ExPASy Swiss-Prot
Match: GLNA_COLGL (Glutamine synthetase OS=Colletotrichum gloeosporioides GN=GLN1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.269e-21
Identity = 50/95 (52.63%), Postives = 62/95 (65.26%), Query Frame = 3
Query:  153 IIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 437
            I+AEYIWI   G + RSK+RTL      P  LP WN+DGSSTGQAPG++S+V L P A+F DPFR   NILV+ + +   G P   N RH  AK+
Sbjct:   26 IMAEYIWIDADG-ETRSKSRTLKEKEYTPEDLPMWNFDGSSTGQAPGDNSDVYLKPVAVFPDPFRGSPNILVLSECWNADGTPNKYNYRHECAKL 119          
The following BLAST results are available for this feature:
BLAST of FC930772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GLNA_HEBCY1.935e-2355.67Glutamine synthetase OS=Hebeloma cylindrosporum GN... [more]
GLNA_AGABI2.527e-2355.10Glutamine synthetase OS=Agaricus bisporus GN=glnA ... [more]
GLNA_TUBBO5.630e-2355.79Glutamine synthetase OS=Tuber borchii GN=GLN1 PE=2... [more]
GLNA_PANAR4.766e-2253.33Glutamine synthetase OS=Panulirus argus PE=2 SV=1[more]
GLNA_NEUCR4.766e-2255.10Glutamine synthetase OS=Neurospora crassa GN=gln-1... [more]
GLNA_DEBHA6.224e-2250.00Glutamine synthetase OS=Debaryomyces hansenii GN=G... [more]
GLNA_SUIBO1.387e-2151.55Glutamine synthetase OS=Suillus bovinus GN=GLNA PE... [more]
GLNA_EMENI1.811e-2150.53Glutamine synthetase OS=Emericella nidulans GN=gln... [more]
GLNA_AMAMU4.034e-2153.13Glutamine synthetase OS=Amanita muscaria GN=GLN1 P... [more]
GLNA_COLGL5.269e-2152.63Glutamine synthetase OS=Colletotrichum gloeosporio... [more]

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Properties
Property NameValue
Genbank descriptionC34108H05EF PostHarvP1 Citrus clementina cDNA clone C34108H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930772 ID=FC930772; Name=FC930772; organism=Citrus clementina; type=EST; length=441bp
GGTTCACGTCTCTGTGTAGCACATTAACATCCCTTCAATCACAGCAATCT
CATTACCAGTTTCTTTGTTGTGTTAAGAGACTAAAGAGTCTTCGAAACAT
GTCTCTGCTCTCAGATCTCCTTAACCTTAACCTCTCAGAATCCACTGACA
AGATCATCGCTGAGTACATATGGATCGGTGGATCTGGCATGGACATGAGG
AGCAAAGCAAGGACTCTTCCCGGTCCCGTTAGTGATCCTTCCAAGCTGCC
TAAGTGGAATTATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAAGATA
GTGAAGTGATCCTCTATCCTCAAGCTATTTTCAAGGATCCATTCAGGAGA
GGCAACAATATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGAGAACC
AATTCCAACAAACAAAAGACATGCAGCTGCCAAGATTTTCA
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