FC930788

Overview
NameFC930788
Unique NameFC930788
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_LISMO (50S ribosomal protein L2 OS=Listeria monocytogenes GN=rplB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21
Identity = 72/223 (32.29%), Postives = 113/223 (50.67%), Query Frame = 2
Query:   47 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA-YHKFRVKRNCWPKVRGVAMNPVEH 706
            A+  + +P K + R ++ ++ G  +  K    H  G    Q+R +DF      + G VA I +DP R A +A + +        +K   IAA+G+  GQ +Y G +A + VGN L ++ IP G V+ N+E   G  G L R++G  A ++    +     ++L SG  ++I + CRA IGQV   G  +  L+  G A   ++  KR   P VRG  MNP +H
Sbjct:   22 AEITTSTPEKSLLRPLK-KKAGRNNQGKLTVRHHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAAKGLEVGQTIYSGAEADIKVGNALELKDIPVGTVIHNIEMKPGKGGQLVRSAGTSAQVL--GKEGKYVLIRLNSGEVRMILATCRATIGQV---GNEQHELINIGKAGRSRWMGKR---PTVRGSVMNPNDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_LISMF (50S ribosomal protein L2 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21
Identity = 72/223 (32.29%), Postives = 113/223 (50.67%), Query Frame = 2
Query:   47 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA-YHKFRVKRNCWPKVRGVAMNPVEH 706
            A+  + +P K + R ++ ++ G  +  K    H  G    Q+R +DF      + G VA I +DP R A +A + +        +K   IAA+G+  GQ +Y G +A + VGN L ++ IP G V+ N+E   G  G L R++G  A ++    +     ++L SG  ++I + CRA IGQV   G  +  L+  G A   ++  KR   P VRG  MNP +H
Sbjct:   22 AEITTSTPEKSLLRPLK-KKAGRNNQGKLTVRHHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAAKGLEVGQTIYSGAEADIKVGNALELKDIPVGTVIHNIEMKPGKGGQLVRSAGTSAQVL--GKEGKYVLIRLNSGEVRMILATCRATIGQV---GNEQHELINIGKAGRSRWMGKR---PTVRGSVMNPNDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_LISMC (50S ribosomal protein L2 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21
Identity = 72/223 (32.29%), Postives = 113/223 (50.67%), Query Frame = 2
Query:   47 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA-YHKFRVKRNCWPKVRGVAMNPVEH 706
            A+  + +P K + R ++ ++ G  +  K    H  G    Q+R +DF      + G VA I +DP R A +A + +        +K   IAA+G+  GQ +Y G +A + VGN L ++ IP G V+ N+E   G  G L R++G  A ++    +     ++L SG  ++I + CRA IGQV   G  +  L+  G A   ++  KR   P VRG  MNP +H
Sbjct:   22 AEITTSTPEKSLLRPLK-KKAGRNNQGKLTVRHHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAAKGLEVGQTIYSGAEADIKVGNALELKDIPVGTVIHNIEMKPGKGGQLVRSAGTSAQVL--GKEGKYVLIRLNSGEVRMILATCRATIGQV---GNEQHELINIGKAGRSRWMGKR---PTVRGSVMNPNDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_LISIN (50S ribosomal protein L2 OS=Listeria innocua GN=rplB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21
Identity = 72/223 (32.29%), Postives = 113/223 (50.67%), Query Frame = 2
Query:   47 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA-YHKFRVKRNCWPKVRGVAMNPVEH 706
            A+  + +P K + R ++ ++ G  +  K    H  G    Q+R +DF      + G VA I +DP R A +A + +        +K   IAA+G+  GQ +Y G +A + VGN L ++ IP G V+ N+E   G  G L R++G  A ++    +     ++L SG  ++I + CRA IGQV   G  +  L+  G A   ++  KR   P VRG  MNP +H
Sbjct:   22 AEITTSTPEKSLLRPLK-KKAGRNNQGKLTVRHHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAAKGLEVGQTIYSGAEADIKVGNALELKDIPVGTVIHNIEMKPGKGGQLVRSAGTSAQVL--GKEGKYVLIRLNSGEVRMILATCRATIGQV---GNEQHELINIGKAGRSRWMGKR---PTVRGSVMNPNDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_WOLWR (50S ribosomal protein L2 OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21
Identity = 71/196 (36.22%), Postives = 103/196 (52.55%), Query Frame = 2
Query:  137 THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706
            T HR G    ++R +DF +RN   +G+V +I +DP R   LA ++++        K   +A +GM  G  V  G  A ++ GN L ++ IP G+ V NVE   G+   +ARA+G YA I+    D     ++L SG  ++I S C+A IG V+      + L KAG         R+ W    P VRGVAMNPV+H
Sbjct:   51 TRHRGGGHKKKYRVIDF-KRNRSGQGIVEKIEYDPNRSGFLALISYKED----DIKSYILAPQGMKPGDVVTAGNDADILPGNCLLLKHIPVGSFVHNVELKPGNGAAIARAAGCYAQIVGR--DGQYVLLRLRSGQIRLILSSCKATIGVVSNPDHKNRKLGKAG---------RSRWLGIRPTVRGVAMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_TREPS (50S ribosomal protein L2 OS=Treponema pallidum subsp. pallidum (strain SS14) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21
Identity = 73/222 (32.88%), Postives = 108/222 (48.65%), Query Frame = 2
Query:   47 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            A+  + +P K + R  +  + G G+  +    HR G    ++R +DF      + G V  I +DP R   +A V + +      QK   +A +G+  GQ V  G+K  L   N LP+  IP G  V NVE  +G  G +AR++G  AVI +   D     ++LPSG  +++   C A IG++         L KAG A       R   P VRG+AMNPV+H
Sbjct:   22 AELTARTPEKSLTRG-KPAKAGRGAGGRISVRHRGGGHKRRYRDIDFKRDLHDIPGTVKTIEYDPNRSVNIALVFYANG-----QKRYILAPKGLKVGQQVVSGEKVPLEPANALPLGVIPVGFTVHNVELTIGKGGQIARSAGTRAVIAA--KDGGYVMLRLPSGEARLVHRRCYATIGELGNEDHMNTALGKAGRARW-----RGVRPTVRGMAMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_TREPA (50S ribosomal protein L2 OS=Treponema pallidum GN=rplB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21
Identity = 73/222 (32.88%), Postives = 108/222 (48.65%), Query Frame = 2
Query:   47 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            A+  + +P K + R  +  + G G+  +    HR G    ++R +DF      + G V  I +DP R   +A V + +      QK   +A +G+  GQ V  G+K  L   N LP+  IP G  V NVE  +G  G +AR++G  AVI +   D     ++LPSG  +++   C A IG++         L KAG A       R   P VRG+AMNPV+H
Sbjct:   22 AELTARTPEKSLTRG-KPAKAGRGAGGRISVRHRGGGHKRRYRDIDFKRDLHDIPGTVKTIEYDPNRSVNIALVFYANG-----QKRYILAPKGLKVGQQVVSGEKVPLEPANALPLGVIPVGFTVHNVELTIGKGGQIARSAGTRAVIAA--KDGGYVMLRLPSGEARLVHRRCYATIGELGNEDHMNTALGKAGRARW-----RGVRPTVRGMAMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_THETN (50S ribosomal protein L2 OS=Thermoanaerobacter tengcongensis GN=rplB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21
Identity = 68/194 (35.05%), Postives = 99/194 (51.03%), Query Frame = 2
Query:  143 HRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706
            HR G    ++R +DF      + G VA I +DP R A +A + +        +K   IA  G+  G  V  G+   + VGN LP+R+IP G +V N+E   G  G L RA+G  A +++   + D   +++PSG  ++I + CRA IGQV+        + KAG         R+ W    P VRG AMNPV+H
Sbjct:   53 HRGGGHKRRYRIIDFKRDKDGIPGKVAAIEYDPNRTAFIALIHYADG-----EKRYIIAPHGLKVGDIVESGENVDIKVGNALPLRNIPVGTIVHNIELIPGKGGQLVRAAGAAAQLMA--KEGDYVHIRMPSGEIRLINANCRATIGQVSNIDHENVKIGKAG---------RSRWLGIRPTVRGSAMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_WOLTR (50S ribosomal protein L2 OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.195e-20
Identity = 73/209 (34.93%), Postives = 108/209 (51.67%), Query Frame = 2
Query:   92 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706
            I  + KG G        H+K   ++R +DF +RN   +GVV +I +DP R   LA V+++        K   +A +G+  G  V  G    ++ GN LP++ IP G+ V  VE   G   V+ARA+G YA ++    D +   ++L SG  +++ S C+A IG V+   R  + L KAG         R+ W    P VRGVAMNPV+H
Sbjct:   49 ITIRHKGGG--------HKK---KYRIIDF-KRNRNDQGVVEKIEYDPNRSGFLALVSYKCD----DTKSYILAPQGIKPGDIVMSGSGIDILPGNCLPLKGIPIGSFVHGVELKPGSGAVIARAAGCYAQVVGR--DGNYVLLRLRSGQVRLVLSSCKATIGVVSNPDRKNRKLGKAG---------RSRWLGVRPTVRGVAMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_WOLPP (50S ribosomal protein L2 OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.195e-20
Identity = 71/196 (36.22%), Postives = 103/196 (52.55%), Query Frame = 2
Query:  137 THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706
            T HR G    ++R +DF +RN   +G+V +I +DP R   LA ++++        K   +A +GM  G  V  G  A ++ GN L ++ IP G+ V NVE   G+   +ARA+G YA I+    D     ++L SG  ++I S C+A IG V+      + L KAG         R+ W    P VRGVAMNPV+H
Sbjct:   51 TRHRGGGHKKKYRVIDF-KRNRSDQGIVEKIEYDPNRSGFLALISYKED----DTKSYILAPQGMKPGDVVTAGDDADILPGNCLLLKHIPVGSFVHNVELKPGNGAAIARAAGCYAQIVGR--DGQYVLLRLRSGQIRLILSSCKATIGVVSNLDHKNRKLGKAG---------RSRWLGIRPAVRGVAMNPVDH 230          
The following BLAST results are available for this feature:
BLAST of FC930788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_LISMO7.008e-2132.2950S ribosomal protein L2 OS=Listeria monocytogenes... [more]
RL2_LISMF7.008e-2132.2950S ribosomal protein L2 OS=Listeria monocytogenes... [more]
RL2_LISMC7.008e-2132.2950S ribosomal protein L2 OS=Listeria monocytogenes... [more]
RL2_LISIN7.008e-2132.2950S ribosomal protein L2 OS=Listeria innocua GN=rp... [more]
RL2_WOLWR9.153e-2136.2250S ribosomal protein L2 OS=Wolbachia sp. subsp. D... [more]
RL2_TREPS9.153e-2132.8850S ribosomal protein L2 OS=Treponema pallidum sub... [more]
RL2_TREPA9.153e-2132.8850S ribosomal protein L2 OS=Treponema pallidum GN=... [more]
RL2_THETN9.153e-2135.0550S ribosomal protein L2 OS=Thermoanaerobacter ten... [more]
RL2_WOLTR1.195e-2034.9350S ribosomal protein L2 OS=Wolbachia sp. subsp. B... [more]
RL2_WOLPP1.195e-2036.2250S ribosomal protein L2 OS=Wolbachia pipientis su... [more]

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Properties
Property NameValue
Genbank descriptionC34109A09EF PostHarvP1 Citrus clementina cDNA clone C34109A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930788 ID=FC930788; Name=FC930788; organism=Citrus clementina; type=EST; length=708bp
GCATCTTCCCAATCCACACATATATATATATATTCATCAGCCTGCCGCAC
AAGCTCAGTCTCTTTCGCCCTCTAAAGAAATGGGTCGTGTGATTCGCGCA
CAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGTAA
GGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTACC
TCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCCCG
CTGGCCCGAGTCACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAGGA
GCTTTTCATTGCCGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTGCG
GCAAGAAAGCCACTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTATC
CCTGAAGGAGCTGTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGCGG
TGTTTTGGCTAGAGCTTCTGGTGATTATGCCGTTATCATCAGTCATAACC
CCGATAATGACACCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGATT
ATTCCAAGTGGCTGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGGAG
GACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGAG
TGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGTG
GAGCATCC
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