FC930788
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_CHLT3 (50S ribosomal protein L2 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=rplB PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.039e-20 Identity = 61/185 (32.97%), Postives = 97/185 (52.43%), Query Frame = 2 Query: 164 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706 +R +DF + VA I +DP R A +A +++ +K +A G+ G + CG +A + VGN LP+++IP G V N+E G G +AR++G YAV+++ + D +K+PSG + + C+A +G + G E L G A R+ W P+ RG+AMNPV+H Sbjct: 62 YRIIDFKRNKDGIPAKVATIEYDPNRTARIALLSYADG-----EKRYILAPNGIKVGDLIECGPEADIKVGNALPLKNIPVGIEVHNIEMRPGKGGQMARSAGSYAVLVA--KEGDYATLKMPSGELRKVRVECKATVGVI---GNLEHENLSLGKA------GRSRWLGIRPQTRGMAMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_SHEAM (50S ribosomal protein L2 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rplB PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.663e-20 Identity = 66/206 (32.04%), Postives = 103/206 (50.00%), Query Frame = 2 Query: 95 RAQRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 +++ G + + T H G +R +DF + G + + +DP R A +A V + ++ +AA+GM G V G A + VGN LP+R+IP G+VV VE G +AR++G Y +++ D + ++L SG + +P CRA +G+V + L KAG + R P VRGVAMNPV+H Sbjct: 37 KSKTGGRNNTGRITTRHVGGGHKQHYRLIDFKRNKDGIPGKIERLEYDPNRTANIALVLYADG-----ERRYILAAKGMQAGDKVVSGIDADIKVGNALPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGEYATLRLRSGEMRKVPVDCRATLGEVGNAEHMLRQLGKAG-----AKRWRGVRPTVRGVAMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_PELPD (50S ribosomal protein L2 OS=Pelobacter propionicus (strain DSM 2379) GN=rplB PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20 Identity = 72/228 (31.58%), Postives = 117/228 (51.32%), Query Frame = 2 Query: 35 HQPAAQAQSLSPSK-EMGRVIRAQRKGAGSVFKSHTHHRKGPA---QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 HQ + + ++ S E +I+ ++ G + T +G ++R +DF + VA I +DP R A +A + + +K +A + G V G +A + GN LP+++IP G ++ NVE +G LAR++G +A +++ + ++VKLPSG +++ C A IGQV + L KAG A ++ KR PKVRGVAMNPV+H Sbjct: 15 HQTCSSFEEITTSTPEKSLLIKLKKSGGRNALGRVTSRHQGGGHKQKYRIIDFRRDKISIPAKVASIEYDPYRSARIALLHYVDG-----EKRYILAPLDLKVGDTVLSGPEADIKPGNALPLKAIPLGTIIHNVELKLGKGAQLARSAGTFAQLMA--KEGRYSQVKLPSGEVRMVLQDCYATIGQVGNVDHEKVSLGKAGRA--RWLGKR---PKVRGVAMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RK2_PINKO (50S ribosomal protein L2, chloroplastic OS=Pinus koraiensis GN=rpl2 PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20 Identity = 67/206 (32.52%), Postives = 106/206 (51.46%), Query Frame = 2 Query: 89 VIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 +I A+ +G G H++ +R +DF ++ G + I +DP R A + +V +++ K + G+ G + G KA + +GNVLP+ ++P G + N+E +G G LARA+G A +I+ + T R LPSG ++I C A IGQV + KAG ++ KR+ +VRGVAMNPV+H Sbjct: 49 IITARHRGGG--------HKR---LYRQIDFRRDKEHISGEIVTIEYDPNRSAYICKVHYKNG-----DKMYILHPRGVMIGDTILSGPKAPISIGNVLPLTNMPLGTAIHNIEITLGKGGQLARAAGAVAELIAKEDRSATLR--LPSGEVRLISENCSATIGQVGNITANNRSFGKAG--AKRWLGKRS---EVRGVAMNPVDH 231
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RK2_PICAB (50S ribosomal protein L2, chloroplastic OS=Picea abies GN=rpl2 PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20 Identity = 71/219 (32.42%), Postives = 110/219 (50.23%), Query Frame = 2 Query: 62 LSPSKEM--GRVIRAQRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 L P K++ G+ R G G + HR G + +R +DF ++ G + I +DP R A + +V +++ K + G+ G + G KA + +GN LP+ ++P G + N+E +G G LARA+G A +I+ + T R LPSG ++I C A IGQV + KAG ++ KR+ +VRGVAMNPV+H Sbjct: 27 LDPQKKLTSGQHHCGSRNGRGIIT---ARHRGGGHKRLYRQIDFRRDKEHISGKIVTIEYDPNRSAYICKVHYKNG-----DKMYILHPRGVMIGDTILSGPKAPISIGNALPLTNMPLGTAIHNIEITLGKGGQLARAAGAVAELIAKEDRSATLR--LPSGEVRLISENCSATIGQVGNITANNRSFGKAG--AKRWLGKRS---EVRGVAMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_SODGM (50S ribosomal protein L2 OS=Sodalis glossinidius (strain morsitans) GN=rplB PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20 Identity = 62/181 (34.25%), Postives = 93/181 (51.38%), Query Frame = 2 Query: 164 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 +R +DF + VV + +DP R A +A V ++ ++ +A +G+ G+ + G A + GN LP+R+IP G+ V NVE G G LAR++G Y I++ D ++L SG + I S CRA +G+V + L KAG + R P VRG AMNPV+H Sbjct: 62 YRLIDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGEQIQSGVDAAIKAGNALPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGAYVTLRLRSGEMRKIQSECRATLGEVGNAEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_PHOLL (50S ribosomal protein L2 OS=Photorhabdus luminescens subsp. laumondii GN=rplB PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20 Identity = 69/225 (30.67%), Postives = 105/225 (46.67%), Query Frame = 2 Query: 32 IHQPAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 +H+ A L S + G R + H H +R +DF + VV + +DP R A +A V ++ ++ +A +G+ G + G A++ GN LP+R+IP G+ V NVE G G LAR++G Y I++ D ++L SG + + S CRA +G+V + L KAG + R P VRG AMNPV+H Sbjct: 24 LHKGKPYAPLLEKSSKTGGRNNNGRITTRHIGGGHKQH------YRLIDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDG-----ERRYILAPKGLKAGDQIQSGVDASIKTGNALPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVAR--DGSYVTLRLRSGEMRKVLSDCRATLGEVGNAEHMLRVLGKAGASRW-----RGIRPTVRGTAMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_GEOUR (50S ribosomal protein L2 OS=Geobacter uraniireducens (strain Rf4) GN=rplB PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20 Identity = 69/228 (30.26%), Postives = 115/228 (50.44%), Query Frame = 2 Query: 35 HQPAAQAQSLSPSK-EMGRVIRAQRKGAGSVFKSHTHHRKGPA---QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 HQ + + ++ K E +++ ++ G + F T G ++R +DF + V+ + +DP R A +A + + +K IA + G V G A + GN LP+RSIP G ++ N+E +G LAR++G +A +++ ++ +VKLPSG +++ C A +GQV + KAG + ++ KR PKVRGVAMNPV+H Sbjct: 15 HQTCSTFEEITTDKPEKSLLVKLKKTGGRNNFGRVTSRHIGGGHKQKYRIIDFRRDKRDIPAKVSSVEYDPYRSARIALLNYADG-----EKRYIIAPLDLKVGDTVISGPSADIKPGNALPIRSIPLGTIIHNIELKIGKGAQLARSAGTFAQLMA--KEDKYAQVKLPSGEVRMVLLDCIATVGQVGNIDHENVSIGKAGRS--RWLGKR---PKVRGVAMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_CLOPH (50S ribosomal protein L2 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rplB PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20 Identity = 71/236 (30.08%), Postives = 112/236 (47.46%), Query Frame = 2 Query: 11 NPHIYIYIHQPAAQAQSLSPSKEMGRVIRAQRKGAG--SVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 NP+ H + ++ S ++ + +K AG + K H+ G ++ +R +DF + + VV I +DP R A +A + + +K +A G+ GQ V G A + VGN LP+ +IP G+ + N+E + G G L R++G+ A +++ T R LPSG +++P CRA +GQV L KAG H P VRG MNP +H Sbjct: 7 NPYTPSRRHMTGSDFAEITTSTPEKSLVVSLKKNAGRNNQGKITVRHQGGGSRRKYRIIDFKRKKDGISAVVKTIEYDPNRTANIALICYADG-----EKAYILAPNGLQVGQTVMNGATAEIKVGNCLPLANIPVGSQIHNIELYPGKGGQLVRSAGNSAQLMAREGKYATLR--LPSGEMRMVPISCRATLGQVGNIDHELVTLGKAGRVRH-----MGIRPTVRGSVMNPNDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RK2_PELHO (50S ribosomal protein L2, chloroplastic OS=Pelargonium hortorum GN=rpl2-A PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.543e-20 Identity = 65/190 (34.21%), Postives = 97/190 (51.05%), Query Frame = 2 Query: 143 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 HR G + +R +DF + G + I +DP R A + + + +K + G G + G + + +GN LP+ +IP G + N+E +G G LARA+G A +IS + + VKLPSG ++I C A +GQV G K L +AG+ ++ KR P VRGVAMNPV+H Sbjct: 51 HRGGGHKRLYRQIDFRRNENNIYGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGARIGDTIVSGTEVPIKMGNALPLTNIPLGTAIHNIEITLGKGGQLARAAGAVAKLIS--KEGKSAAVKLPSGEVRLISQNCSATVGQVGNVGVNRKSLGRAGS--KRWLGKR---PVVRGVAMNPVDH 228 The following BLAST results are available for this feature:
BLAST of FC930788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930788 ID=FC930788; Name=FC930788; organism=Citrus clementina; type=EST; length=708bpback to top |