FC930775

Overview
NameFC930775
Unique NameFC930775
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length151
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.632e-14
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAE+
Sbjct:    6 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEI 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.607e-14
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            VELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEV
Sbjct:    6 VELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.607e-14
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            VELKRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEV
Sbjct:    6 VELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.639e-13
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            VELKRIENKI+RQVTFAKRRNGLLKKAYELSVLCDAEV
Sbjct:    6 VELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.639e-13
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            VELKRIENKI+RQVTFAKRRNGLLKKAYELSVLCDAEV
Sbjct:    6 VELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.639e-13
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            VE+KRIENKINRQVTF+KRRNGLLKKAYELSVLCDAEV
Sbjct:    6 VEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.140e-13
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            VELKRIE KINRQVTFAKRRNGLLKKAYELSVLCDAEV
Sbjct:    6 VELKRIEGKINRQVTFAKRRNGLLKKAYELSVLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.651e-13
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            VELKRIENKI+RQVTFAKRRNGLLKKAYELS+LCDAEV
Sbjct:    6 VELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.651e-13
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            VELKRIENKI+RQVTFAKRRNGLLKKAYELS+LCDAEV
Sbjct:    6 VELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.387e-12
Identity = 34/38 (89.47%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            V+LKRIENKINRQVTF+KRRNGLLKKA+E+SVLCDAEV
Sbjct:    6 VQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEV 43          
The following BLAST results are available for this feature:
BLAST of FC930775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
AGL3_ARATH5.632e-1497.37Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
MADS6_ORYSJ9.607e-1497.37MADS-box transcription factor 6 OS=Oryza sativa su... [more]
MAD17_ORYSJ9.607e-1497.37MADS-box transcription factor 17 OS=Oryza sativa s... [more]
MADS5_ORYSJ1.639e-1397.37MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI1.639e-1397.37MADS-box transcription factor 5 OS=Oryza sativa su... [more]
AGL6_ARATH1.639e-1394.74Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]
AGL9_SOLLC2.140e-1397.37Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
MADS1_ORYSJ3.651e-1394.74MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS1_ORYSI3.651e-1394.74MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MAD15_ORYSJ1.387e-1289.47MADS-box transcription factor 15 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC34108H08EF PostHarvP1 Citrus clementina cDNA clone C34108H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930775 ID=FC930775; Name=FC930775; organism=Citrus clementina; type=EST; length=151bp
GGAAGAAGAAAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGTTGAAGAG
GATAGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAATG
GCCTATTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTT
G
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