FC930788

Overview
NameFC930788
Unique NameFC930788
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_WOLPM (50S ribosomal protein L2 OS=Wolbachia pipientis wMel GN=rplB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.195e-20
Identity = 70/196 (35.71%), Postives = 103/196 (52.55%), Query Frame = 2
Query:  137 THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706
            T HR G    ++R +DF +RN   +G+V +I +DP R   LA ++++        K   +A +GM  G  V  G  A ++ GN L ++ IP G+ V NVE   G+   +ARA+G YA I+    D     ++L SG  ++I S C+A IG V+      + L KAG         R+ W    P VRG+AMNPV+H
Sbjct:   51 TRHRGGGHKKKYRVIDF-KRNRSGQGIVEKIEYDPNRSGFLALISYKED----DIKSYILAPQGMKPGDVVTAGNDADILPGNCLLLKHIPVGSFVHNVELKPGNGAAIARAAGCYAQIVGR--DGQYVLLRLRSGQIRLILSSCKATIGVVSNPDHKNRKLGKAG---------RSRWLGIRPTVRGIAMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_PROMH (50S ribosomal protein L2 OS=Proteus mirabilis (strain HI4320) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.195e-20
Identity = 64/181 (35.36%), Postives = 91/181 (50.28%), Query Frame = 2
Query:  164 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            +R +DF      +   V  + +DP R A +A V +        ++   +A +G+  G  V  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + IPS CRA IG+V       + L KAG +       R   P VRG AMNPV+H
Sbjct:   62 YRIVDFKRNKDGIPATVERLEYDPNRSANIALVLYADG-----ERRYILAPKGLKAGDKVQSGVDAAIKTGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGAYVTIRLRSGEMRKIPSDCRATIGEVGNSEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_BUCBP (50S ribosomal protein L2 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rplB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.195e-20
Identity = 69/220 (31.36%), Postives = 108/220 (49.09%), Query Frame = 2
Query:   59 SLSPSKEMGRVIRAQRKGAG--SVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            SL   K +  +IR   K  G  +  +  T H  G  +  +R +DF      +  +V  + +DP R + +A + +    R        +A++G+  G  +  G  A + +GN LP+++IP G V+ NVE   G  G +AR++G Y  +IS   +N    ++L SG  + + S CRA IG+V       + L KAG +       R   P VRG AMNPV+H
Sbjct:   23 SLYKGKPISSLIRKNSKSGGRNNCGRITTRHIGGRHKRFYRIIDFKRNKDNIPAIVERLEYDPNRSSNIALILYSDGDR-----RYILASKGLMVGSKIVSGFNAEIKIGNALPMKNIPIGTVIHNVEIKPGKGGQIARSAGTYVQLISR--ENSYVTIRLRSGETRKLESKCRATIGEVGNSESMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_BORAP (50S ribosomal protein L2 OS=Borrelia afzelii (strain PKo) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.195e-20
Identity = 70/206 (33.98%), Postives = 109/206 (52.91%), Query Frame = 2
Query:   92 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            I  +R+G G       H RK    +R +DF  R+ + +   VA I +DP R A +A + ++       +K   I+ + +  G  +  G  A + +GN LP+ +IP G  V N+E +VG  G L R++G YA+I++   D +   VKL SG  ++I   C A IG++         + KAG +  ++  +R   PKVRGVAMNPV+H
Sbjct:   50 ISIRRRGGG-------HKRK----YRLIDFNRRDKFSIPARVASIEYDPNRSANIALLVYKDG-----EKRYIISPKDIKVGDVLESGPNAPIKIGNALPLENIPIGRTVHNIELNVGKGGQLVRSAGGYAMILA--SDGNYVTVKLSSGEVRLIFKKCIATIGEIGNEDYVNVSIGKAGKS--RWLGRR---PKVRGVAMNPVDH 232          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_TREDE (50S ribosomal protein L2 OS=Treponema denticola GN=rplB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 75/225 (33.33%), Postives = 114/225 (50.67%), Query Frame = 2
Query:   53 AQSLSPSKEMGRVIRAQRKGAG--SVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706
            AQ    S   G+  RA R   G  SV      H++   ++R +DF +RN Y + G V  I +DP R A +A + +        +K   IA +G+  GQ +  G+ ATL V N LP+ +IP G  V N+E  +G  G +AR++G  A++ +   + +   ++LPSG  +++   C A IG+V         L KAG         R+ W    P VRG+AMNP++H
Sbjct:   26 AQKPEKSLTTGKKNRAGRDSRGRISVRGQGGGHKQ---KYRQIDF-KRNKYGIPGTVRTIEYDPNRSANIALIFYADG-----EKRYIIAPKGLKIGQKIMSGEMATLDVANALPLEAIPVGFTVHNIELTIGRGGQMARSAGAGALVAA--KEGEYVTIRLPSGETRLVNKKCYATIGEVGNEDHMNTSLGKAG---------RSRWLGIRPTVRGMAMNPIDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_GEOSF (50S ribosomal protein L2 OS=Geobacter sp. (strain FRC-32) GN=rplB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 71/228 (31.14%), Postives = 114/228 (50.00%), Query Frame = 2
Query:   35 HQPAAQAQSLSPSK-EMGRVIRAQRKGAGSVFKSHTHHRKGPA---QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            HQ  +  + ++ S+ E   V++ ++ G  + F   T    G     ++R +DF      +   VA + +DP R A +A + +        +K   IA   +  G  V     A +  GN LP+RSIP G ++ N+E  +G    LAR++G +A +++   +    +VKLPSG  +++   C A IGQV         + KAG +  ++  KR   PKVRGVAMNPV+H
Sbjct:   15 HQTCSTFEEITTSQPERSLVVKLKKTGGRNNFGRITSRHIGGGHKQKYRIIDFRRDKRDIPAKVASVEYDPYRSARIALLNYADG-----EKRYIIAPLDLKVGDTVVASTSADIKPGNALPIRSIPLGTIIHNIELKIGKGAQLARSAGTFAQLMA--KEEKYAQVKLPSGEVRMVLMDCMATIGQVGNLDHENVSIGKAGRS--RWLGKR---PKVRGVAMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RK2_POPTR (50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 65/206 (31.55%), Postives = 98/206 (47.57%), Query Frame = 2
Query:  107 KGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706
            KG  S       HR G  +  +R +DF     Y+ G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+H
Sbjct:   39 KGRNSRGIITARHRGGGHKRLYRKIDFRRNEKYIYGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIISGTEVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDH 228          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RK2B_POPAL (50S ribosomal protein L2-B, chloroplastic OS=Populus alba GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 64/210 (30.48%), Postives = 101/210 (48.10%), Query Frame = 2
Query:   89 VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706
            +I A+ +G G        H++    +R +DF     Y+ G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+H
Sbjct:   46 IITARHRGGG--------HKR---LYRKIDFRRNEKYIYGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIISGTEVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDH 228          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_ERWCT (50S ribosomal protein L2 OS=Erwinia carotovora subsp. atroseptica GN=rplB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.039e-20
Identity = 62/181 (34.25%), Postives = 92/181 (50.83%), Query Frame = 2
Query:  164 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            +R +DF      +  VV  + +DP R A +A V ++       ++   +A +G+  G  +  G  A +  GN LP+R+IP G+ V NVE   G  G LAR++G Y  I++   D     ++L SG  + + S CRA +G+V       + L KAG A       R   P VRG AMNPV+H
Sbjct:   62 YRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR--DGSYVTLRLRSGEMRKVESDCRATLGEVGNAEHMLRVLGKAGAARW-----RGIRPTVRGTAMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_CLOCE (50S ribosomal protein L2 OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=rplB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.039e-20
Identity = 63/190 (33.16%), Postives = 101/190 (53.16%), Query Frame = 2
Query:  140 HHRKGPAQ-FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            HH  G  Q +R +DF      +K  VA I +DP R A +A + +        +K   +A  G+  G FV  G+ + +  GN LP+ +IP G+++ N+E   G  G + RA+G+ A +++   + +  +++LPSG  +++   CRA +GQ+   G  E   +K G A  K  +     P VRGV MNPV+H
Sbjct:   53 HHGGGNRQKYRVIDFKRDKDGIKAKVATIEYDPNRTANIALLNYADG-----EKRYILAPVGLKVGDFVESGESSDIRTGNALPLANIPVGSMIHNIELKPGKGGQMVRAAGNAAQLMA--KEGEYAQIRLPSGEVRMVRINCRATLGQI---GNIEHENVKIGKAGRKRWM--GVRPTVRGVVMNPVDH 230          
The following BLAST results are available for this feature:
BLAST of FC930788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_WOLPM1.195e-2035.7150S ribosomal protein L2 OS=Wolbachia pipientis wM... [more]
RL2_PROMH1.195e-2035.3650S ribosomal protein L2 OS=Proteus mirabilis (str... [more]
RL2_BUCBP1.195e-2031.3650S ribosomal protein L2 OS=Buchnera aphidicola su... [more]
RL2_BORAP1.195e-2033.9850S ribosomal protein L2 OS=Borrelia afzelii (stra... [more]
RL2_TREDE1.561e-2033.3350S ribosomal protein L2 OS=Treponema denticola GN... [more]
RL2_GEOSF1.561e-2031.1450S ribosomal protein L2 OS=Geobacter sp. (strain ... [more]
RK2_POPTR1.561e-2031.5550S ribosomal protein L2, chloroplastic OS=Populus... [more]
RK2B_POPAL1.561e-2030.4850S ribosomal protein L2-B, chloroplastic OS=Popul... [more]
RL2_ERWCT2.039e-2034.2550S ribosomal protein L2 OS=Erwinia carotovora sub... [more]
RL2_CLOCE2.039e-2033.1650S ribosomal protein L2 OS=Clostridium cellulolyt... [more]

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Properties
Property NameValue
Genbank descriptionC34109A09EF PostHarvP1 Citrus clementina cDNA clone C34109A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930788 ID=FC930788; Name=FC930788; organism=Citrus clementina; type=EST; length=708bp
GCATCTTCCCAATCCACACATATATATATATATTCATCAGCCTGCCGCAC
AAGCTCAGTCTCTTTCGCCCTCTAAAGAAATGGGTCGTGTGATTCGCGCA
CAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGTAA
GGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTACC
TCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCCCG
CTGGCCCGAGTCACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAGGA
GCTTTTCATTGCCGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTGCG
GCAAGAAAGCCACTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTATC
CCTGAAGGAGCTGTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGCGG
TGTTTTGGCTAGAGCTTCTGGTGATTATGCCGTTATCATCAGTCATAACC
CCGATAATGACACCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGATT
ATTCCAAGTGGCTGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGGAG
GACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGAG
TGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGTG
GAGCATCC
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