FC930782

Overview
NameFC930782
Unique NameFC930782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length656
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_CAEEL (40S ribosomal protein S3a OS=Caenorhabditis elegans GN=rps-1 PE=1 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 6.473e-55
Identity = 109/174 (62.64%), Postives = 131/174 (75.29%), Query Frame = 1
Query:  133 AADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            A DPF++K+WYDIKAP+ F  R VGKTL+ RTQGTKIASEGLK RVFEVSLGDL N  E  +RK +L AEDVQGKNVLTNF  M+ T DKL S+V+KWHTLIEA   VKTTD +TLR+F I FTK+  NQVK+T Y +TS+IR+IR +M   +  +   CDLK +V K I + I
Sbjct:   19 AVDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL-NNSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSI 191          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_ARTSF (40S ribosomal protein S3a OS=Artemia sanfranciscana PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.473e-55
Identity = 107/174 (61.49%), Postives = 133/174 (76.44%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEE--HAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF +KDWYD+KAPS F  R++GKTLV RT GTKIAS+ LK RVFEVSL DL  E E   ++RK RL AE+VQG+ +LTNF GM+FTTDKLRSLV+KW TLIE  VDVKTTD++ LR+FCIGFT++     ++TCYAQ +Q+R IR+KM EI+  + +S DLK  V K I + I
Sbjct:   23 DPFTRKDWYDVKAPSLFTNRDIGKTLVNRTAGTKIASDSLKGRVFEVSLADLQGESEAERSFRKFRLIAEEVQGRYLLTNFHGMDFTTDKLRSLVKKWQTLIECSVDVKTTDSYLLRVFCIGFTQKDQRSQRKTCYAQHTQVRAIRKKMTEIITKEISSGDLKEAVSKLIPDSI 196          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_PICGU (40S ribosomal protein S1 OS=Pichia guilliermondii GN=RPS1 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.442e-54
Identity = 101/172 (58.72%), Postives = 135/172 (78.49%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF +K+W+DIKAP+ F  R VGKTL+ ++ G K A++GLK RV EV+L DL   E+HAYRK++LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V VKT D++ LR+F I FTKR PNQVK+T YAQ+S++R+IR+KM EIM  + ++  L  L +K I EVI
Sbjct:   22 DPFTRKEWFDIKAPTTFENRAVGKTLINKSTGLKNAADGLKGRVIEVNLADLQGSEDHAYRKVKLRVDEVQGKNLLTNFHGIDFTSDKLRSLVRKWQSLVEANVTVKTADDYYLRVFAIAFTKRQPNQVKKTTYAQSSKLREIRKKMMEIMQREVSNSTLAQLTQKLIPEVI 193          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_BRUMA (40S ribosomal protein S3a OS=Brugia malayi GN=Bm1_27225 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.460e-54
Identity = 107/172 (62.21%), Postives = 130/172 (75.58%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF +K+WYDIKAPS F V+++GKTLV RTQGTKIASEGLK RV+EVSLGDL N  E  +RK+RL  EDVQG+  LTNF GM  T DKL S+V+KWHTLIEA V VKT+D + LRLFCIGFTK+   Q+K+T YA++S+IRQIR KM E M  +    DLK +  K + + I
Sbjct:   20 DPFTRKEWYDIKAPSMFNVQHIGKTLVNRTQGTKIASEGLKGRVYEVSLGDL-NNAESEFRKMRLICEDVQGRTCLTNFHGMRLTRDKLCSIVKKWHTLIEANVAVKTSDGYLLRLFCIGFTKKNARQLKKTSYAKSSKIRQIRAKMVEYMQKEVQGSDLKDVCHKLVPDSI 190          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_ANOGA (40S ribosomal protein S3a OS=Anopheles gambiae GN=RpS3A PE=2 SV=3)

HSP 1 Score: 211.846 bits (538), Expect = 2.460e-54
Identity = 108/174 (62.07%), Postives = 130/174 (74.71%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEE--EHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF +KDWYD+KAP+ F+ R VGKTLV RTQGTKIAS+GLK RVFEVSL DL NE   E ++RK +L AE V G++VLTNF GM  TTDKLRS+V+KW TLIE  VDVKTTD F LR+FCIGFT +     ++TCYAQ SQI+ IR KM  I+  +  S DLK +VEK + + I
Sbjct:   23 DPFTRKDWYDVKAPNMFKNRQVGKTLVNRTQGTKIASDGLKGRVFEVSLADLQNEPDAERSFRKFKLVAESVNGRDVLTNFHGMALTTDKLRSMVKKWQTLIECSVDVKTTDGFMLRVFCIGFTIKDSMSQRKTCYAQHSQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSI 196          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A1_PICST (40S ribosomal protein S1-A OS=Pichia stipitis GN=RPS1A PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.460e-54
Identity = 99/172 (57.56%), Postives = 133/172 (77.33%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF +KDW+DIKAPS F  RNVGKTL+ R+ G K A++GLK R+ EV+L DL   E+H+YR ++LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V VKT D++ LR+F + FTKR  NQVK+T YAQ+S++R++R+KM EIM  + ++  L  L  K I EVI
Sbjct:   22 DPFTRKDWFDIKAPSTFENRNVGKTLINRSTGMKNAADGLKGRIVEVNLADLQGSEDHSYRNVKLRVDEVQGKNLLTNFHGLSFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFALAFTKRQANQVKKTTYAQSSKLREVRKKMSEIMQREVSAVTLAQLTSKLIPEVI 193          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_USTMA (40S ribosomal protein S1 OS=Ustilago maydis GN=RPS1 PE=3 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.212e-54
Identity = 103/174 (59.20%), Postives = 130/174 (74.71%), Query Frame = 1
Query:  133 AADPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            A DPF +KDWYDIKAP+ F  RNVGKT V R+QG K A + LK R+ E SL DL  ++E AYRK +L+ + +QG+  LTNF+GM+FT+DKLRSLVRKW +LIEA+ DVKTTD + LR+F I FTK+  NQVK+  YA++S IR IR+KM EI+  +A SCDL+  V K I EVI
Sbjct:   19 AVDPFTRKDWYDIKAPTFFENRNVGKTFVNRSQGLKNADDSLKGRIVEASLADLNKDDEQAYRKFKLKVDGIQGRTCLTNFYGMDFTSDKLRSLVRKWQSLIEAHQDVKTTDGYLLRVFVIAFTKKRANQVKKNTYAKSSHIRAIRQKMFEIVQREANSCDLREFVAKLIPEVI 192          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_AEDAE (40S ribosomal protein S3a OS=Aedes aegypti GN=AAEL005901 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.212e-54
Identity = 106/174 (60.92%), Postives = 130/174 (74.71%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEE--EHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF +KDWYD+KAP+ F  R VGKTLV RTQGT+IAS+GLK RVFEVSL DL N+   E ++RK +L AEDV G+NVL NF GM+ TTDKLRS+V+KW TLIE  VDVKTTD + LR+FCIGFT +     ++TCYAQ SQI++IRRKM  I+     S DLK +V K + + I
Sbjct:   23 DPFTRKDWYDVKAPNMFSNRQVGKTLVNRTQGTRIASDGLKGRVFEVSLADLQNDTDAERSFRKFKLIAEDVHGRNVLCNFHGMDLTTDKLRSMVKKWQTLIECSVDVKTTDGYLLRVFCIGFTIKDSVSQRKTCYAQHSQIKEIRRKMTTIITRDVTSSDLKEVVNKLLPDSI 196          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A_CULQU (40S ribosomal protein S3a OS=Culex quinquefasciatus GN=CPIJ008584 PE=3 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 4.196e-54
Identity = 105/174 (60.34%), Postives = 130/174 (74.71%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEE--EHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF +KDWYD+KAP+ F  R VGKTLV RTQGT+IAS+GLK RVFEVSL DL N+   E ++RK +L AEDV G+NVL NF GM+ TTDKLRS+V+KW TLIE  VDVKTTDN+ LR+FCIGFT +     ++TCYAQ SQI+ IR+ M +I+     S DLK +V K + + I
Sbjct:   23 DPFTRKDWYDVKAPNMFSCRQVGKTLVNRTQGTRIASDGLKGRVFEVSLADLQNDTDAERSFRKFKLIAEDVHGRNVLCNFHGMDLTTDKLRSMVKKWQTLIECSVDVKTTDNYLLRVFCIGFTIKDQVSQRKTCYAQHSQIKAIRKNMTQIITNNVTSSDLKEVVNKLLPDSI 196          
BLAST of FC930782 vs. ExPASy Swiss-Prot
Match: RS3A1_SCHPO (40S ribosomal protein S1-A OS=Schizosaccharomyces pombe GN=rps101 PE=2 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 4.196e-54
Identity = 102/172 (59.30%), Postives = 131/172 (76.16%), Query Frame = 1
Query:  139 DPFAKKDWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVI 654
            DPF++KDWYDIKAP+ F V+NVGKTLV RT G K A++ LK R+ EVSL DL  +EEH++RK++LR ED+QGK+ LT+F G + T+DKLRSLVRKW + IEA   +KTTD +  R+F IGFT R  NQVK+T YAQ+SQIR I +KM +++  QA  C +K LV+K I EVI
Sbjct:   22 DPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDEEHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVI 193          
The following BLAST results are available for this feature:
BLAST of FC930782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
RS3A_CAEEL6.473e-5562.6440S ribosomal protein S3a OS=Caenorhabditis elegan... [more]
RS3A_ARTSF6.473e-5561.4940S ribosomal protein S3a OS=Artemia sanfranciscan... [more]
RS3A_PICGU1.442e-5458.7240S ribosomal protein S1 OS=Pichia guilliermondii ... [more]
RS3A_BRUMA2.460e-5462.2140S ribosomal protein S3a OS=Brugia malayi GN=Bm1_... [more]
RS3A_ANOGA2.460e-5462.0740S ribosomal protein S3a OS=Anopheles gambiae GN=... [more]
RS3A1_PICST2.460e-5457.5640S ribosomal protein S1-A OS=Pichia stipitis GN=R... [more]
RS3A_USTMA3.212e-5459.2040S ribosomal protein S1 OS=Ustilago maydis GN=RPS... [more]
RS3A_AEDAE3.212e-5460.9240S ribosomal protein S3a OS=Aedes aegypti GN=AAEL... [more]
RS3A_CULQU4.196e-5460.3440S ribosomal protein S3a OS=Culex quinquefasciatu... [more]
RS3A1_SCHPO4.196e-5459.3040S ribosomal protein S1-A OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionC34109A03EF PostHarvP1 Citrus clementina cDNA clone C34109A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930782 ID=FC930782; Name=FC930782; organism=Citrus clementina; type=EST; length=656bp
GGGTCTCTTCGCTCAAACGAACGAGCTAGGACTAGGTAGCAGCGGAGCCG
TCTCTTGAGCAGCAGCTGCACAAACATGGCTGTCGGGAAGAACAAGAGGA
TTTCAAAGGGGAAGAAAGGAGGCAAGGAGAAGGCTGCTGATCCGTTTGCC
AAGAAGGACTGGTATGATATCAAGGCTCCATCTTGTTTCCGCGTCAGAAA
TGTTGGCAAGACTCTTGTTACCCGGACTCAGGGTACCAAGATTGCATCAG
AAGGTCTCAAGCACAGAGTGTTTGAGGTATCACTAGGTGATCTTCTCAAT
GAAGAAGAGCATGCTTACAGGAAGATCAGACTGAGAGCTGAAGATGTCCA
AGGGAAGAATGTTTTGACTAACTTCTGGGGCATGAATTTCACTACAGACA
AGCTGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGAAGCTTACGTG
GATGTCAAGACCACTGATAACTTCACATTGAGGTTGTTCTGCATTGGATT
CACCAAGAGACTTCCAAACCAGGTTAAGAGGACTTGCTACGCACAGACCA
GCCAGATTAGACAGATTCGCCGCAAGATGAGGGAGATCATGGTTGCTCAG
GCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAGT
GATTGG
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