FC930788

Overview
NameFC930788
Unique NameFC930788
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_AERPE (50S ribosomal protein L2P OS=Aeropyrum pernix GN=rpl2p PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.475e-42
Identity = 98/210 (46.67%), Postives = 125/210 (59.52%), Query Frame = 2
Query:   80 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            MG+ +R QR G G+  ++S  H   GPA++  L        L+G V E+IHDPGR  PLARV       +     L  AAEGMY GQ +  G  A    GN+LP+  IPEG  V NVE   GD G LAR +G YA+++        T ++LPSG  K +P+  RA IG  AG GR EKP++KAG AYHK++VK   WP+VRGVAMN V+H
Sbjct:    1 MGKRLRQQRAGRGTPTYRSRAHIHPGPAKYPPLS----GDTLRGKVVELIHDPGRYVPLARVVREDGVEF-----LMPAAEGMYVGQIIEIGPAAKPEAGNILPLGKIPEGTEVFNVELRPGDGGKLARQAGSYALVVGRA--GAKTILRLPSGKDKEVPNDSRATIGIPAGAGRIEKPIMKAGFAYHKWKVKARKWPRVRGVAMNAVDH 199          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_HALMA (50S ribosomal protein L2P OS=Haloarcula marismortui GN=rpl2p PE=1 SV=4)

HSP 1 Score: 170.244 bits (430), Expect = 9.407e-42
Identity = 96/210 (45.71%), Postives = 124/210 (59.05%), Query Frame = 2
Query:   80 MGRVIRAQRKGAG-SVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            MGR I+ QR+G G S F++ +H  K   + R ++ G+    + G V +I HDP R AP+A V F    R      L +A EG+  G  +  G  A +  GN LP+  IPEG  VCNVE   GD G  ARASG  A +++H  D +   VKLPSG  K +   CRA IG VAGGGRT+KP +KAGN +HK + +   WP VRGVAMN V+H
Sbjct:    1 MGRRIQGQRRGRGTSTFRAPSHRYKADLEHRKVEDGD---VIAGTVVDIEHDPARSAPVAAVEFEDGDR-----RLILAPEGVGVGDELQVGVSAEIAPGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTH--DRNVAVVKLPSGEMKRLDPQCRATIGVVAGGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDH 200          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_METKA (50S ribosomal protein L2P OS=Methanopyrus kandleri GN=rpl2p PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.229e-41
Identity = 92/210 (43.81%), Postives = 121/210 (57.62%), Query Frame = 2
Query:   80 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            MG+ IR QR G G   +++ +H  +G  + R  D  E+ G + G V E++HDP R AP+ARV F        ++ L +  EG   G  + CG  A +  GN LP+  IPEG  + N+E   GD G  ARA G YA II+H  D   T V+LPSG  +     CRA IG ++GGG+ EKP +KAG  Y+  R K   WPKVRGVAMN V+H
Sbjct:    1 MGKRIRPQRLGRGGPTYRAPSHRYRGRIEHRPYDEQEKKGKVVGKVVELLHDPARNAPVARVRFEDG-----EERLILVPEGTKVGDIIECGVSAEIKPGNTLPLAEIPEGVPIFNIEGQPGDGGKFARAPGCYATIIAH--DVGRTYVQLPSGKVRTFDPRCRATIGVMSGGGKREKPFVKAGKKYYHMRSKGGKWPKVRGVAMNAVDH 203          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_THEGJ (50S ribosomal protein L2P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.605e-41
Identity = 93/210 (44.29%), Postives = 127/210 (60.48%), Query Frame = 2
Query:   80 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            MG+ +  QR+G G+  F++ +H  +G  ++  L+  +    L+GVV EI+HDPGR AP+ARV F         K+L +A EG+  GQ +Y G +A + +GN LP+  IPEG  V N+E   GD G   RA G YA+++S   + D   V+LPSG  K     CRA IG VAGGGR EKP++KAG AY+  + +   WPK RGV MN V H
Sbjct:    1 MGKSLIQQRRGKGTTTFRAPSHRYRGAVKYVPLNIVKEKT-LRGVVEEILHDPGRTAPVARVKFEDG-----TKKLILAPEGVLVGQEIYIGPEAPIAIGNTLPLAKIPEGTYVYNIEGVPGDGGKYVRAGGTYALVVSR--ERDKVIVQLPSGELKQFKPECRATIGVVAGGGRLEKPIVKAGKAYYIAKARNRFWPKPRGVKMNAVNH 202          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_KORCO (50S ribosomal protein L2P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.605e-41
Identity = 91/210 (43.33%), Postives = 128/210 (60.95%), Query Frame = 2
Query:   80 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            MG+ I  QR+G G + F+S  H +  PA++        +  ++GV+ EI+H+PGR  P++ V   +      Q+  +I  EG+Y GQ +  GK A +  GNVLP+  IP+G++VCNVE   GD G +AR SG YA++ SH  + D   ++LPS  +K++ + CRA IG VAG GR EKP +KAG  Y+  R     WP VRGVAMNPV H
Sbjct:    1 MGKRILVQRRGRGGIQFRSKDHLKIAPARYPQ---DGMDNLMRGVIKEILHEPGRHTPISLVELENG-----QEFYYIPPEGVYEGQEIQIGKGAEVKTGNVLPLSEIPDGSLVCNVEIRPGDGGKIARRSGTYAIVFSH--EGDKVILRLPSRKEKLVDARCRATIGVVAGSGRIEKPFMKAGIKYYHERTHPKRWPVVRGVAMNPVSH 200          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_HALWD (50S ribosomal protein L2P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.605e-41
Identity = 94/210 (44.76%), Postives = 124/210 (59.05%), Query Frame = 2
Query:   80 MGRVIRAQRKGAG-SVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            MGR I+ QR+G G S F++ +H  K     +     E +  + G + +I HDP R AP+A V F    R      L +A EG+  G+ +  G  A +  GN LP+R IPEG  VCNVE  VGD G  ARASG  A +++H  D D   ++LPSG  K +   C+A IG VAGGGRTEKP +KAG  +HK + +   WP+VRGVAMN V+H
Sbjct:    1 MGRRIQGQRRGRGTSTFRAPSHRYKAELSHKQ---SESDDTITGTIVDIEHDPARSAPVAAVEFDDGDR-----RLVLAPEGIRVGETMQIGVSAEIKPGNTLPLREIPEGVPVCNVESQVGDGGKFARASGTSAQLMTH--DRDVVVIELPSGETKRLSPACQATIGVVAGGGRTEKPFVKAGKKHHKMKARGIKWPRVRGVAMNAVDH 200          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_PYRKO (50S ribosomal protein L2P OS=Pyrococcus kodakaraensis GN=rpl2p PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.737e-41
Identity = 93/210 (44.29%), Postives = 127/210 (60.48%), Query Frame = 2
Query:   80 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            MG+ +  QR+G G+  F++ +H  +G  ++  L+  +    L+GVV EI+HDPGR AP+ARV F         K+L IA EG+  GQ +Y G +A + +GN LP+  IPEG  V ++E   GD G   RA G YA+++S   + D   V+LPSG  K     CRA IG VAGGGR EKP++KAG AY+  + +   WPK RGV MN V H
Sbjct:    1 MGKSLIQQRRGKGTTTFRAPSHRYRGAVRYVPLNLVQERT-LRGVVEEILHDPGRTAPVARVKFEDG-----TKKLIIAPEGVLVGQEIYIGPEAPIAIGNTLPLAKIPEGTYVYDIEGVPGDGGKYVRAGGTYALVVSR--EKDKVIVQLPSGELKAFNPMCRATIGVVAGGGRLEKPIVKAGKAYYIAKARNRFWPKPRGVKMNAVNH 202          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_METST (50S ribosomal protein L2P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.737e-41
Identity = 93/210 (44.29%), Postives = 127/210 (60.48%), Query Frame = 2
Query:   80 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            MG+ +  QR+G G+  ++S +H  +G   +RS D  ER G L G+V +IIHDPGR AP+A V F +      +++L +A E +     + CG  A++  GN LP+  IPEG  V N+E++ GD G   R+SG YA +I+H  D D T +++PSG  K      RA +G VAGGGR EKP LKAGN YH  + K      VRGVAMN V+H
Sbjct:    1 MGKRLIIQRRGRGTPTYRSSSHRFRGKVAYRSYDKLEREGSLTGIVIDIIHDPGRSAPVAVVKFDNG-----EEKLVLAPESIAIDDEIECGVSASIEPGNTLPLSEIPEGTPVFNIENNPGDGGKFVRSSGTYASLITH--DVDKTMIEMPSGELKAFNPRSRATVGVVAGGGRKEKPFLKAGNRYHALKAKGKKMMTVRGVAMNAVDH 203          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL8_ENTHI (60S ribosomal protein L8 (Fragment) OS=Entamoeba histolytica GN=RPL8 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.574e-41
Identity = 76/114 (66.67%), Postives = 94/114 (82.46%), Query Frame = 2
Query:  203 KGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAK 544
            +G+V  I HDPGRGAPLARV FR+P +Y   KELFI AEG+Y+GQ++YCG KA+L +GNVLP+   PEG VVCNVE   GDRG++ARASG+YA +ISHN DN+TTR++LPSGAK
Sbjct:   33 RGLVKSIEHDPGRGAPLARVVFRNPRQYGLDKELFICAEGLYSGQYIYCGSKASLHIGNVLPIGQCPEGTVVCNVESKPGDRGIIARASGNYATVISHNADNETTRIRLPSGAK 146          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_METTP (50S ribosomal protein L2P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.668e-41
Identity = 91/210 (43.33%), Postives = 130/210 (61.90%), Query Frame = 2
Query:   80 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            MG+ I +Q +G G+  +++ +H  +  A  + + F      ++G+V +I+HDP R AP+A V   +      +K+  +A EG Y GQ + CG  A +  GN LP+ SIPEG  +CN+E   G  G  ARASG Y ++++H  D   T V+LPSG  K +   C A IG VAGGGRTEKPL+KAG +++K+R K   WP+VRGVAMN V+H
Sbjct:    1 MGKRIISQNRGKGTPTYRAPSHRYR--ADIKHIKFS--GDLVRGIVEDIMHDPARTAPVALVRLENG-----EKQYVLATEGTYIGQEIACGPAAEIQPGNTLPLASIPEGMPICNIESKPGHGGQFARASGVYGILVAH--DVGATVVQLPSGEMKWLNPNCLATIGVVAGGGRTEKPLVKAGKSFYKYRSKAVKWPRVRGVAMNAVDH 199          
The following BLAST results are available for this feature:
BLAST of FC930788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_AERPE2.475e-4246.6750S ribosomal protein L2P OS=Aeropyrum pernix GN=r... [more]
RL2_HALMA9.407e-4245.7150S ribosomal protein L2P OS=Haloarcula marismortu... [more]
RL2_METKA1.229e-4143.8150S ribosomal protein L2P OS=Methanopyrus kandleri... [more]
RL2_THEGJ1.605e-4144.2950S ribosomal protein L2P OS=Thermococcus gammatol... [more]
RL2_KORCO1.605e-4143.3350S ribosomal protein L2P OS=Korarchaeum cryptofil... [more]
RL2_HALWD1.605e-4144.7650S ribosomal protein L2P OS=Haloquadratum walsbyi... [more]
RL2_PYRKO2.737e-4144.2950S ribosomal protein L2P OS=Pyrococcus kodakaraen... [more]
RL2_METST2.737e-4144.2950S ribosomal protein L2P OS=Methanosphaera stadtm... [more]
RL8_ENTHI3.574e-4166.6760S ribosomal protein L8 (Fragment) OS=Entamoeba h... [more]
RL2_METTP4.668e-4143.3350S ribosomal protein L2P OS=Methanosaeta thermoph... [more]

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Properties
Property NameValue
Genbank descriptionC34109A09EF PostHarvP1 Citrus clementina cDNA clone C34109A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930788 ID=FC930788; Name=FC930788; organism=Citrus clementina; type=EST; length=708bp
GCATCTTCCCAATCCACACATATATATATATATTCATCAGCCTGCCGCAC
AAGCTCAGTCTCTTTCGCCCTCTAAAGAAATGGGTCGTGTGATTCGCGCA
CAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGTAA
GGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTACC
TCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCCCG
CTGGCCCGAGTCACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAGGA
GCTTTTCATTGCCGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTGCG
GCAAGAAAGCCACTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTATC
CCTGAAGGAGCTGTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGCGG
TGTTTTGGCTAGAGCTTCTGGTGATTATGCCGTTATCATCAGTCATAACC
CCGATAATGACACCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGATT
ATTCCAAGTGGCTGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGGAG
GACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGAG
TGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGTG
GAGCATCC
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