FC930788

Overview
NameFC930788
Unique NameFC930788
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_BORBZ (50S ribosomal protein L2 OS=Borrelia burgdorferi (strain ZS7) GN=rplB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21
Identity = 71/206 (34.47%), Postives = 110/206 (53.40%), Query Frame = 2
Query:   92 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            I  +R+G G       H RK    +R +DF  R+ + +   VA I +DP R A +A + ++       +K   I+ +G+  G  +  G  A + +GN LP+ +IP G  V N+E +VG  G L R++G YA+I++   D +   VKL SG  ++I   C A IG++         + KAG +  ++  +R   PKVRGVAMNPV+H
Sbjct:   50 ISIRRRGGG-------HKRK----YRLIDFNRRDKFSIPARVASIEYDPNRSANIALLVYKDG-----EKRYIISPKGIKVGDVLESGPNAPIKIGNALPLENIPIGRTVHNIELNVGKGGQLIRSAGGYAMILA--SDGNYVTVKLSSGEMRLIFKKCIATIGEIGNEDYANISIGKAGKS--RWLGRR---PKVRGVAMNPVDH 232          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_BORBU (50S ribosomal protein L2 OS=Borrelia burgdorferi GN=rplB PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21
Identity = 71/206 (34.47%), Postives = 110/206 (53.40%), Query Frame = 2
Query:   92 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            I  +R+G G       H RK    +R +DF  R+ + +   VA I +DP R A +A + ++       +K   I+ +G+  G  +  G  A + +GN LP+ +IP G  V N+E +VG  G L R++G YA+I++   D +   VKL SG  ++I   C A IG++         + KAG +  ++  +R   PKVRGVAMNPV+H
Sbjct:   50 ISIRRRGGG-------HKRK----YRLIDFNRRDKFSIPARVASIEYDPNRSANIALLVYKDG-----EKRYIISPKGIKVGDVLESGPNAPIKIGNALPLENIPIGRTVHNIELNVGKGGQLIRSAGGYAMILA--SDGNYVTVKLSSGEMRLIFKKCIATIGEIGNEDYANISIGKAGKS--RWLGRR---PKVRGVAMNPVDH 232          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_SERP5 (50S ribosomal protein L2 OS=Serratia proteamaculans (strain 568) GN=rplB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 71/224 (31.70%), Postives = 105/224 (46.88%), Query Frame = 2
Query:   35 HQPAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            H P  +  S S  +     I  +  G G     H  H      +R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  A + VGN LP+R+IP G+ V NVE   G  G +AR++G Y  I++   D     ++L SG  + +P  CRA +G+V       + L KAG A       R   P VRG AMNPV+H
Sbjct:   30 HAPLLEKLSKSGGRNNNGRITTRHIGGG-----HKQH------YRLVDFKRNKDGVAAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKVGNALPMRNIPVGSTVHNVEMKPGKGGQIARSAGAYVQIVAR--DGSYVTLRLRSGEMRKVPVDCRATLGEVGNAEHMLRVLGKAGAARW-----RGIRPTVRGTAMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_PELCD (50S ribosomal protein L2 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rplB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 71/208 (34.13%), Postives = 104/208 (50.00%), Query Frame = 2
Query:  104 RKGAGSVFKSHT---HHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706
            R  AG + K HT   H RK    +R +DF      +   +A I +DP R A +A   +        +K   +A  G+  G  V   ++A +  GN L +RSIP G  V N+E  +G  G LAR++G YA+I +   +    +++LPSG  +++   C A +GQV   G  +   +K G A       RN W    P+ RGVAMNPV+H
Sbjct:   43 RNNAGRITKRHTGGGHKRK----YRVIDFRREKKEIPAKIASIEYDPNRSARIALACYADG-----EKRYILAPLGLKVGDVVIASEQADIKPGNALSIRSIPLGTWVHNIELKIGKGGQLARSAGTYAMIAA--KEGKYAQLRLPSGEVRLVLQDCCATVGQV---GNVQHENVKIGKA------GRNRWLGKRPQSRGVAMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_PECCP (50S ribosomal protein L2 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21
Identity = 63/182 (34.62%), Postives = 93/182 (51.10%), Query Frame = 2
Query:  161 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            Q+R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + S CRA +G+V       + L KAG A       R   P VRG AMNPV+H
Sbjct:   61 QYRLIDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGSYVTLRLRSGEMRKVESDCRATLGEVGNAEHMLRVLGKAGAARW-----RGVRPTVRGTAMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_GEOLS (50S ribosomal protein L2 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21
Identity = 73/228 (32.02%), Postives = 117/228 (51.32%), Query Frame = 2
Query:   35 HQPAAQAQSL-SPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPA---QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            HQ  +  + + S + E   +++ ++ G  + F   T   +G     ++R +DF      +   VA I +DP R A +A + +        +K   +A   +  G  V  G +A +  GN LP+RSIP G ++ N+E  +G    LAR++G +A ++S   +   ++VKLPSG  +++   C A IGQV         L KAG +  ++  KR   PKVRGVAMNPV+H
Sbjct:   15 HQTCSTFEEITSTTPEKSLLVKIKKTGGRNHFGRVTARHQGGGHKQKYRMIDFRRDKRGIPAKVATIEYDPNRSARIALLHYTDG-----EKRYILAPLDLKVGDTVLSGPEADIKPGNSLPLRSIPLGTIIHNIELKIGKGAQLARSAGTFAQLMS--KEGKYSQVKLPSGEVRLVLQDCYATIGQVGNIDHENVCLGKAGRS--RWLGKR---PKVRGVAMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_SYNAS (50S ribosomal protein L2 OS=Syntrophus aciditrophicus (strain SB) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21
Identity = 63/182 (34.62%), Postives = 99/182 (54.40%), Query Frame = 2
Query:  161 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            ++R +DF      + G +A I +DP R A +A V++        +K   IA   +  G+ +  G++A +  GN +P+R+IP G+++ N+E  VG  G L R++G Y  +++   +    +V+LPSG  + I   CRA IGQV         + KAG    ++  KR   PKVRGV MNPV+H
Sbjct:   61 RYRFIDFKREKLDVPGKIASIEYDPNRSARIALVSYEDG-----EKRYIIAPAKVAVGEKIVSGERADIKAGNAMPLRNIPVGSLIHNIELKVGKGGQLIRSAGTYGQLMA--KEGSYAQVRLPSGEMRKIFIDCRATIGQVGNNEHENISVGKAGRT--RWAGKR---PKVRGVVMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_OCEIH (50S ribosomal protein L2 OS=Oceanobacillus iheyensis GN=rplB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.366e-21
Identity = 78/226 (34.51%), Postives = 114/226 (50.44%), Query Frame = 2
Query:   47 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706
            A+  + +P K +   IR +R G  +  K    H+ G    Q+R +DF      + G VA I +DP R A +A V +        +K   IA +G+  GQ +  G+ A + +GN LP+ SIP G V+ N+E   G  G +AR++G  A I+    +   T V+L SG  ++I + CRA IGQV   G  E  L++ G A       R+ W    P VRG  MNP +H
Sbjct:   22 AEITTDTPEKSLLSPIR-KRGGRNNQGKLTVRHQGGGHKRQYRIIDFKRDKDGIPGRVATIEYDPNRSANIALVHYADG-----EKRYIIAPKGIKVGQEIESGENADIKLGNALPLGSIPVGTVIHNIELKPGRGGQIARSAGAEAQILGR--EEKYTLVRLSSGEVRLILTTCRATIGQV---GNIEHELVRVGKA------GRSRWKGIRPTVRGSVMNPNDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_MYCS5 (50S ribosomal protein L2 OS=Mycoplasma synoviae (strain 53) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21
Identity = 71/215 (33.02%), Postives = 105/215 (48.84%), Query Frame = 2
Query:   68 PSKEMGRVIR--AQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            P+K + R+++  A R   G +   H H  +    +R +DF      +  VV  I +DP R A +  + +        +K   IA +G+  GQ V  G+ A ++VGN LP+ +IPEG  + N+E   G    LAR++G  A I+  + +     VKL SG  + I + CRA +G V   G  E  L+  G A       R   P VRG  MNPV+H
Sbjct:   30 PTKSLLRILKNSAGRNNQGKITVRH-HGGRVKRFYRLVDFKRNKDNIPAVVKTIEYDPNRSANICLLAYADG-----EKRYIIAPKGIKVGQKVVSGEGADIIVGNSLPLSNIPEGTFIHNIEMQPGGGAKLARSAGTSAQILGKDDNGKYVVVKLKSGETRRILARCRATVGMV---GNEEYSLVNVGKA--GINRHRGIRPTVRGSVMNPVDH 233          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_LISW6 (50S ribosomal protein L2 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21
Identity = 72/223 (32.29%), Postives = 113/223 (50.67%), Query Frame = 2
Query:   47 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA-YHKFRVKRNCWPKVRGVAMNPVEH 706
            A+  + +P K + R ++ ++ G  +  K    H  G    Q+R +DF      + G VA I +DP R A +A + +        +K   IAA+G+  GQ +Y G +A + +GN L ++ IP G VV N+E   G  G L R++G  A ++    +     ++L SG  ++I + CRA IGQV   G  +  L+  G A   ++  KR   P VRG  MNP +H
Sbjct:   22 AEITTSTPEKSLLRPLK-KKAGRNNQGKLTVRHHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAAKGLEVGQTIYSGAEADIKIGNALELKDIPVGTVVHNIEMKPGKGGQLVRSAGTSAQVL--GKEGKYVLIRLNSGEVRMILATCRATIGQV---GNEQHELINIGKAGRSRWMGKR---PTVRGSVMNPNDH 230          
The following BLAST results are available for this feature:
BLAST of FC930788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_BORBZ2.409e-2134.4750S ribosomal protein L2 OS=Borrelia burgdorferi (... [more]
RL2_BORBU2.409e-2134.4750S ribosomal protein L2 OS=Borrelia burgdorferi G... [more]
RL2_SERP53.146e-2131.7050S ribosomal protein L2 OS=Serratia proteamaculan... [more]
RL2_PELCD3.146e-2134.1350S ribosomal protein L2 OS=Pelobacter carbinolicu... [more]
RL2_PECCP4.109e-2134.6250S ribosomal protein L2 OS=Pectobacterium carotov... [more]
RL2_GEOLS4.109e-2132.0250S ribosomal protein L2 OS=Geobacter lovleyi (str... [more]
RL2_SYNAS5.366e-2134.6250S ribosomal protein L2 OS=Syntrophus aciditrophi... [more]
RL2_OCEIH5.366e-2134.5150S ribosomal protein L2 OS=Oceanobacillus iheyens... [more]
RL2_MYCS57.008e-2133.0250S ribosomal protein L2 OS=Mycoplasma synoviae (s... [more]
RL2_LISW67.008e-2132.2950S ribosomal protein L2 OS=Listeria welshimeri se... [more]

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Properties
Property NameValue
Genbank descriptionC34109A09EF PostHarvP1 Citrus clementina cDNA clone C34109A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930788 ID=FC930788; Name=FC930788; organism=Citrus clementina; type=EST; length=708bp
GCATCTTCCCAATCCACACATATATATATATATTCATCAGCCTGCCGCAC
AAGCTCAGTCTCTTTCGCCCTCTAAAGAAATGGGTCGTGTGATTCGCGCA
CAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGTAA
GGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTACC
TCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCCCG
CTGGCCCGAGTCACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAGGA
GCTTTTCATTGCCGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTGCG
GCAAGAAAGCCACTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTATC
CCTGAAGGAGCTGTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGCGG
TGTTTTGGCTAGAGCTTCTGGTGATTATGCCGTTATCATCAGTCATAACC
CCGATAATGACACCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGATT
ATTCCAAGTGGCTGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGGAG
GACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGAG
TGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGTG
GAGCATCC
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