FC930788
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_BORBZ (50S ribosomal protein L2 OS=Borrelia burgdorferi (strain ZS7) GN=rplB PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21 Identity = 71/206 (34.47%), Postives = 110/206 (53.40%), Query Frame = 2 Query: 92 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 I +R+G G H RK +R +DF R+ + + VA I +DP R A +A + ++ +K I+ +G+ G + G A + +GN LP+ +IP G V N+E +VG G L R++G YA+I++ D + VKL SG ++I C A IG++ + KAG + ++ +R PKVRGVAMNPV+H Sbjct: 50 ISIRRRGGG-------HKRK----YRLIDFNRRDKFSIPARVASIEYDPNRSANIALLVYKDG-----EKRYIISPKGIKVGDVLESGPNAPIKIGNALPLENIPIGRTVHNIELNVGKGGQLIRSAGGYAMILA--SDGNYVTVKLSSGEMRLIFKKCIATIGEIGNEDYANISIGKAGKS--RWLGRR---PKVRGVAMNPVDH 232
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_BORBU (50S ribosomal protein L2 OS=Borrelia burgdorferi GN=rplB PE=3 SV=2) HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21 Identity = 71/206 (34.47%), Postives = 110/206 (53.40%), Query Frame = 2 Query: 92 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 I +R+G G H RK +R +DF R+ + + VA I +DP R A +A + ++ +K I+ +G+ G + G A + +GN LP+ +IP G V N+E +VG G L R++G YA+I++ D + VKL SG ++I C A IG++ + KAG + ++ +R PKVRGVAMNPV+H Sbjct: 50 ISIRRRGGG-------HKRK----YRLIDFNRRDKFSIPARVASIEYDPNRSANIALLVYKDG-----EKRYIISPKGIKVGDVLESGPNAPIKIGNALPLENIPIGRTVHNIELNVGKGGQLIRSAGGYAMILA--SDGNYVTVKLSSGEMRLIFKKCIATIGEIGNEDYANISIGKAGKS--RWLGRR---PKVRGVAMNPVDH 232
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_SERP5 (50S ribosomal protein L2 OS=Serratia proteamaculans (strain 568) GN=rplB PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21 Identity = 71/224 (31.70%), Postives = 105/224 (46.88%), Query Frame = 2 Query: 35 HQPAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 H P + S S + I + G G H H +R +DF + VV + +DP R A +A V ++ ++ +A +G+ G + G A + VGN LP+R+IP G+ V NVE G G +AR++G Y I++ D ++L SG + +P CRA +G+V + L KAG A R P VRG AMNPV+H Sbjct: 30 HAPLLEKLSKSGGRNNNGRITTRHIGGG-----HKQH------YRLVDFKRNKDGVAAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKVGNALPMRNIPVGSTVHNVEMKPGKGGQIARSAGAYVQIVAR--DGSYVTLRLRSGEMRKVPVDCRATLGEVGNAEHMLRVLGKAGAARW-----RGIRPTVRGTAMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_PELCD (50S ribosomal protein L2 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rplB PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21 Identity = 71/208 (34.13%), Postives = 104/208 (50.00%), Query Frame = 2 Query: 104 RKGAGSVFKSHT---HHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706 R AG + K HT H RK +R +DF + +A I +DP R A +A + +K +A G+ G V ++A + GN L +RSIP G V N+E +G G LAR++G YA+I + + +++LPSG +++ C A +GQV G + +K G A RN W P+ RGVAMNPV+H Sbjct: 43 RNNAGRITKRHTGGGHKRK----YRVIDFRREKKEIPAKIASIEYDPNRSARIALACYADG-----EKRYILAPLGLKVGDVVIASEQADIKPGNALSIRSIPLGTWVHNIELKIGKGGQLARSAGTYAMIAA--KEGKYAQLRLPSGEVRLVLQDCCATVGQV---GNVQHENVKIGKA------GRNRWLGKRPQSRGVAMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_PECCP (50S ribosomal protein L2 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rplB PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21 Identity = 63/182 (34.62%), Postives = 93/182 (51.10%), Query Frame = 2 Query: 161 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 Q+R +DF + VV + +DP R A +A V ++ ++ +A +G+ G + G A + GN LP+R+IP G+ V NVE G G LAR++G Y I++ D ++L SG + + S CRA +G+V + L KAG A R P VRG AMNPV+H Sbjct: 61 QYRLIDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGSYVTLRLRSGEMRKVESDCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_GEOLS (50S ribosomal protein L2 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rplB PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21 Identity = 73/228 (32.02%), Postives = 117/228 (51.32%), Query Frame = 2 Query: 35 HQPAAQAQSL-SPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPA---QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 HQ + + + S + E +++ ++ G + F T +G ++R +DF + VA I +DP R A +A + + +K +A + G V G +A + GN LP+RSIP G ++ N+E +G LAR++G +A ++S + ++VKLPSG +++ C A IGQV L KAG + ++ KR PKVRGVAMNPV+H Sbjct: 15 HQTCSTFEEITSTTPEKSLLVKIKKTGGRNHFGRVTARHQGGGHKQKYRMIDFRRDKRGIPAKVATIEYDPNRSARIALLHYTDG-----EKRYILAPLDLKVGDTVLSGPEADIKPGNSLPLRSIPLGTIIHNIELKIGKGAQLARSAGTFAQLMS--KEGKYSQVKLPSGEVRLVLQDCYATIGQVGNIDHENVCLGKAGRS--RWLGKR---PKVRGVAMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_SYNAS (50S ribosomal protein L2 OS=Syntrophus aciditrophicus (strain SB) GN=rplB PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21 Identity = 63/182 (34.62%), Postives = 99/182 (54.40%), Query Frame = 2 Query: 161 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 ++R +DF + G +A I +DP R A +A V++ +K IA + G+ + G++A + GN +P+R+IP G+++ N+E VG G L R++G Y +++ + +V+LPSG + I CRA IGQV + KAG ++ KR PKVRGV MNPV+H Sbjct: 61 RYRFIDFKREKLDVPGKIASIEYDPNRSARIALVSYEDG-----EKRYIIAPAKVAVGEKIVSGERADIKAGNAMPLRNIPVGSLIHNIELKVGKGGQLIRSAGTYGQLMA--KEGSYAQVRLPSGEMRKIFIDCRATIGQVGNNEHENISVGKAGRT--RWAGKR---PKVRGVVMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_OCEIH (50S ribosomal protein L2 OS=Oceanobacillus iheyensis GN=rplB PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21 Identity = 78/226 (34.51%), Postives = 114/226 (50.44%), Query Frame = 2 Query: 47 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706 A+ + +P K + IR +R G + K H+ G Q+R +DF + G VA I +DP R A +A V + +K IA +G+ GQ + G+ A + +GN LP+ SIP G V+ N+E G G +AR++G A I+ + T V+L SG ++I + CRA IGQV G E L++ G A R+ W P VRG MNP +H Sbjct: 22 AEITTDTPEKSLLSPIR-KRGGRNNQGKLTVRHQGGGHKRQYRIIDFKRDKDGIPGRVATIEYDPNRSANIALVHYADG-----EKRYIIAPKGIKVGQEIESGENADIKLGNALPLGSIPVGTVIHNIELKPGRGGQIARSAGAEAQILGR--EEKYTLVRLSSGEVRLILTTCRATIGQV---GNIEHELVRVGKA------GRSRWKGIRPTVRGSVMNPNDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_MYCS5 (50S ribosomal protein L2 OS=Mycoplasma synoviae (strain 53) GN=rplB PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21 Identity = 71/215 (33.02%), Postives = 105/215 (48.84%), Query Frame = 2 Query: 68 PSKEMGRVIR--AQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 P+K + R+++ A R G + H H + +R +DF + VV I +DP R A + + + +K IA +G+ GQ V G+ A ++VGN LP+ +IPEG + N+E G LAR++G A I+ + + VKL SG + I + CRA +G V G E L+ G A R P VRG MNPV+H Sbjct: 30 PTKSLLRILKNSAGRNNQGKITVRH-HGGRVKRFYRLVDFKRNKDNIPAVVKTIEYDPNRSANICLLAYADG-----EKRYIIAPKGIKVGQKVVSGEGADIIVGNSLPLSNIPEGTFIHNIEMQPGGGAKLARSAGTSAQILGKDDNGKYVVVKLKSGETRRILARCRATVGMV---GNEEYSLVNVGKA--GINRHRGIRPTVRGSVMNPVDH 233
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_LISW6 (50S ribosomal protein L2 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rplB PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21 Identity = 72/223 (32.29%), Postives = 113/223 (50.67%), Query Frame = 2 Query: 47 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA-YHKFRVKRNCWPKVRGVAMNPVEH 706 A+ + +P K + R ++ ++ G + K H G Q+R +DF + G VA I +DP R A +A + + +K IAA+G+ GQ +Y G +A + +GN L ++ IP G VV N+E G G L R++G A ++ + ++L SG ++I + CRA IGQV G + L+ G A ++ KR P VRG MNP +H Sbjct: 22 AEITTSTPEKSLLRPLK-KKAGRNNQGKLTVRHHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAAKGLEVGQTIYSGAEADIKIGNALELKDIPVGTVVHNIEMKPGKGGQLVRSAGTSAQVL--GKEGKYVLIRLNSGEVRMILATCRATIGQV---GNEQHELINIGKAGRSRWMGKR---PTVRGSVMNPNDH 230 The following BLAST results are available for this feature:
BLAST of FC930788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930788 ID=FC930788; Name=FC930788; organism=Citrus clementina; type=EST; length=708bpback to top |