FC930788
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_LISMO (50S ribosomal protein L2 OS=Listeria monocytogenes GN=rplB PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21 Identity = 72/223 (32.29%), Postives = 113/223 (50.67%), Query Frame = 2 Query: 47 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA-YHKFRVKRNCWPKVRGVAMNPVEH 706 A+ + +P K + R ++ ++ G + K H G Q+R +DF + G VA I +DP R A +A + + +K IAA+G+ GQ +Y G +A + VGN L ++ IP G V+ N+E G G L R++G A ++ + ++L SG ++I + CRA IGQV G + L+ G A ++ KR P VRG MNP +H Sbjct: 22 AEITTSTPEKSLLRPLK-KKAGRNNQGKLTVRHHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAAKGLEVGQTIYSGAEADIKVGNALELKDIPVGTVIHNIEMKPGKGGQLVRSAGTSAQVL--GKEGKYVLIRLNSGEVRMILATCRATIGQV---GNEQHELINIGKAGRSRWMGKR---PTVRGSVMNPNDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_LISMF (50S ribosomal protein L2 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rplB PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21 Identity = 72/223 (32.29%), Postives = 113/223 (50.67%), Query Frame = 2 Query: 47 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA-YHKFRVKRNCWPKVRGVAMNPVEH 706 A+ + +P K + R ++ ++ G + K H G Q+R +DF + G VA I +DP R A +A + + +K IAA+G+ GQ +Y G +A + VGN L ++ IP G V+ N+E G G L R++G A ++ + ++L SG ++I + CRA IGQV G + L+ G A ++ KR P VRG MNP +H Sbjct: 22 AEITTSTPEKSLLRPLK-KKAGRNNQGKLTVRHHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAAKGLEVGQTIYSGAEADIKVGNALELKDIPVGTVIHNIEMKPGKGGQLVRSAGTSAQVL--GKEGKYVLIRLNSGEVRMILATCRATIGQV---GNEQHELINIGKAGRSRWMGKR---PTVRGSVMNPNDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_LISMC (50S ribosomal protein L2 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rplB PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21 Identity = 72/223 (32.29%), Postives = 113/223 (50.67%), Query Frame = 2 Query: 47 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA-YHKFRVKRNCWPKVRGVAMNPVEH 706 A+ + +P K + R ++ ++ G + K H G Q+R +DF + G VA I +DP R A +A + + +K IAA+G+ GQ +Y G +A + VGN L ++ IP G V+ N+E G G L R++G A ++ + ++L SG ++I + CRA IGQV G + L+ G A ++ KR P VRG MNP +H Sbjct: 22 AEITTSTPEKSLLRPLK-KKAGRNNQGKLTVRHHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAAKGLEVGQTIYSGAEADIKVGNALELKDIPVGTVIHNIEMKPGKGGQLVRSAGTSAQVL--GKEGKYVLIRLNSGEVRMILATCRATIGQV---GNEQHELINIGKAGRSRWMGKR---PTVRGSVMNPNDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_LISIN (50S ribosomal protein L2 OS=Listeria innocua GN=rplB PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21 Identity = 72/223 (32.29%), Postives = 113/223 (50.67%), Query Frame = 2 Query: 47 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA-YHKFRVKRNCWPKVRGVAMNPVEH 706 A+ + +P K + R ++ ++ G + K H G Q+R +DF + G VA I +DP R A +A + + +K IAA+G+ GQ +Y G +A + VGN L ++ IP G V+ N+E G G L R++G A ++ + ++L SG ++I + CRA IGQV G + L+ G A ++ KR P VRG MNP +H Sbjct: 22 AEITTSTPEKSLLRPLK-KKAGRNNQGKLTVRHHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAAKGLEVGQTIYSGAEADIKVGNALELKDIPVGTVIHNIEMKPGKGGQLVRSAGTSAQVL--GKEGKYVLIRLNSGEVRMILATCRATIGQV---GNEQHELINIGKAGRSRWMGKR---PTVRGSVMNPNDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_WOLWR (50S ribosomal protein L2 OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=rplB PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21 Identity = 71/196 (36.22%), Postives = 103/196 (52.55%), Query Frame = 2 Query: 137 THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706 T HR G ++R +DF +RN +G+V +I +DP R LA ++++ K +A +GM G V G A ++ GN L ++ IP G+ V NVE G+ +ARA+G YA I+ D ++L SG ++I S C+A IG V+ + L KAG R+ W P VRGVAMNPV+H Sbjct: 51 TRHRGGGHKKKYRVIDF-KRNRSGQGIVEKIEYDPNRSGFLALISYKED----DIKSYILAPQGMKPGDVVTAGNDADILPGNCLLLKHIPVGSFVHNVELKPGNGAAIARAAGCYAQIVGR--DGQYVLLRLRSGQIRLILSSCKATIGVVSNPDHKNRKLGKAG---------RSRWLGIRPTVRGVAMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_TREPS (50S ribosomal protein L2 OS=Treponema pallidum subsp. pallidum (strain SS14) GN=rplB PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21 Identity = 73/222 (32.88%), Postives = 108/222 (48.65%), Query Frame = 2 Query: 47 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 A+ + +P K + R + + G G+ + HR G ++R +DF + G V I +DP R +A V + + QK +A +G+ GQ V G+K L N LP+ IP G V NVE +G G +AR++G AVI + D ++LPSG +++ C A IG++ L KAG A R P VRG+AMNPV+H Sbjct: 22 AELTARTPEKSLTRG-KPAKAGRGAGGRISVRHRGGGHKRRYRDIDFKRDLHDIPGTVKTIEYDPNRSVNIALVFYANG-----QKRYILAPKGLKVGQQVVSGEKVPLEPANALPLGVIPVGFTVHNVELTIGKGGQIARSAGTRAVIAA--KDGGYVMLRLPSGEARLVHRRCYATIGELGNEDHMNTALGKAGRARW-----RGVRPTVRGMAMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_TREPA (50S ribosomal protein L2 OS=Treponema pallidum GN=rplB PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21 Identity = 73/222 (32.88%), Postives = 108/222 (48.65%), Query Frame = 2 Query: 47 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 A+ + +P K + R + + G G+ + HR G ++R +DF + G V I +DP R +A V + + QK +A +G+ GQ V G+K L N LP+ IP G V NVE +G G +AR++G AVI + D ++LPSG +++ C A IG++ L KAG A R P VRG+AMNPV+H Sbjct: 22 AELTARTPEKSLTRG-KPAKAGRGAGGRISVRHRGGGHKRRYRDIDFKRDLHDIPGTVKTIEYDPNRSVNIALVFYANG-----QKRYILAPKGLKVGQQVVSGEKVPLEPANALPLGVIPVGFTVHNVELTIGKGGQIARSAGTRAVIAA--KDGGYVMLRLPSGEARLVHRRCYATIGELGNEDHMNTALGKAGRARW-----RGVRPTVRGMAMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_THETN (50S ribosomal protein L2 OS=Thermoanaerobacter tengcongensis GN=rplB PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21 Identity = 68/194 (35.05%), Postives = 99/194 (51.03%), Query Frame = 2 Query: 143 HRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706 HR G ++R +DF + G VA I +DP R A +A + + +K IA G+ G V G+ + VGN LP+R+IP G +V N+E G G L RA+G A +++ + D +++PSG ++I + CRA IGQV+ + KAG R+ W P VRG AMNPV+H Sbjct: 53 HRGGGHKRRYRIIDFKRDKDGIPGKVAAIEYDPNRTAFIALIHYADG-----EKRYIIAPHGLKVGDIVESGENVDIKVGNALPLRNIPVGTIVHNIELIPGKGGQLVRAAGAAAQLMA--KEGDYVHIRMPSGEIRLINANCRATIGQVSNIDHENVKIGKAG---------RSRWLGIRPTVRGSAMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_WOLTR (50S ribosomal protein L2 OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=rplB PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.195e-20 Identity = 73/209 (34.93%), Postives = 108/209 (51.67%), Query Frame = 2 Query: 92 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706 I + KG G H+K ++R +DF +RN +GVV +I +DP R LA V+++ K +A +G+ G V G ++ GN LP++ IP G+ V VE G V+ARA+G YA ++ D + ++L SG +++ S C+A IG V+ R + L KAG R+ W P VRGVAMNPV+H Sbjct: 49 ITIRHKGGG--------HKK---KYRIIDF-KRNRNDQGVVEKIEYDPNRSGFLALVSYKCD----DTKSYILAPQGIKPGDIVMSGSGIDILPGNCLPLKGIPIGSFVHGVELKPGSGAVIARAAGCYAQVVGR--DGNYVLLRLRSGQVRLVLSSCKATIGVVSNPDRKNRKLGKAG---------RSRWLGVRPTVRGVAMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_WOLPP (50S ribosomal protein L2 OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=rplB PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.195e-20 Identity = 71/196 (36.22%), Postives = 103/196 (52.55%), Query Frame = 2 Query: 137 THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706 T HR G ++R +DF +RN +G+V +I +DP R LA ++++ K +A +GM G V G A ++ GN L ++ IP G+ V NVE G+ +ARA+G YA I+ D ++L SG ++I S C+A IG V+ + L KAG R+ W P VRGVAMNPV+H Sbjct: 51 TRHRGGGHKKKYRVIDF-KRNRSDQGIVEKIEYDPNRSGFLALISYKED----DTKSYILAPQGMKPGDVVTAGDDADILPGNCLLLKHIPVGSFVHNVELKPGNGAAIARAAGCYAQIVGR--DGQYVLLRLRSGQIRLILSSCKATIGVVSNLDHKNRKLGKAG---------RSRWLGIRPAVRGVAMNPVDH 230 The following BLAST results are available for this feature:
BLAST of FC930788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930788 ID=FC930788; Name=FC930788; organism=Citrus clementina; type=EST; length=708bpback to top |