FC930781

Overview
NameFC930781
Unique NameFC930781
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PP362_ARATH (Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 1.503e-11
Identity = 24/86 (27.91%), Postives = 41/86 (47.67%), Query Frame = 1
Query:  394 VV*GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLV 651
            V+ G  P+ VTY+  I  + +DG  +EA +    M+  G  P+   Y T++    + G  E+A+   +E    G  PN  T  + +
Sbjct:  341 VLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFI 426          

HSP 2 Score: 42.743 bits (99), Expect = 1.503e-11
Identity = 32/133 (24.06%), Postives = 59/133 (44.36%), Query Frame = 2
Query:    2 AFNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCEXXXXXXXXXILAE-MDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEML 397
            ++ +L+ A   +  Y+E   VF +  +  G KP L TYN ++  F +          L E M    I P+A ++  L+    +   +++  +V + M+  G       YN  +    K  +  EA  +L+EM+
Sbjct:  210 SYTSLISAFANSGRYREAVNVFKKMEED-GCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMV 341          
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PP393_ARATH (Pentatricopeptide repeat-containing protein At5g18950 OS=Arabidopsis thaliana GN=At5g18950 PE=2 SV=2)

HSP 1 Score: 44.669 bits (104), Expect = 1.525e-11
Identity = 31/130 (23.85%), Postives = 50/130 (38.46%), Query Frame = 2
Query:    5 FNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEM 394
            +  ++  L + K   E   +F    K  G  PD   Y  +I+ FCE         +  EM +K ++PN  ++  ++ G +K  +   V      M R G    +   N  I   C   K  EA  +   M
Sbjct:  286 YQKIIKGLCMNKKQLEAYCIFKNL-KDKGYAPDRVVYTTMIRGFCEKGWLGSARKLWFEMIKKGMRPNEFAYNVMIHGHFKRGEISLVEAFYNEMLRNGYGGTMLSCNTMIKGFCSHGKSDEAFEIFKNM 414          

HSP 2 Score: 44.669 bits (104), Expect = 1.525e-11
Identity = 18/48 (37.50%), Postives = 28/48 (58.33%), Query Frame = 1
Query:  403 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMV 546
            G+ PN++TY+  I GFCK+   E+  K Y+ +   GL P+   Y  +V
Sbjct:  418 GVTPNAITYNALIKGFCKENKVEKGLKLYKELKALGLKPSGMAYAALV 465          
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PP209_ARATH (Pentatricopeptide repeat-containing protein At3g02650, mitochondrial OS=Arabidopsis thaliana GN=At3g02650 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.702e-11
Identity = 42/134 (31.34%), Postives = 71/134 (52.99%), Query Frame = 2
Query:    5 FNALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLC-KLRKCAEAKALLDEMLSK 403
            FN ++ A +   D  E K V ++  ++ G+KPD+ TY  +I  + +         ILAE  +K  K +  ++ AL+ G+ K E+Y++  K+L  M+R+G++     YN  I S C K     +A+ L +EM  K
Sbjct:  410 FNLVVHACSKTGDLDEAKEV-LKLMESRGLKPDVYTYTVIISGYAKGGMMDEAQEILAEAKKKHKKLSPVTYHALIRGYCKIEEYDEALKLLNEMDRFGVQPNADEYNKLIQSFCLKALDWEKAEVLFEEMKQK 542          
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PP360_ARATH (Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 1.957e-11
Identity = 26/103 (25.24%), Postives = 49/103 (47.57%), Query Frame = 2
Query:   89 GIKPDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEML 397
            G+  ++ T N ++ A C+          L+++  K + P+  ++  L++ +  +   E+  +++  M   G   GV  YN  I+ LCK  K   AK +  EML
Sbjct:  230 GVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEML 332          

HSP 2 Score: 39.2762 bits (90), Expect = 1.957e-11
Identity = 20/85 (23.53%), Postives = 39/85 (45.88%), Query Frame = 1
Query:  403 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTG 657
            G+ P+S TY   +   CK G+  E +K +  M +  + P+   + +M+    + G+ + AL +       G +P+      L+ G
Sbjct:  335 GLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQG 419          
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PP141_ARATH (Pentatricopeptide repeat-containing protein At2g01740 OS=Arabidopsis thaliana GN=At2g01740 PE=2 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 1.972e-11
Identity = 23/87 (26.44%), Postives = 43/87 (49.43%), Query Frame = 1
Query:  403 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLA 663
            GM+ +   Y   I G C +G  +EA +    M  S L P+  ++ TM+    K G  + A+    + I +G+ P+   + +++ G+A
Sbjct:  298 GMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIA 384          

HSP 2 Score: 41.9726 bits (97), Expect = 1.972e-11
Identity = 25/100 (25.00%), Postives = 40/100 (40.00%), Query Frame = 2
Query:   98 PDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEML 397
            P++ TY+  I  FC+             M R ++ PN  +F  L+ G+ K    E    + + M R  M   V  Y   I   CK  +   A+ +   M+
Sbjct:  161 PNVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMV 260          
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PP155_ARATH (Pentatricopeptide repeat-containing protein At2g15980 OS=Arabidopsis thaliana GN=At2g15980 PE=2 SV=1)

HSP 1 Score: 44.669 bits (104), Expect = 1.978e-11
Identity = 23/67 (34.33%), Postives = 39/67 (58.21%), Query Frame = 2
Query:  197 IKPNASSFGALVAGFYKEEKYEDVNKV-LQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEM 394
            IKPNA++F +++  FY+E + E V ++  +M E  G    V  YNV + + C     +EA+ + +EM
Sbjct:  241 IKPNATTFNSMMVSFYREGETEMVERIWREMEEEVGCSPNVYSYNVLMEAYCARGLMSEAEKVWEEM 307          

HSP 2 Score: 44.2838 bits (103), Expect = 1.978e-11
Identity = 26/86 (30.23%), Postives = 43/86 (50.00%), Query Frame = 1
Query:  403 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGL 660
            G+  + V Y+  I G C +    +AK+ +R M   G+      Y  +V   CK GD ++ L   +E   KG+  +  T+++LV GL
Sbjct:  311 GVVYDIVAYNTMIGGLCSNFEVVKAKELFRDMGLKGIECTCLTYEHLVNGYCKAGDVDSGLVVYREMKRKGFEADGLTIEALVEGL 396          
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PPR41_ARATH (Putative pentatricopeptide repeat-containing protein At1g13630 OS=Arabidopsis thaliana GN=At1g13630 PE=3 SV=2)

HSP 1 Score: 45.8246 bits (107), Expect = 2.535e-11
Identity = 25/86 (29.07%), Postives = 43/86 (50.00%), Query Frame = 1
Query:  403 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGL 660
            G+ P+  T++  IYG+CK  N  EA+K   ++   GL+P+   Y T++      G+ ++     +E  A+G  P   T   +  GL
Sbjct:  512 GITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTLMDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGL 597          

HSP 2 Score: 42.743 bits (99), Expect = 2.535e-11
Identity = 28/101 (27.72%), Postives = 43/101 (42.57%), Query Frame = 2
Query:   80 KTYGIKPDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKAL 382
            K  G+ PDL  Y+ VI   C+         +  EM  K I PN+ + GAL+ G  ++    +   +L  +   G    + +YN+ I    K     EA  L
Sbjct:  404 KADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEMCDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCIEEALEL 504          
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PP112_ARATH (Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1)

HSP 1 Score: 49.2914 bits (116), Expect = 3.331e-11
Identity = 27/108 (25.00%), Postives = 48/108 (44.44%), Query Frame = 2
Query:   80 KTYGIKPDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK 403
            K  G +PD+  Y  +I A C+            EM++++ KP+   F +L+ G   E+K  D  +  +  +  G       YN  + + C  ++  +A   +DEM  K
Sbjct:  259 KDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLK 366          

HSP 2 Score: 38.891 bits (89), Expect = 3.331e-11
Identity = 26/91 (28.57%), Postives = 39/91 (42.86%), Query Frame = 1
Query:  403 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGVSK 675
            G+ PN+ TY   ++   +    +EA + Y+ MS     P  S Y  MV   C     + A+    E   KG +P      SL+T L   +K
Sbjct:  367 GVGPNARTYDIILHHLIRMQRSKEAYEVYQTMS---CEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENK 454          
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PPR5_ARATH (Putative pentatricopeptide repeat-containing protein At1g02420 OS=Arabidopsis thaliana GN=At1g02420 PE=3 SV=2)

HSP 1 Score: 63.5438 bits (153), Expect = 5.619e-11
Identity = 33/118 (27.97%), Postives = 58/118 (49.15%), Query Frame = 2
Query:   50 EVKRVFIEFPKTYGIKPDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK 403
            E    F E  K  G+KPD+ TYN +I  +C+         ++ +M  +   P+  ++  ++ G     + +   +VL+ M+ YG    V+ YN  I + C  R+  +A  L+DEM+ K
Sbjct:  228 EEAEAFFEEMKGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQPDKAREVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKK 345          

HSP 2 Score: 23.8682 bits (50), Expect = 5.619e-11
Identity = 13/72 (18.06%), Postives = 30/72 (41.67%), Query Frame = 1
Query:  403 GMKPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGW 618
            G+ PN+ TY+ F        +   + + Y  M  +   PN+     ++    +    + A+   ++ + KG+
Sbjct:  346 GLSPNATTYNLFFRVLSLANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHEKVDMAMRLWEDMVVKGF 417          
BLAST of FC930781 vs. ExPASy Swiss-Prot
Match: PPR50_ARATH (Putative pentatricopeptide repeat-containing protein At1g19290 OS=Arabidopsis thaliana GN=At1g19290 PE=3 SV=2)

HSP 1 Score: 47.3654 bits (111), Expect = 7.167e-11
Identity = 28/132 (21.21%), Postives = 61/132 (46.21%), Query Frame = 2
Query:    8 NALLLALTIAKDYKEVKRVFIEFPKTYGIKPDLDTYNRVIKAFCEXXXXXXXXXILAEMDRKSIKPNASSFGALVAGFYKEEKYEDVNKVLQMMERYGMKSGVSMYNVRIHSLCKLRKCAEAKALLDEMLSK 403
            N+L+     +    E +++F      + +KPD  TYN ++  +C          +  +M +K + P   ++  L+ G+ +   + DV  + +MM + G+ +     +  + +L KL    EA  L + +L++
Sbjct:  370 NSLINGYCKSGQLVEAEQIFSRM-NDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLAR 500          

HSP 2 Score: 39.6614 bits (91), Expect = 7.167e-11
Identity = 24/87 (27.59%), Postives = 35/87 (40.23%), Query Frame = 1
Query:  409 KPNSVTYSHFIYGFCKDGNFEEAKKFYRIMSNSGLSPNSSVYFTMVYFMCKGGDYETALGFCKESIAKGWVPNFTTMKSLVTGLAGV 669
            KP   TY    +G+ K GN +EA      M   G+ P   +Y T++    K            E  A+G  P   T  +L+TG   +
Sbjct:  538 KPAVQTYQALSHGYYKVGNLKEAFAVKEYMERKGIFPTIEMYNTLISGAFKYRHLNKVADLVIELRARGLTPTVATYGALITGWCNI 624          
The following BLAST results are available for this feature:
BLAST of FC930781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
PP362_ARATH1.503e-1127.91Pentatricopeptide repeat-containing protein At5g02... [more]
PP393_ARATH1.525e-1123.85Pentatricopeptide repeat-containing protein At5g18... [more]
PP209_ARATH1.702e-1131.34Pentatricopeptide repeat-containing protein At3g02... [more]
PP360_ARATH1.957e-1125.24Pentatricopeptide repeat-containing protein At5g01... [more]
PP141_ARATH1.972e-1126.44Pentatricopeptide repeat-containing protein At2g01... [more]
PP155_ARATH1.978e-1134.33Pentatricopeptide repeat-containing protein At2g15... [more]
PPR41_ARATH2.535e-1129.07Putative pentatricopeptide repeat-containing prote... [more]
PP112_ARATH3.331e-1125.00Pentatricopeptide repeat-containing protein At1g71... [more]
PPR5_ARATH5.619e-1127.97Putative pentatricopeptide repeat-containing prote... [more]
PPR50_ARATH7.167e-1121.21Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionC34109A02EF PostHarvP1 Citrus clementina cDNA clone C34109A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930781 ID=FC930781; Name=FC930781; organism=Citrus clementina; type=EST; length=701bp
GGCTTTCAACGCTTTGTTGTTGGCTCTCACGATAGCCAAAGACTACAAAG
AAGTTAAACGGGTATTTATCGAATTTCCCAAGACTTACGGAATCAAGCCG
GATTTGGATACCTACAACAGGGTAATTAAGGCGTTTTGTGAGTCCAGTGA
TTCAAGTTCTGCAGACTCGATTTTGGCTGAAATGGATAGGAAGTCGATTA
AACCAAACGCCTCGAGTTTTGGAGCTTTGGTGGCTGGGTTTTATAAGGAG
GAGAAGTATGAAGATGTGAATAAAGTCTTGCAAATGATGGAAAGATATGG
GATGAAGTCTGGGGTTAGTATGTATAATGTGAGGATTCATAGCCTTTGTA
AGTTAAGAAAGTGTGCAGAAGCTAAGGCATTGCTTGATGAGATGTTGTCT
AAGGAATGAAGCCGAATTCAGTCACTTATAGCCATTTCATTTATGGGTTC
TGCAAAGATGGGAATTTTGAAGAAGCTAAGAAGTTTTATAGGATTATGAG
TAACAGTGGGTTGTCGCCAAATAGCTCTGTATATTTTACTATGGTGTATT
TCATGTGTAAAGGTGGGGATTATGAGACAGCACTGGGCTTCTGCAAGGAG
AGTATAGCGAAGGGTTGGGTGCCTAATTTCACGACTATGAAATCATTGGT
GACTGGGCTGGCTGGTGTTTCAAAGTCAGTGAAGCAAAGAGCTTATTGGC
C
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