FC930775

Overview
NameFC930775
Unique NameFC930775
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length151
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15273 contig Ccv1_Contig15273:29..179. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.036e-12
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            V L+RIENKI+RQVTFAKRRNGLLKKAYELS+LCDAEV
Sbjct:    6 VVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.036e-12
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            +E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEV
Sbjct:    6 IEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.272e-12
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            +E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEV
Sbjct:    6 IEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV 43          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.272e-12
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            +E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEV
Sbjct:   22 IEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV 59          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.272e-12
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            +E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEV
Sbjct:   22 IEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV 59          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.272e-12
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            +E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEV
Sbjct:   22 IEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV 59          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.272e-12
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            +E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEV
Sbjct:   22 IEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV 59          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.272e-12
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            +E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEV
Sbjct:   22 IEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV 59          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.272e-12
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            +E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEV
Sbjct:   22 IEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV 59          
BLAST of FC930775 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.272e-12
Identity = 33/38 (86.84%), Postives = 38/38 (100.00%), Query Frame = 1
Query:   37 VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV 150
            V+LKRIENKINRQVTF+KRR+GLLKKA+E+SVLCDAEV
Sbjct:    6 VQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEV 43          
The following BLAST results are available for this feature:
BLAST of FC930775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
MAD34_ORYSJ4.036e-1289.47MADS-box transcription factor 34 OS=Oryza sativa s... [more]
AGL11_ARATH4.036e-1286.84Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
MADS3_ORYSJ5.272e-1286.84MADS-box transcription factor 3 OS=Oryza sativa su... [more]
AG_TOBAC5.272e-1286.84Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AG_SOLLC5.272e-1286.84Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
AG_PETHY5.272e-1286.84Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
AG_PANGI5.272e-1286.84Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
AG_BRANA5.272e-1286.84Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
AG_ARATH5.272e-1286.84Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
AGL8_SOLTU5.272e-1286.84Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]

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Properties
Property NameValue
Genbank descriptionC34108H08EF PostHarvP1 Citrus clementina cDNA clone C34108H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930775 ID=FC930775; Name=FC930775; organism=Citrus clementina; type=EST; length=151bp
GGAAGAAGAAAGGAGAAGAAAATGGGAAGGGGTAGGGTTGAGTTGAAGAG
GATAGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAATG
GCCTATTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTT
G
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